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jalview.git
2011-10-28 jprocter(JAL-889) ensure annotation row is revalidated after... commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-885,JAL-580) structure consensus should only be... commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-889) ensure latest version of RNA pairlist is... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-580 - display position where wuss parsing error... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-580 ensure WUSS annotation string is up to date... commit | commitdiff | tree | snapshot
2011-10-28 jprocteruse stack rather than vector and throw parse exceptions commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-580 ensure WUSS annotation is reparsed if necessary... commit | commitdiff | tree | snapshot
2011-10-28 jprocterNPE exception if annotation manually edited commit | commitdiff | tree | snapshot
2011-10-28 jprocterextend API commit | commitdiff | tree | snapshot
2011-10-28 jprocterrefactor to use model API commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-963) refactor RNA helix helper class to schemes commit | commitdiff | tree | snapshot
2011-10-27 jprocterMerge branch 'refactor_aligcalcs' into develop commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-969) efficiency commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-969) fix logic bug introduced during refactoring commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-969) removed TODOs commit | commitdiff | tree | snapshot
2011-10-27 jprocterrenamed menu entry to avoid field name clash commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-969) todo test re refactoring and possible change... commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to... commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-961) refactored consensus and rna structure consen... commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-961) use simplified notification logic to test... commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-961) methods for checking calculation status commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-961) more calculation annotation and result object... commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-967) ensure annotation panel is rendered with... commit | commitdiff | tree | snapshot
2011-10-21 jprocterRefactored alignment viewport to use common base, exten... commit | commitdiff | tree | snapshot
2011-10-21 jprocternew base class to hold core visualization settings... commit | commitdiff | tree | snapshot
2011-10-21 jproctertodo commit | commitdiff | tree | snapshot
2011-10-21 jprocterstatic convenience methods for constructing and calcula... commit | commitdiff | tree | snapshot
2011-10-21 jprocteruse List rather than Vector commit | commitdiff | tree | snapshot
2011-10-21 jprocterextend alignPanel api with OOMHandler call to raise... commit | commitdiff | tree | snapshot
2011-10-21 jprocterremove unnecessary import commit | commitdiff | tree | snapshot
2011-10-21 jprocterIntroduced new AlignCalcWorker/manager interface. commit | commitdiff | tree | snapshot
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into... commit | commitdiff | tree | snapshot
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade... commit | commitdiff | tree | snapshot
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups... commit | commitdiff | tree | snapshot
2011-10-21 jprocter(JAL-962) allow group visibility to be specified before... commit | commitdiff | tree | snapshot
2011-10-20 jprocter(JAL-963) jalviewLite RNA alignment example (reusing... commit | commitdiff | tree | snapshot
2011-10-18 jprocterMerge branch 'logo_feature_JAL-958' into develop commit | commitdiff | tree | snapshot
2011-10-18 jprocterbackout parts of the interface from another development... commit | commitdiff | tree | snapshot
2011-10-18 jprocterMerge branch 'logo_feature_JAL-958' into develop commit | commitdiff | tree | snapshot
2011-10-18 jprocter(Jalview 3) refactored Graphics2D annotation rendering... commit | commitdiff | tree | snapshot
2011-10-17 jprocterMerge branch 'logo_feature_JAL-958' into develop commit | commitdiff | tree | snapshot
2011-10-17 jprocter(ahem) new renderer package containing api and renderin... commit | commitdiff | tree | snapshot
2011-10-14 jprocterMerge branch 'logo_feature_JAL-958' into develop commit | commitdiff | tree | snapshot
2011-10-14 jprocter(JAL-958) documented normalised sequence logo parameter commit | commitdiff | tree | snapshot
2011-10-14 jprocter(JAL-958) - normalised sequence logo for applet commit | commitdiff | tree | snapshot
2011-10-11 jprocternormalised logo rendering (JAL-958) commit | commitdiff | tree | snapshot
2011-10-10 jprocter(JAL-957) change splash screen and about to HTML text... commit | commitdiff | tree | snapshot
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff | tree | snapshot
2011-10-07 jproctermerge Jan and Lauren's RNA GUI changes into develop... commit | commitdiff | tree | snapshot
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... commit | commitdiff | tree | snapshot
