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jalview.git
2015-01-17 gmungocJAL-1619 further refactoring commit | commitdiff | tree | snapshot
2015-01-16 gmungocJAL-1619 refactoring in progress for Dna translation commit | commitdiff | tree | snapshot
2015-01-14 gmungocJAL-1619 AlignedCodonFrame in new alignment should... commit | commitdiff | tree | snapshot
2015-01-14 gmungocJAL-1619 modified repaint after 'Align As' action commit | commitdiff | tree | snapshot
2015-01-14 gmungocJAL-1619 Javadoc commit | commitdiff | tree | snapshot
2015-01-12 gmungocJAL-1619 load/align cDNA for protein (wip) commit | commitdiff | tree | snapshot
2015-01-07 gmungocJAL-845 TODO comment added commit | commitdiff | tree | snapshot
2015-01-04 gmungocJAL-1619 first draft of 'linked protein and cDNA' commit | commitdiff | tree | snapshot
2014-12-28 gmungocJAL-845 first working linked edit protein -> cDNA commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-1328 System.exit() removed as it aborts an entire... commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-845 first simple unit tests added commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-845 move main method to 'test' class (needs further... commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-1618 feature parsing bug (and formatting) commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-1619 refactorings: Map, StringBuilder, Override commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-845 formatting only (block parentheses) commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-1619 don't copy hidden or RNA SS annotations to... commit | commitdiff | tree | snapshot
2014-12-12 gmungocJAL-845 don't translate hidden annotation (plus formatting) commit | commitdiff | tree | snapshot
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-12-08 Charles OfoegbuJAL-1613 hotfix for duplicated sequence after pairwise... commit | commitdiff | tree | snapshot
2014-12-05 gmungocJAL-1614 flag 'protein' removed commit | commitdiff | tree | snapshot
2014-12-03 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 update applet authors list commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 disable desktop 'take snapshot' menu item... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 dropped jnlp file in help documentation in... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 updated library licensing info commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterJAL-1517 release notes commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1517 typo commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1517 TOC items must be on one line for help2Website commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1602 tweak VM inclusion options commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1517 documentation for 2.8.2 release commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1602 typo in jsonsimple jar commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-12-02 Jim ProcterJAL-1602 add missing jars to install commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard... commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1517 updating author list commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1517 updating authors list commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element. commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterJAL-1601 ignore the JABA Jpred client in Jalview 2... commit | commitdiff | tree | snapshot
2014-12-01 gmungocJAL-429 Phylip added to help page commit | commitdiff | tree | snapshot
2014-12-01 gmungocJAL-1544 typos/formatting in help (and Phylip added) commit | commitdiff | tree | snapshot
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into... commit | commitdiff | tree | snapshot
2014-12-01 Jim Procterfile for JAL-1268 jalview.io.Jalview2xmlTests.testTCoff... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1517 first stab at release notes... lots of documen... commit | commitdiff | tree | snapshot
2014-11-28 gmungocJAL-1610 check reference annotations against alignment... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1522 output installation type to stdout commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1517 formatting commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 javadoc and fix constructor signature commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1342 document argument to specify preferred JABA... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1604 formatting commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1604 revised wording and internationalised dialog commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 back out original fix and simply check MSAWSTh... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 formatting commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 new validInput flag set according to validity... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1583 refactored addInternalFrame to allow webservic... commit | commitdiff | tree | snapshot
2014-11-28 Jim ProcterJAL-1517 formatting/tidy commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-1517 svg==scalable :) commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 add sequence associated annotation rows to... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-1177 JAL-905 cannot recover sequences from dataset... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 patch to fix bug with showing reference annotat... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 formatting commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 unused variable commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 bug in test commit | commitdiff | tree | snapshot
2014-11-27 gmungocJAL-1603 if Chimera selected in Preferences, warn if... commit | commitdiff | tree | snapshot
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 test that PDB annotation created when importing... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 patch NPE bug when test run in isolation commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 fix test properties path and add properties... commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-674 JAL-966 new method to retrieve all views commit | commitdiff | tree | snapshot
2014-11-27 Jim Procterorganise imports commit | commitdiff | tree | snapshot
2014-11-27 Jim ProcterJAL-966 promote getName to an api method commit | commitdiff | tree | snapshot
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1604_Entire-alignment-submission... commit | commitdiff | tree | snapshot
2014-11-27 Charles OfoegbuJAL-1604 Entire sequence submision for MSA job bugfix commit | commitdiff | tree | snapshot
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1583_MSA_webservice_validation... commit | commitdiff | tree | snapshot
2014-11-27 Charles Ofoegbumodified regex for sequence validation commit | commitdiff | tree | snapshot
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-207_pairwise-alignment-context... commit | commitdiff | tree | snapshot
2014-11-26 Charles OfoegbuJAL-207 pairwise alignment sequence contexts propergati... commit | commitdiff | tree | snapshot
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into... commit | commitdiff | tree | snapshot
2014-11-26 Charles OfoegbuJAL-998 fixed empty tooltip bug when only one sequence... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into Release_2_8_... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterJAL-674 make RNAML-extracted secondary structure lines... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterJAL-1578 fix logic for showing score when no descriptio... commit | commitdiff | tree | snapshot
2014-11-26 Jim ProcterJAL-674 JAL-1578 commented code for displaying annotati... commit | commitdiff | tree | snapshot
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