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jalview.git
2006-07-28
amwaterhouse
Add transparency
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2006-07-28
amwaterhouse
output source in gff file
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2006-07-27
amwaterhouse
Send gapChar to print original Data
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2006-07-27
amwaterhouse
Remove immediate call to repaint when deleting
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2006-07-27
amwaterhouse
seq size cant be less than 2 for tree
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2006-07-27
amwaterhouse
Sends gapChar to seqData
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2006-07-27
amwaterhouse
remove unnecessary constructor
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2006-07-27
amwaterhouse
Remove unnecessary imports
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2006-07-27
amwaterhouse
Reset das_registry_url if null or empty
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2006-07-27
amwaterhouse
Dont set pdb file if it doenst exist
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2006-07-27
amwaterhouse
NOR the <pre> tabs
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2006-07-27
amwaterhouse
Use DBRefSource.PDB
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2006-07-27
amwaterhouse
Save PDB file to disk
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2006-07-27
amwaterhouse
Readline instead of bit by bit
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2006-07-27
amwaterhouse
Cant have col less than 0
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2006-07-27
amwaterhouse
Save ref to pdb file
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2006-07-27
amwaterhouse
Readded
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2006-07-26
jprocter
accidental commit of a build
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2006-07-26
amwaterhouse
PDB file MUST have an id
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2006-07-26
amwaterhouse
not used
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2006-07-26
amwaterhouse
Load and save PDB files
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2006-07-26
amwaterhouse
Add file ref for pdb files
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2006-07-26
jprocter
Ignore list created
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2006-07-26
jprocter
Cigars for representing alignment view as used for...
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2006-07-26
jprocter
CigarBase class and derivatives.
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2006-07-26
jprocter
Implemented CIGAR representation of an Alignment view...
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2006-07-26
jprocter
Compact Idiosyncratic Gapped Alignment Representation...
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2006-07-26
amwaterhouse
Switch to new srs url
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2006-07-26
amwaterhouse
seqs[j] replaces current
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2006-07-26
amwaterhouse
moved to org.biojava
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2006-07-26
amwaterhouse
back to org.biojava
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2006-07-26
amwaterhouse
Back to org.biojava
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2006-07-26
amwaterhouse
Column hide/show updated
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2006-07-26
amwaterhouse
Calculate overlap hidden regions
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2006-07-26
amwaterhouse
Remove left, right, empty cols work on hidden reps
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2006-07-25
amwaterhouse
ColumnSelection moved to datamodel
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2006-07-25
amwaterhouse
activeRow is -1
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2006-07-25
amwaterhouse
Odd edit bug with represented seqs fixed
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2006-07-25
amwaterhouse
Dont add pdb format here
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2006-07-25
amwaterhouse
1.1 compatible
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2006-07-25
amwaterhouse
Moved to datamodel
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2006-07-25
amwaterhouse
Output menus added
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2006-07-25
amwaterhouse
Repaint
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2006-07-25
amwaterhouse
Dont make new image unless resize
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2006-07-25
amwaterhouse
Reorder popupmenu
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2006-07-25
amwaterhouse
Renamed files not to conflict with BIOJAVA
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2006-07-25
amwaterhouse
jalview.biojava
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2006-07-25
amwaterhouse
x < endres-startres
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2006-07-25
amwaterhouse
x < endres-startres
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2006-07-25
amwaterhouse
Add dbrefs to mouseover
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2006-07-25
amwaterhouse
Must be 1.1 compliant
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2006-07-25
amwaterhouse
Remove associate menu
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2006-07-25
amwaterhouse
FileLoader replaces paste when Dropping files
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2006-07-25
amwaterhouse
Associate pdb files
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2006-07-25
amwaterhouse
pdb fetchDataAsFile
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2006-07-25
amwaterhouse
PDB format added
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2006-07-25
amwaterhouse
pdb stuff moved to popupmenu
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2006-07-25
amwaterhouse
Can have local file
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2006-07-25
amwaterhouse
If seq has a dataset, dont clear it
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2006-07-25
amwaterhouse
Extends AlignFile, dataset has PDBEntry added
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2006-07-25
amwaterhouse
Can load PDB file from disk
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2006-07-24
jprocter
partly finished pods.
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2006-07-21
amwaterhouse
correct icon draw bug
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2006-07-21
amwaterhouse
Corrected hidden row feature render bug
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2006-07-21
amwaterhouse
Put DBRefFether in a new thread
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2006-07-21
jprocter
Item added to ignoreList
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2006-07-21
jprocter
Item added to ignoreList
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2006-07-21
amwaterhouse
Remove start end for now??
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2006-07-21
amwaterhouse
Add pdb ref
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2006-07-21
amwaterhouse
getViewAsString can ignore sequenceGroup
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2006-07-21
amwaterhouse
this.seqs = seqs
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2006-07-21
amwaterhouse
hidden seqs added
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2006-07-21
amwaterhouse
dbrefs added
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2006-07-21
amwaterhouse
show hide stuff moved from columnSelection
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2006-07-21
amwaterhouse
Saves hidden seqs and DBRefs
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2006-07-21
amwaterhouse
av.showHiddenMarkers check
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2006-07-21
amwaterhouse
Show hide cols and rows
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2006-07-21
amwaterhouse
Hide Selected Cols
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2006-07-21
amwaterhouse
DBRefs now array
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2006-07-21
amwaterhouse
getFullAlignment
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2006-07-21
amwaterhouse
Remove note
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2006-07-21
amwaterhouse
DBRef is an array, not vector
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2006-07-21
amwaterhouse
DBRefs and HiddenRegions saved
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2006-07-21
jprocter
Ignore list created
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2006-07-21
amwaterhouse
Load tree from file constructor fixed
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2006-07-20
jprocter
annotation label font size change in applet.
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2006-07-19
amwaterhouse
Make new seq[] when modifying hidden bits
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2006-07-19
amwaterhouse
Remove b keystroke
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2006-07-19
amwaterhouse
showTranslation is not a checkbox
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2006-07-19
amwaterhouse
Merge new frame buttons added
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2006-07-19
amwaterhouse
Output to text window added
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2006-07-19
amwaterhouse
Correct highlighted res height
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2006-07-19
amwaterhouse
Save output use whole alignment
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2006-07-19
amwaterhouse
Original tree data output in PFAM format
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2006-07-19
amwaterhouse
Count uniprot refs
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2006-07-19
amwaterhouse
Highlight hidden columns after revealing
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2006-07-19
amwaterhouse
datasetSeq bug
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2006-07-19
amwaterhouse
Check for all gapped seqs
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2006-07-19
amwaterhouse
Use Selection group to define sequence range to fetch...
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2006-07-19
amwaterhouse
Copy works with selection area
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