jalview.git
2015-02-10 gmungocJAL-1264 unit tests fixed (have to explicit set annotat...
2015-02-09 gmungocMerge remote-tracking branch 'origin/develop' into
2015-02-06 gmungocJAL-845 further code/tests/refactoring
2015-02-03 gmungoccomment only
2015-02-03 gmungocJAL-845 column mapping speed-up
2015-02-03 gmungocJAL-845 SplitFrame key bindings delegation to AlignFram...
2015-02-03 gmungocJAL-845 preparation for awareness of AlignFrame in...
2015-02-03 gmungocJAL-845 redundant 'map to self' removed from buildSearc...
2015-02-03 gmungocComments added
2015-02-03 gmungocJAL-845 code/refactoring/tests related to linking DNA...
2015-01-30 gmungocJAL-845 linked protein/dna 'slave' further PoC function... features/JAL-845linkedProteinDnaEditing
2015-01-27 gmungocJAL-1588 new class renamed
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s)
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-23 gmungocJAL-1588 first working (?) restore of Chimera session...
2015-01-23 Charles OfoegbuJAL-1553 added help documentation and updated Annotatio... features/JAL-1553_improvement-select-column-by-annotation-row-query-interface
2015-01-23 Jim ProcterMerge branch 'feature_29/JAL-1372_referenceseq' into...
2015-01-23 Jim ProcterJAL-1541 changed assert to JUnit assert - test now...
2015-01-23 Jim ProcterJAL-1551 formatting
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream...
2015-01-23 Jim ProcterJAL-1551 crlf changes
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki...
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-23 gmungocJAL-1619 javadoc/tidy
2015-01-23 gmungocJAL-1635 show warning if less than 3 columns selected...
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer...
2015-01-23 Jim ProcterJAL-1551 formatting/imports
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-23 gmungocRandom DNA generator tarted up
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-23 Charles OfoegbuMerge branch 'develop' of https://source.jalview.org...
2015-01-23 Charles OfoegbuJAL-1553 fixed null pointer exception thrown in SeqCanv...
2015-01-23 Jim ProcterJAL-1551 source code formatting
2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-22 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column...
2015-01-22 Jim ProcterJAL-1372 JAL-1169 documentation for new commands HIDE_I...
2015-01-22 gmungocJAL-1619 refactoring / tests to support 'align linked...
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-21 Jim Proctertidy up class files that shouldn't be in repo
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles Ofoegbuclean up
2015-01-20 Charles Ofoegbuclean up
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles OfoegbuFurther abstractions and clean up
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles Ofoegbubasic house keeping
2015-01-20 Jim ProcterJAL-1304 revamped annotation file documentation structu...
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation...
2015-01-20 gmungocJAL-1619 test that reordering cDNA does not change...
2015-01-20 gmungocJAL-1619 tweaked for better reusability
2015-01-19 gmungocJAL-1619 refactored cDNA translation; modified codon...
2015-01-19 gmungocJAL-1636 typed collections now in ResidueProperties
2015-01-19 gmungocJAL-1636 fix for mouseover of 'X' in translated protein
2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative...
2015-01-18 Jim ProcterJAL-1628 formatting
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files...
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence...
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions...
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in...
2015-01-18 Jim Procteralways use interface rather than field access
2015-01-18 gmungocJAL-1619 refactoring wip
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
2015-01-17 gmungocJAL-1619 further refactoring
2015-01-16 gmungocJAL-1619 refactoring in progress for Dna translation
2015-01-14 gmungocJAL-1619 AlignedCodonFrame in new alignment should...
2015-01-14 gmungocJAL-1619 modified repaint after 'Align As' action
2015-01-14 gmungocJAL-1619 Javadoc
2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save...
2015-01-14 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot...
2015-01-14 Charles OfoegbuModified AnnotationColumnChooser to maintain state... features/JAL-1553_select-columns-by-annotation
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot...
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh...
2015-01-12 gmungocJAL-1619 load/align cDNA for protein (wip)
2015-01-10 Charles OfoegbuJAL-1553 merge commit
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati...
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
2015-01-09 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into...
2015-01-09 Jim ProcterMerge branch 'JAL-1483_29dev' into develop
2015-01-09 Jim ProcterJAL-1483 formatting
2015-01-09 Jim ProcterJAL-1483 remember to look at base dataset sequence...
2015-01-09 gmungocJAL-1588 check Chimera session file still exists
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
2015-01-08 Jim ProcterMerge branch 'JAL-1483_29dev' into develop
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev
2015-01-07 Jim ProcterJAL-1483 patches to make test case pass: hamming distan...
2015-01-07 Jim ProcterJAL-1483 basic test of sequence similarity score model...
2015-01-07 Jim ProcterJAL-1483 source formatting
2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfig...
2015-01-07 Jim ProcterJAL-1483 register feature similarity model
2015-01-07 Jim ProcterJAL-1483 null features not displayed
2015-01-07 Jim ProcterJAL-1483 check dataset for features if none found on...
2015-01-07 Jim ProcterJAL-1483 organise imports
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