jalview.git
2015-01-19 gmungocJAL-1619 refactored cDNA translation; modified codon...
2015-01-19 gmungocJAL-1636 typed collections now in ResidueProperties
2015-01-19 gmungocJAL-1636 fix for mouseover of 'X' in translated protein
2015-01-18 gmungocJAL-1619 refactoring wip
2015-01-17 gmungocJAL-1619 further refactoring
2015-01-16 gmungocJAL-1619 refactoring in progress for Dna translation
2015-01-14 gmungocJAL-1619 AlignedCodonFrame in new alignment should...
2015-01-14 gmungocJAL-1619 modified repaint after 'Align As' action
2015-01-14 gmungocJAL-1619 Javadoc
2015-01-12 gmungocJAL-1619 load/align cDNA for protein (wip)
2015-01-07 gmungocJAL-845 TODO comment added
2015-01-04 gmungocJAL-1619 first draft of 'linked protein and cDNA'
2014-12-28 gmungocJAL-845 first working linked edit protein -> cDNA
2014-12-16 gmungocJAL-1328 System.exit() removed as it aborts an entire...
2014-12-16 gmungocJAL-845 first simple unit tests added
2014-12-16 gmungocJAL-845 move main method to 'test' class (needs further...
2014-12-16 gmungocJAL-1618 feature parsing bug (and formatting)
2014-12-16 gmungocJAL-1619 refactorings: Map, StringBuilder, Override
2014-12-16 gmungocJAL-845 formatting only (block parentheses)
2014-12-16 gmungocJAL-1619 don't copy hidden or RNA SS annotations to...
2014-12-12 gmungocJAL-845 don't translate hidden annotation (plus formatting)
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched Release_2_8_2_Branch
2014-12-08 Charles OfoegbuJAL-1613 hotfix for duplicated sequence after pairwise...
2014-12-05 gmungocJAL-1614 flag 'protein' removed
2014-12-03 gmungocMerge branch 'Release_2_8_2_Branch' of https://source...
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-03 Jim ProcterJAL-1517 update applet authors list
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-03 Jim ProcterJAL-1517 disable desktop 'take snapshot' menu item...
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-03 Jim ProcterJAL-1517 dropped jnlp file in help documentation in...
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-03 Jim ProcterJAL-1517 updated library licensing info
2014-12-03 Jim ProcterJAL-1517 release notes
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-02 Jim ProcterJAL-1517 typo
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-02 Jim ProcterJAL-1517 TOC items must be on one line for help2Website
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_...
2014-12-02 Jim ProcterJAL-1602 tweak VM inclusion options
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-02 Jim ProcterJAL-1517 documentation for 2.8.2 release
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_...
2014-12-02 Jim ProcterJAL-1602 typo in jsonsimple jar
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_...
2014-12-02 Jim ProcterJAL-1602 add missing jars to install
2014-12-01 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_...
2014-12-01 Jim ProcterJAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard...
2014-12-01 Jim ProcterJAL-1517 updating author list
2014-12-01 Jim ProcterJAL-1517 updating authors list
2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element.
2014-12-01 Jim ProcterJAL-1601 ignore the JABA Jpred client in Jalview 2...
2014-12-01 gmungocJAL-429 Phylip added to help page
2014-12-01 gmungocJAL-1544 typos/formatting in help (and Phylip added)
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into...
2014-12-01 Jim Procterfile for JAL-1268 jalview.io.Jalview2xmlTests.testTCoff...
2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-11-28 Jim ProcterJAL-1517 first stab at release notes... lots of documen...
2014-11-28 gmungocJAL-1610 check reference annotations against alignment...
2014-11-28 Jim ProcterJAL-1522 output installation type to stdout
2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from...
2014-11-28 Jim ProcterJAL-1517 formatting
2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity
2014-11-28 Jim ProcterJAL-1583 javadoc and fix constructor signature
2014-11-28 Jim ProcterJAL-1342 document argument to specify preferred JABA...
2014-11-28 Jim ProcterJAL-1604 formatting
2014-11-28 Jim ProcterJAL-1604 revised wording and internationalised dialog
2014-11-28 Jim ProcterJAL-1583 back out original fix and simply check MSAWSTh...
2014-11-28 Jim ProcterJAL-1583 formatting
2014-11-28 Jim ProcterJAL-1583 new validInput flag set according to validity...
2014-11-28 Jim ProcterJAL-1583 refactored addInternalFrame to allow webservic...
2014-11-28 Jim ProcterJAL-1517 formatting/tidy
2014-11-27 Jim ProcterJAL-1517 svg==scalable :)
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B...
2014-11-27 Jim ProcterJAL-674 add sequence associated annotation rows to...
2014-11-27 Jim ProcterJAL-1177 JAL-905 cannot recover sequences from dataset...
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B...
2014-11-27 Jim ProcterJAL-674 patch to fix bug with showing reference annotat...
2014-11-27 Jim ProcterJAL-674 formatting
2014-11-27 Jim ProcterJAL-674 unused variable
2014-11-27 Jim ProcterJAL-674 bug in test
2014-11-27 gmungocJAL-1603 if Chimera selected in Preferences, warn if...
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source...
2014-11-27 Jim ProcterJAL-674 test that PDB annotation created when importing...
2014-11-27 Jim ProcterJAL-674 patch NPE bug when test run in isolation
2014-11-27 Jim ProcterJAL-674 fix test properties path and add properties...
2014-11-27 Jim ProcterJAL-674 JAL-966 new method to retrieve all views
2014-11-27 Jim Procterorganise imports
2014-11-27 Jim ProcterJAL-966 promote getName to an api method
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1604_Entire-alignment-submission...
2014-11-27 Charles OfoegbuJAL-1604 Entire sequence submision for MSA job bugfix
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1583_MSA_webservice_validation...
2014-11-27 Charles Ofoegbumodified regex for sequence validation
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source...
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-207_pairwise-alignment-context...
2014-11-26 Charles OfoegbuJAL-207 pairwise alignment sequence contexts propergati...
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into...
2014-11-26 Charles OfoegbuJAL-998 fixed empty tooltip bug when only one sequence...
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