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StringBuffer --> StringBuilder
2015-03-23
gmungoc
StringBuffer --> StringBuilder
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2015-03-23
gmungoc
Merge branch 'features/sequenceFeatureRefactor' into...
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2015-03-19
gmungoc
JAL-845 fix bug in 3-to-1 scaling of protein from cDNA
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2015-03-18
gmungoc
JAL-1680 small tidy
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2015-03-18
gmungoc
JAL-845 adjust both sides of split frame when changing...
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2015-03-18
gmungoc
JAL-1675 Chimera highlight side-chain; timeout added...
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2015-03-18
gmungoc
Merge hack/JAL-1617 fake DBRef to develop
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2015-03-18
gmungoc
JAL-845 map 'STOP' codons correctly
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2015-03-17
gmungoc
JAL-1687 ignore case when determining if sequence matches...
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2015-03-17
gmungoc
JAL-845 ensure cDNA consensus scales with font size
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2015-03-17
gmungoc
JAL-845 provide a moveable divider for SplitFrame ...
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2015-03-16
gmungoc
JAL-845 tweaks and bug fixes for split frame view
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2015-03-13
gmungoc
JAL-845 refinements + tests for making mappings between...
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2015-03-13
gmungoc
JAL-1686 @Override and/or TODO added to equals(Object...
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2015-03-13
gmungoc
JAL-1684 allow X in protein to map to untranslatable...
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2015-03-13
gmungoc
JAL-1685 fixed
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2015-03-12
gmungoc
JAL-1544 sequece now sequence
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2015-03-11
gmungoc
JAL-1684 better window size parameters; match up sequence...
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2015-03-11
gmungoc
JAL-1684 fix bug in AlignmentView constructor
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2015-03-11
gmungoc
JAL-1684 include JMOL jar for applet
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2015-03-11
gmungoc
JAL-1684 fix jars list, parameters for new example
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2015-03-11
gmungoc
JAL-845 start cDNA consensus on 'add alignment' (as...
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2015-03-11
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-03-11
gmungoc
JAL-1685 further tests
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2015-03-11
gmungoc
JAL-845 smarter test for 'mappability' when adding...
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2015-03-11
gmungoc
JAL-1421 changed Vector to List<String> for protein...
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2015-03-11
gmungoc
JAL-1685 tests added for ambiguity codes (including...
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2015-03-11
gmungoc
JAL-845 cDNA mapping: select on sequence translation...
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2015-03-11
gmungoc
JAL-845 handle no profile without NPE!
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2015-03-11
gmungoc
JAL-1684 applet example for SplitFrame view of cDNA...
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2015-03-10
gmungoc
JAL-1680 group consensus speeded up with a different...
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2015-03-10
gmungoc
JAL-1681 show cDNA consensus on protein alignment ...
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2015-03-05
gmungoc
Merge branch 'develop' into features/JAL-845splitPaneMergeDe...
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2015-03-05
gmungoc
JAL-845 minor tidy / tests / javadoc tweaks
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2015-03-05
gmungoc
JAL-1270 tests added
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2015-03-04
gmungoc
JAL-845 bug fixes correcting linked editing
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2015-03-03
gmungoc
JAL-845 refactor / typo fix
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2015-03-03
gmungoc
JAL-845 implement alignment of protein to match cDNA...
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2015-03-03
gmungoc
JAL-1452 nucleotide/protein default colour; JAL-845...
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2015-02-27
gmungoc
JAL-1452 distinct colour preferences for nucleotide...
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2015-02-27
gmungoc
JAL-845 SplitFrame for "show product" and after aligning...
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2015-02-25
gmungoc
JAL-1677 commenting use of AlignViewport.gatherViewsHere
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2015-02-24
gmungoc
JAL-1677 Castor source changes
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2015-02-24
gmungoc
JAL-845 set top and bottom seq id widths the same
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2015-02-24
gmungoc
JAL-1677 save/restore SplitFrame to Jalview project
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2015-02-23
gmungoc
JAL-845 repaint of complementary selection (applet)
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2015-02-23
gmungoc
JAL-1619 split frame now offered in applet 'input from...
