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2014-12-03 Jim ProcterJAL-1517 dropped jnlp file in help documentation in... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 updated library licensing info commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 release notes commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1517 typo commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1517 TOC items must be on one line for help2Website commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1517 documentation for 2.8.2 release commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard... commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1517 updating author list commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1517 updating authors list commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element. commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1601 ignore the JABA Jpred client in Jalview 2... commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into... commit | commitdiff | tree | snapshot
2014-12-01 Jim Procterfile for JAL-1268 jalview.io.Jalview2xmlTests.testTCoff... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1517 first stab at release notes... lots of documen... commit | commitdiff | tree | snapshot
2014-11-28 gmungocJAL-1610 check reference annotations against alignment... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1522 output installation type to stdout commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1517 formatting commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 javadoc and fix constructor signature commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1342 document argument to specify preferred JABA... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1604 formatting commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1604 revised wording and internationalised dialog commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 back out original fix and simply check MSAWSTh... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 formatting commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 new validInput flag set according to validity... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 refactored addInternalFrame to allow webservic... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1517 formatting/tidy commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-1517 svg==scalable :) commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 add sequence associated annotation rows to... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-1177 JAL-905 cannot recover sequences from dataset... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 patch to fix bug with showing reference annotat... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 formatting commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 unused variable commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 bug in test commit | commitdiff | tree | snapshot
2014-11-27 gmungocJAL-1603 if Chimera selected in Preferences, warn if... commit | commitdiff | tree | snapshot
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 test that PDB annotation created when importing... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 patch NPE bug when test run in isolation commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 fix test properties path and add properties... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 JAL-966 new method to retrieve all views commit | commitdiff | tree | snapshot
2014-11-27 Jim Procterorganise imports commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-966 promote getName to an api method commit | commitdiff | tree | snapshot
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1604_Entire-alignment-submission... commit | commitdiff | tree | snapshot
2014-11-27 Charles OfoegbuJAL-1604 Entire sequence submision for MSA job bugfix commit | commitdiff | tree | snapshot
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1583_MSA_webservice_validation... commit | commitdiff | tree | snapshot
2014-11-27 Charles Ofoegbumodified regex for sequence validation commit | commitdiff | tree | snapshot
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-207_pairwise-alignment-context... commit | commitdiff | tree | snapshot
2014-11-26 Charles OfoegbuJAL-207 pairwise alignment sequence contexts propergati... commit | commitdiff | tree | snapshot
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into... commit | commitdiff | tree | snapshot
2014-11-26 Charles OfoegbuJAL-998 fixed empty tooltip bug when only one sequence... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into Release_2_8_... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterJAL-674 make RNAML-extracted secondary structure lines... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterJAL-1578 fix logic for showing score when no descriptio... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterJAL-674 JAL-1578 commented code for displaying annotati... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondar... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterJAL-674 employ the provided DNA/Protein matrix string... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterJAL-674 disable addition of PDBRESNUM annotation line commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterJAL-674 nicer temperature factor labelling and include... commit | commitdiff | tree | snapshot
2014-11-26 gmungocJAL-1528 NullPointer check / more informative PDB fetch... commit | commitdiff | tree | snapshot
2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-25 Jim Procterfix for JAL-689 ensure fastpainting flag set only when... commit | commitdiff | tree | snapshot
2014-11-25 Jim Procterformatting commit | commitdiff | tree | snapshot
2014-11-25 Jim Procterpatch for JAL-1599 - annotation row constructed by... commit | commitdiff | tree | snapshot
2014-11-25 Jim ProcterMerge branch 'patch_JAL-689' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-25 Jim Procterback out duplicate jfree classpath entry commit | commitdiff | tree | snapshot
2014-11-25 Charles OfoegbuMerge branch 'features/JAL-1469_svg-output-for-figure... commit | commitdiff | tree | snapshot
2014-11-25 Charles Ofoegbumerge commit features/JAL-1469_svg-output-for-figure-export commit | commitdiff | tree | snapshot
2014-11-25 Charles OfoegbuJAL-1469 Added SVGOptions.java for lineart/text renderi... commit | commitdiff | tree | snapshot
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic... commit | commitdiff | tree | snapshot
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... commit | commitdiff | tree | snapshot
2014-11-24 Jim ProcterJAL-1593 refactor rna helix colours to static singleton... commit | commitdiff | tree | snapshot
2014-11-24 Jim ProcterJAL-1264 update annotation panel dimensions before... commit | commitdiff | tree | snapshot
2014-11-24 Jim ProcterJAL-1595 update annotation sort on opening of the ... commit | commitdiff | tree | snapshot
2014-11-24 Jim ProcterJAL-1595 annotation score is total number of rna helices commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 interactive editing of secondary structure... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... commit | commitdiff | tree | snapshot
2014-11-23 Jim Procteremploy test and secondary structure character for deter... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (store... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 refactoring of stockholm test commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 revise tests to count number and type of annot... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 remove stdout on parsing RNA commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1152 avoid NPE on null alignment annotation vector commit | commitdiff | tree | snapshot
2014-11-21 gmungocJAL-1528 found and readded Colour by Chain ('rainbow... commit | commitdiff | tree | snapshot
2014-11-21 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to align... commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1140 sensible name for seuqences in RNAML files... commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna... commit | commitdiff | tree | snapshot
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