jalview.git
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer...
2015-01-23 Jim ProcterJAL-1551 formatting/imports
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-23 Jim ProcterJAL-1551 source code formatting
2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-22 Jim ProcterJAL-1372 JAL-1169 documentation for new commands HIDE_I...
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-21 Jim Proctertidy up class files that shouldn't be in repo
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles Ofoegbuclean up
2015-01-20 Charles Ofoegbuclean up
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles OfoegbuFurther abstractions and clean up
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles Ofoegbubasic house keeping
2015-01-20 Jim ProcterJAL-1304 revamped annotation file documentation structu...
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation...
2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative...
2015-01-18 Jim ProcterJAL-1628 formatting
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files...
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence...
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions...
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in...
2015-01-18 Jim Procteralways use interface rather than field access
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save...
2015-01-14 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot...
2015-01-14 Charles OfoegbuModified AnnotationColumnChooser to maintain state... features/JAL-1553_select-columns-by-annotation
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot...
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh...
2015-01-10 Charles OfoegbuJAL-1553 merge commit
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati...
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
2015-01-09 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into...
2015-01-09 Jim ProcterMerge branch 'JAL-1483_29dev' into develop
2015-01-09 Jim ProcterJAL-1483 formatting
2015-01-09 Jim ProcterJAL-1483 remember to look at base dataset sequence...
2015-01-08 Jim ProcterMerge branch 'JAL-1483_29dev' into develop
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev
2015-01-07 Jim ProcterJAL-1483 patches to make test case pass: hamming distan...
2015-01-07 Jim ProcterJAL-1483 basic test of sequence similarity score model...
2015-01-07 Jim ProcterJAL-1483 source formatting
2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfig...
2015-01-07 Jim ProcterJAL-1483 register feature similarity model
2015-01-07 Jim ProcterJAL-1483 null features not displayed
2015-01-07 Jim ProcterJAL-1483 check dataset for features if none found on...
2015-01-07 Jim ProcterJAL-1483 organise imports
2015-01-07 Jim ProcterJAL-1483 making type visible also adds it to registry
2014-12-28 gmungocMerge branch 'features/JAL-1596ChimeraREST' into develop
2014-12-22 Charles OfoegbuPatch to synchronize title svg and allignment svg scrolling
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when...
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... features/JAL-1605_html-svg-export
2014-12-14 Mungo CarstairsJAL-1596 set HTTP 1.1 in HttpClient
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched
2014-12-08 Charles Ofoegbumerge commit
2014-12-08 Charles OfoegbuJAL-1613 hotfix for duplicated sequence after pairwise...
2014-12-08 Charles OfoegbuAdded annotation export configuration for Html export...
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into...
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export...
2014-12-05 Charles Ofoegbumodified html css
2014-12-05 Charles OfoegbuJAL-1605 merge commit
2014-12-05 Charles OfoegbuChange the Html export to utilize svg
2014-12-05 gmungocJAL-1614 flag 'protein' removed
2014-12-05 gmungocJAL-1614 flag 'protein' removed
2014-12-05 gmungocJAL-1609 refactored colour by sequence command, now...
2014-12-05 gmungocMerge branch 'Release_2_8_2_Branch' of local repository...
2014-12-03 gmungocMerge branch 'Release_2_8_2_Branch' of https://source...
2014-12-03 gmungocJAL-1609 wip on Chimera colour by sequence
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-03 Jim ProcterJAL-1517 update applet authors list
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-03 Jim ProcterJAL-1517 disable desktop 'take snapshot' menu item...
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-03 Jim ProcterJAL-1517 dropped jnlp file in help documentation in...
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-03 Jim ProcterJAL-1517 updated library licensing info
2014-12-03 Jim ProcterJAL-1517 release notes
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-02 Jim ProcterJAL-1517 typo
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-02 Jim ProcterJAL-1517 TOC items must be on one line for help2Website
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_...
2014-12-02 Jim ProcterJAL-1602 tweak VM inclusion options
2014-12-02 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B...
2014-12-02 Jim ProcterJAL-1517 documentation for 2.8.2 release
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_...
2014-12-02 Jim ProcterJAL-1602 typo in jsonsimple jar
2014-12-02 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_...
2014-12-02 Jim ProcterJAL-1602 add missing jars to install
2014-12-01 Jim ProcterMerge branch 'JAL-1602_282_release' into Release_2_8_2_...
2014-12-01 Jim ProcterJAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard...
2014-12-01 Jim ProcterJAL-1517 updating author list
2014-12-01 Jim ProcterJAL-1517 updating authors list
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