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2015-02-20
gmungoc
JAL-1673 additional test (and trim of PDB resnum value)
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2015-02-20
gmungoc
JAL-1675 correct highlighting in Chimera for mouseover...
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2015-02-20
gmungoc
JAL-1665 create dataset sequences in applet
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2015-02-20
gmungoc
JAL-1674 update both status bars when mousing over...
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2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
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2015-02-19
gmungoc
JAL-845 applet colour by tree; translate as cDNA; pull...
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2015-02-13
gmungoc
JAL-845 first rough applet SplitFrame (add parameter...
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2015-02-12
gmungoc
JAL-1633 set file format on 'translate cDNA'
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2015-02-12
gmungoc
Merge remote-tracking branch 'origin/merge/JAL-845_JAL...
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2015-02-11
gmungoc
JAL-845 handling eXpand/Gather split frame views
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2015-02-11
gmungoc
JAL-1264 button labels (for panel currently not linked...
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2015-02-10
gmungoc
JAL-1264 unit tests fixed (have to explicit set annotation...
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2015-02-09
gmungoc
Merge remote-tracking branch 'origin/develop' into
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2015-02-06
gmungoc
JAL-845 further code/tests/refactoring
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2015-02-03
gmungoc
comment only
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2015-02-03
gmungoc
JAL-845 column mapping speed-up
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2015-02-03
gmungoc
JAL-845 SplitFrame key bindings delegation to AlignFrame...
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2015-02-03
gmungoc
JAL-845 preparation for awareness of AlignFrame in...
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2015-02-03
gmungoc
JAL-845 redundant 'map to self' removed from buildSearchResults
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2015-02-03
gmungoc
Comments added
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2015-02-03
gmungoc
JAL-845 code/refactoring/tests related to linking DNA...
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2015-01-30
gmungoc
JAL-845 linked protein/dna 'slave' further PoC functionality
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2015-01-27
gmungoc
JAL-1588 new class renamed
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2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
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2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
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2015-01-23
gmungoc
JAL-1588 first working (?) restore of Chimera session...
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2015-01-23
gmungoc
JAL-1619 javadoc/tidy
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2015-01-23
gmungoc
JAL-1635 show warning if less than 3 columns selected...
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2015-01-23
gmungoc
Random DNA generator tarted up
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2015-01-22
gmungoc
JAL-1619 refactoring / tests to support 'align linked...
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2015-01-20
gmungoc
JAL-1619 test that reordering cDNA does not change...
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2015-01-20
gmungoc
JAL-1619 tweaked for better reusability
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2015-01-19
gmungoc
JAL-1619 refactored cDNA translation; modified codon...
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2015-01-19
gmungoc
JAL-1636 typed collections now in ResidueProperties
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2015-01-19
gmungoc
JAL-1636 fix for mouseover of 'X' in translated protein
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2015-01-18
gmungoc
JAL-1619 refactoring wip
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2015-01-17
gmungoc
JAL-1619 further refactoring
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2015-01-16
gmungoc
JAL-1619 refactoring in progress for Dna translation
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2015-01-14
gmungoc
JAL-1619 AlignedCodonFrame in new alignment should...
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2015-01-14
gmungoc
JAL-1619 modified repaint after 'Align As' action
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2015-01-14
gmungoc
JAL-1619 Javadoc
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2015-01-14
gmungoc
JAL-1629 .jar option removed from Alignment File Save...
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2015-01-12
gmungoc
JAL-1619 load/align cDNA for protein (wip)
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2015-01-09
gmungoc
JAL-1588 check Chimera session file still exists
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2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
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2015-01-07
gmungoc
JAL-845 TODO comment added
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2015-01-07
gmungoc
JAL-1551 formatting applied
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2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
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2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
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2015-01-04
gmungoc
JAL-1619 first draft of 'linked protein and cDNA'
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2014-12-28
gmungoc
Merge branch 'features/JAL-1596ChimeraREST' into develop
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2014-12-28
gmungoc
JAL-845 first working linked edit protein -> cDNA
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2014-12-16
gmungoc
JAL-1328 System.exit() removed as it aborts an entire...
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