jalview.git
2006-07-28 amwaterhousegetIndex replaced with findSeq in seqPanel
2006-07-28 amwaterhouseRemove system.out
2006-07-28 amwaterhouseScrolling fixed and selection in wrapped mode updated
2006-07-28 amwaterhousegetIndex replaced by findSeq in Seqpanel
2006-07-28 amwaterhouseOut by one error on reveal columns
2006-07-28 amwaterhouseCheck height of featurePanel, not this for mousepresses
2006-07-28 amwaterhouse1.1 compatible
2006-07-28 amwaterhouseApplet doesnt have hidden columns
2006-07-28 amwaterhouseDont set all feature descriptions on status bar
2006-07-28 amwaterhouseDont draw all the panel if just a mouse movement
2006-07-28 amwaterhouseIf colour hasnt been created, make a new one
2006-07-28 amwaterhouseAdd transparency
2006-07-28 amwaterhouseoutput source in gff file
2006-07-27 amwaterhouseSend gapChar to print original Data
2006-07-27 amwaterhouseRemove immediate call to repaint when deleting
2006-07-27 amwaterhouseseq size cant be less than 2 for tree
2006-07-27 amwaterhouseSends gapChar to seqData
2006-07-27 amwaterhouseremove unnecessary constructor
2006-07-27 amwaterhouseRemove unnecessary imports
2006-07-27 amwaterhouseReset das_registry_url if null or empty
2006-07-27 amwaterhouseDont set pdb file if it doenst exist
2006-07-27 amwaterhouseNOR the <pre> tabs
2006-07-27 amwaterhouseUse DBRefSource.PDB
2006-07-27 amwaterhouseSave PDB file to disk
2006-07-27 amwaterhouseReadline instead of bit by bit
2006-07-27 amwaterhouseCant have col less than 0
2006-07-27 amwaterhouseSave ref to pdb file
2006-07-27 amwaterhouseReadded
2006-07-26 jprocteraccidental commit of a build
2006-07-26 amwaterhousePDB file MUST have an id
2006-07-26 amwaterhousenot used
2006-07-26 amwaterhouseLoad and save PDB files
2006-07-26 amwaterhouseAdd file ref for pdb files
2006-07-26 jprocterIgnore list created
2006-07-26 jprocterCigars for representing alignment view as used for...
2006-07-26 jprocterCigarBase class and derivatives.
2006-07-26 jprocterImplemented CIGAR representation of an Alignment view...
2006-07-26 jprocterCompact Idiosyncratic Gapped Alignment Representation...
2006-07-26 amwaterhouseSwitch to new srs url
2006-07-26 amwaterhouseseqs[j] replaces current
2006-07-26 amwaterhousemoved to org.biojava
2006-07-26 amwaterhouseback to org.biojava
2006-07-26 amwaterhouseBack to org.biojava
2006-07-26 amwaterhouseColumn hide/show updated
2006-07-26 amwaterhouseCalculate overlap hidden regions
2006-07-26 amwaterhouseRemove left, right, empty cols work on hidden reps
2006-07-25 amwaterhouseColumnSelection moved to datamodel
2006-07-25 amwaterhouseactiveRow is -1
2006-07-25 amwaterhouseOdd edit bug with represented seqs fixed
2006-07-25 amwaterhouseDont add pdb format here
2006-07-25 amwaterhouse1.1 compatible
2006-07-25 amwaterhouseMoved to datamodel
2006-07-25 amwaterhouseOutput menus added
2006-07-25 amwaterhouseRepaint
2006-07-25 amwaterhouseDont make new image unless resize
2006-07-25 amwaterhouseReorder popupmenu
2006-07-25 amwaterhouseRenamed files not to conflict with BIOJAVA
2006-07-25 amwaterhousejalview.biojava
2006-07-25 amwaterhousex < endres-startres
2006-07-25 amwaterhousex < endres-startres
2006-07-25 amwaterhouseAdd dbrefs to mouseover
2006-07-25 amwaterhouseMust be 1.1 compliant
2006-07-25 amwaterhouseRemove associate menu
2006-07-25 amwaterhouseFileLoader replaces paste when Dropping files
2006-07-25 amwaterhouseAssociate pdb files
2006-07-25 amwaterhousepdb fetchDataAsFile
2006-07-25 amwaterhousePDB format added
2006-07-25 amwaterhousepdb stuff moved to popupmenu
2006-07-25 amwaterhouseCan have local file
2006-07-25 amwaterhouseIf seq has a dataset, dont clear it
2006-07-25 amwaterhouseExtends AlignFile, dataset has PDBEntry added
2006-07-25 amwaterhouseCan load PDB file from disk
2006-07-24 jprocterpartly finished pods.
2006-07-21 amwaterhousecorrect icon draw bug
2006-07-21 amwaterhouseCorrected hidden row feature render bug
2006-07-21 amwaterhousePut DBRefFether in a new thread
2006-07-21 jprocterItem added to ignoreList
2006-07-21 jprocterItem added to ignoreList
2006-07-21 amwaterhouseRemove start end for now??
2006-07-21 amwaterhouseAdd pdb ref
2006-07-21 amwaterhousegetViewAsString can ignore sequenceGroup
2006-07-21 amwaterhousethis.seqs = seqs
2006-07-21 amwaterhousehidden seqs added
2006-07-21 amwaterhousedbrefs added
2006-07-21 amwaterhouseshow hide stuff moved from columnSelection
2006-07-21 amwaterhouseSaves hidden seqs and DBRefs
2006-07-21 amwaterhouseav.showHiddenMarkers check
2006-07-21 amwaterhouseShow hide cols and rows
2006-07-21 amwaterhouseHide Selected Cols
2006-07-21 amwaterhouseDBRefs now array
2006-07-21 amwaterhousegetFullAlignment
2006-07-21 amwaterhouseRemove note
2006-07-21 amwaterhouseDBRef is an array, not vector
2006-07-21 amwaterhouseDBRefs and HiddenRegions saved
2006-07-21 jprocterIgnore list created
2006-07-21 amwaterhouseLoad tree from file constructor fixed
2006-07-20 jprocterannotation label font size change in applet.
2006-07-19 amwaterhouseMake new seq[] when modifying hidden bits
2006-07-19 amwaterhouseRemove b keystroke
2006-07-19 amwaterhouseshowTranslation is not a checkbox
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