2011-10-03 jprocterMerge branch 'Release_2_7_Branch' commit | commitdiff | tree | snapshot
2011-10-03 jprocterredact previous commit - fileassociation tag not allowe... commit | commitdiff | tree | snapshot
2011-10-03 jprocterremoved unnecessary parameters and changed alignment... commit | commitdiff | tree | snapshot
2011-10-03 jproctercompile swingreader component for java 1.5 (JAL-948) commit | commitdiff | tree | snapshot
2011-09-28 jprocterMerge branch 'Release_2_7_Branch' Release_2_7 commit | commitdiff | tree | snapshot
2011-09-28 jprocterjnlps with and without file associations for default... commit | commitdiff | tree | snapshot
2011-09-28 jprocterbroken link. rearranged opening pg commit | commitdiff | tree | snapshot
2011-09-27 jproctertypo commit | commitdiff | tree | snapshot
2011-09-27 jprocterswitch to git release building commit | commitdiff | tree | snapshot
2011-09-27 jprocterpatch name, reference and URL for Multi-Harmony : JAL-724 commit | commitdiff | tree | snapshot
2011-09-27 jprocterensure server errors return a URL and response document... commit | commitdiff | tree | snapshot
2011-09-27 jprocteruse jalview properties preference to enable RSBS editor... commit | commitdiff | tree | snapshot
2011-09-27 jproctersame overzeaolous logic (JAL-915) commit | commitdiff | tree | snapshot
2011-09-27 jprocterstart of Release 2.7 commit | commitdiff | tree | snapshot
2011-09-27 jprocterJAL-944 - replaced stale PFAM links for 2.7 release... commit | commitdiff | tree | snapshot
2011-09-27 jprocterbackout overzealous logic disabling feature links in... commit | commitdiff | tree | snapshot
2011-09-27 jprocterNPE fix commit | commitdiff | tree | snapshot
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff | tree | snapshot
2011-09-26 jprocterexclude build artefacts from repository commit | commitdiff | tree | snapshot
2011-09-26 jprocterupdated documentation table of contents, menus and... commit | commitdiff | tree | snapshot
2011-09-26 jprocterdocumentation for news reader (JAL-943) commit | commitdiff | tree | snapshot
2011-09-26 jproctertweak installer with IA2010 - fixes installerObjects... commit | commitdiff | tree | snapshot
2011-09-26 jprocterfix jar dependency in InstallAnywhere commit | commitdiff | tree | snapshot
2011-09-26 jproctertidying classpath and fixing InstallAnywhere build commit | commitdiff | tree | snapshot
2011-09-26 jproctertweaked dialog layout. should consider refactoring commit | commitdiff | tree | snapshot
2011-09-26 jprocteradd new dependencies for 2.7 release commit | commitdiff | tree | snapshot
2011-09-26 jproctermake news window a modal dialog on the jalview desktop... commit | commitdiff | tree | snapshot
2011-09-26 jprocteravoid deprecation and ensure dialog close event is... commit | commitdiff | tree | snapshot
2011-09-25 jprocterorganise imports commit | commitdiff | tree | snapshot
2011-09-25 jproctermore focus fixing (JAL-943) commit | commitdiff | tree | snapshot
2011-09-25 jprocterfix logic to ensure first check for news is correct... commit | commitdiff | tree | snapshot
2011-09-23 jproctertry even harder to get focus - for benefit of windows... commit | commitdiff | tree | snapshot
2011-09-23 jprocterensure blog window gets put to front after dialogs... commit | commitdiff | tree | snapshot
2011-09-23 jprocterdebugged example file again - old version had view... commit | commitdiff | tree | snapshot
2011-09-22 jprocterrefactor and remove excess imports (JAL-943) commit | commitdiff | tree | snapshot
2011-09-22 jprocterjalview rss reader based on jswingreader (JAL-943) commit | commitdiff | tree | snapshot
2011-09-20 jprocterhelp documentation for Jalview 2.7 commit | commitdiff | tree | snapshot
2011-09-16 jprocterJAL-747 - made warning message friendlier and more... commit | commitdiff | tree | snapshot
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic... commit | commitdiff | tree | snapshot
2011-09-16 jprocternumerically ataxic comments. commit | commitdiff | tree | snapshot
2011-09-16 jprocterJAL-574 added option to enable/disable 'follow selectio... commit | commitdiff | tree | snapshot
2011-09-16 jprocterJAL-940 - removed legacy service options from preferenc... commit | commitdiff | tree | snapshot
2011-09-16 jprocterJAL-468 typo and label length in dialog commit | commitdiff | tree | snapshot
2011-09-16 jprocterpatch for JAL-935 - warning messages raised when alignm... commit | commitdiff | tree | snapshot
2011-09-16 jprocterJAL-468 JAL-936 sort alignment by tree and autosort... commit | commitdiff | tree | snapshot
2011-09-16 jproctertweak english commit | commitdiff | tree | snapshot
2011-09-15 jprocterdocumentation for new preferences (JAL-234 and web... commit | commitdiff | tree | snapshot
2011-09-15 jprocterdocumentation for JAL-234 commit | commitdiff | tree | snapshot
2011-09-15 jprocterJAL-860 fixed grammar for one structure vs many structu... commit | commitdiff | tree | snapshot
2011-09-15 jprocterJAL-854 tweaked menu layout so services appear before... commit | commitdiff | tree | snapshot
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