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jalview.git
2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 added help documentation for executable jar... commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3675 report JAL-3701 as known defect commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3675 release notes for JAL-3692 commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into... commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3692 fix up test for 2.11.1 series datamodel API commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 set CDS /product as EMBLCDSPROTEIN description commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 refactor/complete parsing, more unit test... commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 parse DE for description, and other refactoring... commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 URL tests updated commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3675 mention -open argument in the command line... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3675 JAL-3570 JAL-3608 JAL-2983 release notes and... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3675 update release note for JAL-2656 commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3615 and JAL-2656 commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-2656 JAL-3615 check response headers to test for... commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea... commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3621 commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-3621 corrected sequence feature sort and test commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-3621 update to intervalstore v1.1 commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3695 JAL-3696 JAL-3697 commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to... commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,... commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3570 JAL-3187 spanish translations for tabbed featu... commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3570 updated external help links commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterMerge branch 'merge/JAL-3609_and_JAL-3608' into release... commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterJAL-3675 version update and documentation for JAL-3493... commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterJAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in... commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterJAL-3638 don’t move cursor to next gap after moving... commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterJAL-3680 check whether a sequence selection exists... commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterJAL-3638 shift+arrow keys in cursor mode jumps cursor... commit | commitdiff | tree | snapshot
2020-07-01 Ben SoaresJAL-3609 Allow pass-through of setHiDPIScale property... commit | commitdiff | tree | snapshot
2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_... commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3675 2.11.1.1 release notes commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterMerge branch 'patch/Clear_Highlight_JAL-3493' into... commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3493 failing test - creates a highlight and column... commit | commitdiff | tree | snapshot
2020-06-21 Ben SoaresJAL-3609 Report when scale setting used. commit | commitdiff | tree | snapshot
2020-06-21 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI.... commit | commitdiff | tree | snapshot
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick commit | commitdiff | tree | snapshot
2020-06-16 Ben SoaresJAL-3608 formatting save only commit | commitdiff | tree | snapshot
2020-06-16 Ben SoaresJAL-3608 formatting save only commit | commitdiff | tree | snapshot
2020-05-22 soaresJAL-3609 corrected maxdimension to mindimension. Adjust... commit | commitdiff | tree | snapshot
2020-05-20 Ben SoaresJAL-3609 removed debugging prints commit | commitdiff | tree | snapshot
2020-05-19 Ben SoaresJAL-3609 changed property names to something more palat... commit | commitdiff | tree | snapshot
2020-05-19 Ben SoaresJAL-3609 system properties to force a scale, or automat... commit | commitdiff | tree | snapshot
2020-05-19 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly... commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3613 remove debug code committed in error commit | commitdiff | tree | snapshot
2020-05-15 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... commit | commitdiff | tree | snapshot
2020-05-01 gmungocMerge branch 'bug/JAL-3613emblCDSTracking' into release... commit | commitdiff | tree | snapshot
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... Release_2_11_1_0 commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy commit | commitdiff | tree | snapshot
2020-04-21 Ben SoaresJAL-3577 changed default RELEASE dir in build.gradle... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report... commit | commitdiff | tree | snapshot
2020-04-21 Ben SoaresJAL-3577 Added newer install dirs to the deletion list... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-367 code tidy commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide commit | commitdiff | tree | snapshot
2020-04-17 gmungocJAL-3567 unit tests for linked feature tooltips commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 adjust layout of linked feature report, unit... commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 added 'imputed by Jalview' to protein conseque... commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 report mapped location for virtual features... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3407 JAL-3529 release notes commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflec... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3597 improved Memory test suite by detecting base... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3407 release date set to 16th April, known issue... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'testing/JAL-3577_jalviewversion_autoset_f... commit | commitdiff | tree | snapshot
2020-04-13 gmungocJAL-3574 test coverage corners bug/JAL-3574filterByPOS commit | commitdiff | tree | snapshot
2020-04-13 gmungocJAL-3574 Matcher with integer/long value pattern (e... commit | commitdiff | tree | snapshot
2020-04-12 gmungocJAL-3596 change redacted commit | commitdiff | tree | snapshot
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