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always use interface rather than field access
2015-01-18 Jim Procteralways use interface rather than field access
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2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
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2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
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2015-01-09 Jim ProcterMerge branch 'JAL-1483_29dev' into develop
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2015-01-09 Jim ProcterJAL-1483 formatting
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2015-01-09 Jim ProcterJAL-1483 remember to look at base dataset sequence...
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2015-01-08 Jim ProcterMerge branch 'JAL-1483_29dev' into develop
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2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev
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2015-01-07 Jim ProcterJAL-1483 patches to make test case pass: hamming distance...
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2015-01-07 Jim ProcterJAL-1483 basic test of sequence similarity score model...
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2015-01-07 Jim ProcterJAL-1483 source formatting
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2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfigured...
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2015-01-07 Jim ProcterJAL-1483 register feature similarity model
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2015-01-07 Jim ProcterJAL-1483 null features not displayed
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2015-01-07 Jim ProcterJAL-1483 check dataset for features if none found on...
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2015-01-07 Jim ProcterJAL-1483 organise imports
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2015-01-07 Jim ProcterJAL-1483 making type visible also adds it to registry
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2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 update applet authors list
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 disable desktop 'take snapshot' menu item...
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 dropped jnlp file in help documentation in...
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2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-03 Jim ProcterJAL-1517 updated library licensing info
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2014-12-03 Jim ProcterJAL-1517 release notes
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2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1517 typo
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2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1517 TOC items must be on one line for help2Website
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2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1602 tweak VM inclusion options
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2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1517 documentation for 2.8.2 release
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2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1602 typo in jsonsimple jar
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2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-02 Jim ProcterJAL-1602 add missing jars to install
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2014-12-01 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_Branch
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2014-12-01 Jim ProcterJAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes
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2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard...
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2014-12-01 Jim ProcterJAL-1517 updating author list
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2014-12-01 Jim ProcterJAL-1517 updating authors list
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2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element.
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2014-12-01 Jim ProcterJAL-1601 ignore the JABA Jpred client in Jalview 2...
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2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into...
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2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into...
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2014-12-01 Jim Procterfile for JAL-1268 jalview.io.Jalview2xmlTests.testTCoffeeScores
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2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into develop
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2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_Branch
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2014-11-28 Jim ProcterJAL-1517 first stab at release notes... lots of documentatio...
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2014-11-28 Jim ProcterJAL-1522 output installation type to stdout
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2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from...
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2014-11-28 Jim ProcterJAL-1517 formatting
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2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity
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2014-11-28 Jim ProcterJAL-1583 javadoc and fix constructor signature
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2014-11-28 Jim ProcterJAL-1342 document argument to specify preferred JABA...
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2014-11-28 Jim ProcterJAL-1604 formatting
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2014-11-28 Jim ProcterJAL-1604 revised wording and internationalised dialog
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2014-11-28 Jim ProcterJAL-1583 back out original fix and simply check MSAWSThread...
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2014-11-28 Jim ProcterJAL-1583 formatting
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2014-11-28 Jim ProcterJAL-1583 new validInput flag set according to validity...
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2014-11-28 Jim ProcterJAL-1583 refactored addInternalFrame to allow webservice...
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2014-11-28 Jim ProcterJAL-1517 formatting/tidy
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2014-11-27 Jim ProcterJAL-1517 svg==scalable :)
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2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_Branch
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2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into develop
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2014-11-27 Jim ProcterJAL-674 add sequence associated annotation rows to...
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2014-11-27 Jim ProcterJAL-1177 JAL-905 cannot recover sequences from dataset...
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2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code
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2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into develop
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2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_Branch
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2014-11-27 Jim ProcterJAL-674 patch to fix bug with showing reference annotation...
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2014-11-27 Jim ProcterJAL-674 formatting
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2014-11-27 Jim ProcterJAL-674 unused variable
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2014-11-27 Jim ProcterJAL-674 bug in test
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2014-11-27 Jim ProcterJAL-674 test that PDB annotation created when importing...
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2014-11-27 Jim ProcterJAL-674 patch NPE bug when test run in isolation
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2014-11-27 Jim ProcterJAL-674 fix test properties path and add properties...
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2014-11-27 Jim ProcterJAL-674 JAL-966 new method to retrieve all views
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2014-11-27 Jim Procterorganise imports
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2014-11-27 Jim ProcterJAL-966 promote getName to an api method
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2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into develop
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2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into Release_2_8_2_Branch
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2014-11-26 Jim ProcterJAL-674 make RNAML-extracted secondary structure lines...
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2014-11-26 Jim ProcterJAL-1578 fix logic for showing score when no description...
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2014-11-26 Jim ProcterJAL-674 JAL-1578 commented code for displaying annotation...
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2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondary...
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2014-11-26 Jim ProcterJAL-674 employ the provided DNA/Protein matrix string...
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2014-11-26 Jim ProcterJAL-674 disable addition of PDBRESNUM annotation line
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2014-11-26 Jim ProcterJAL-674 nicer temperature factor labelling and include...
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2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into develop
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2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into Release_2_8_2_Branch
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2014-11-25 Jim Procterfix for JAL-689 ensure fastpainting flag set only when...
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2014-11-25 Jim Procterformatting
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2014-11-25 Jim Procterpatch for JAL-1599 - annotation row constructed by...
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2014-11-25 Jim ProcterMerge branch 'patch_JAL-689' into Release_2_8_2_Branch
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2014-11-25 Jim Procterback out duplicate jfree classpath entry
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2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop
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