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jalview.git
2016-04-25 tcofoegbudevelop merge commit | commitdiff | tree | snapshot
2016-04-25 tcofoegbuJAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search commit | commitdiff | tree | snapshot
2016-04-22 tcofoegbuJAL-1563 JAL-2071 Update and completed implementation... commit | commitdiff | tree | snapshot
2016-04-22 tcofoegbuJAL-2071 further refactoring, optimisation, and house... commit | commitdiff | tree | snapshot
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free... commit | commitdiff | tree | snapshot
2016-04-14 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-14 tcofoegbuJAL-1994 Removed redistributed plugin.jar from applet... commit | commitdiff | tree | snapshot
2016-04-13 Jim ProcterJAL-2046 fix: patched SeqsetUtils so sequence features... commit | commitdiff | tree | snapshot
2016-04-13 Jim ProcterJAL-2046 test to demonstrate feature duplication bug commit | commitdiff | tree | snapshot
2016-04-13 Jim ProcterMerge branch 'bug/JAL-2046_ds_sharing_features_broken... commit | commitdiff | tree | snapshot
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test commit | commitdiff | tree | snapshot
2016-04-13 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-13 tcofoegbuJAL-1270 Fixed failing tests due to race conditions... commit | commitdiff | tree | snapshot
2016-04-13 tcofoegbuJAL-2047 delay to allow table model initilisation to... commit | commitdiff | tree | snapshot
2016-04-12 gmungocJAL-2050 only hide introns if exons are present! Remove... commit | commitdiff | tree | snapshot
2016-04-12 gmungocJAL-2049 separate protein variant per dna variant ... commit | commitdiff | tree | snapshot
2016-04-11 gmungocJAL-1705 code/comment tidy only commit | commitdiff | tree | snapshot
2016-04-11 gmungocJAL-2051 fetch Ensembl Gene accessions one at a time commit | commitdiff | tree | snapshot
2016-04-11 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-11 tcofoegbuJAL-2054 Renamed getStartEnd in AlignFrame to getVisibl... commit | commitdiff | tree | snapshot
2016-04-11 gmungocJAL-391 help for reverse / complement options commit | commitdiff | tree | snapshot
2016-04-11 gmungocJAL-1705 (new preference option to) hide introns when... commit | commitdiff | tree | snapshot
2016-04-11 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-11 tcofoegbuRestored auto-deleted file from commit: ad54c1ae5bc1b93... commit | commitdiff | tree | snapshot
2016-04-08 Jim ProcterMerge branch 'feature/JAL-2050_intronhidden' into develop commit | commitdiff | tree | snapshot
2016-04-08 Jim ProcterJAL-2050 JAL-1722 new getSelectedRange() method to... commit | commitdiff | tree | snapshot
2016-04-08 Jim ProcterJAL-2053 fix erratic hidden column marker display commit | commitdiff | tree | snapshot
2016-04-08 Jim ProcterJAL-2053 JAL-1551 javadoc and simpler code commit | commitdiff | tree | snapshot
2016-04-07 Jim ProcterJAL-1722 fix: don’t draw visible regions outside viewpo... commit | commitdiff | tree | snapshot
2016-04-06 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-04-06 tcofoegbuJAL-2047 JAL-1919 fixed empty tooltip text when a cell... commit | commitdiff | tree | snapshot
2016-04-06 tcofoegbuJAL-1960 updated test to capture new behaviour improvement commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 RFC about cyclic dataset sequence references... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 revise test for ambiguous case commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 ambiguous test for addSequenceFeature when... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 RFC on addSequenceFeature behaviour after... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 test behaviour of copy constructor in differen... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 add/delete SequenceFeature operate on dataset... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 setSequenceFeature contract implementation... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 explicit contract for get/set SequenceFeatures... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 remove javadoc commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 simpler deriveSequence - promote to dataset... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 clarify contract for copy constructor and... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 explicitly copy char[] when cloning sequence... commit | commitdiff | tree | snapshot
2016-04-05 Jim ProcterJAL-2046 safer createDatasetSequence manipulates privat... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2046 basic test to make sure any derived sequence... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterMerge branch 'optimisation/JAL-2001' into develop commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 drop isSelected(int) in favour of original... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 catch -ve column values commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 TODO for new ColumnSelection API commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 - note about possible side effect on JalviewLi... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2010 refactoring todo commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 use fast column selection test commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 faster check for a column being selected commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 javadoc commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 faster getMax/getMin selected column, with... commit | commitdiff | tree | snapshot
2016-04-04 Jim ProcterJAL-2001 JAL-1722 - store selection as ArrayList and... commit | commitdiff | tree | snapshot
2016-04-01 gmungocMerge branch 'features/JAL-653_JAL-1766_htslib_refseqsu... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 ensure the right mapping is used to align... commit | commitdiff | tree | snapshot
2016-04-01 tcofoegbuJAL-2048 Update to structureviz2 package from cytoscape commit | commitdiff | tree | snapshot
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-2046 fix for broken test for deriveSequence commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 reworked AlignmentUtils.makeCdsAlignment and... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-653 updated test to match parsing of multi-valued... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 tweak to MapList.toString for debugging commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 test updated for canonicalised UNIPROT sequenc... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 include stop codon in mapped CDS range so... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-2037 set DBRefEntry.version to "0" not "" in EMBL... commit | commitdiff | tree | snapshot
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms) commit | commitdiff | tree | snapshot
2016-04-01 tcofoegbuJAL-2045 JAL-2047 improvement for sorting PDB quality... commit | commitdiff | tree | snapshot
2016-03-31 tcofoegbuJAL-2035 improvement to add binding to multiple model commit | commitdiff | tree | snapshot
2016-03-30 tcofoegbuJAL-1668 further clean-up of popup menu and NPE check... commit | commitdiff | tree | snapshot
2016-03-30 tcofoegbuJAL-2038 bug fix for NPE while setting progress message... commit | commitdiff | tree | snapshot
2016-03-28 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-03-28 tcofoegbuJAL-1919 Fixed broken test in DBRefUtilsTest commit | commitdiff | tree | snapshot
2016-03-28 tcofoegbuJAL-1668 removed redundant UI elements in PopupMenu... commit | commitdiff | tree | snapshot
2016-03-28 gmungocJAL-1705 Javadoc / debug output tweaks commit | commitdiff | tree | snapshot
2016-03-28 gmungocJAL-2016 push getFeatureColourScheme(source) into Seque... commit | commitdiff | tree | snapshot
2016-03-28 gmungocJAL-2036 update AlignFrame menus when dbreffetcher... commit | commitdiff | tree | snapshot
2016-03-25 tcofoegbuJAL-2035 improvement to bind Jalview to Chimera model... commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbuJAL-1919 Settings to disable duplicate generation of... commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbuJAL-1479 Commented out debug sysout's for SiftsClient commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbuJAL-1919 Added ability to generate temprature factor... commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbufixed applet build commit | commitdiff | tree | snapshot
2016-03-24 gmungocJAL-1705 removed experimental 'highlight selection... commit | commitdiff | tree | snapshot
2016-03-24 gmungocJAL-2032 structure follow mouseover in a copy of a... commit | commitdiff | tree | snapshot
2016-03-24 tcofoegbuJAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB commit | commitdiff | tree | snapshot
2016-03-23 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... commit | commitdiff | tree | snapshot
2016-03-23 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-03-23 gmungocJAL-1705 add DBRefEntry for 'self' to retrieved transcr... commit | commitdiff | tree | snapshot
2016-03-23 gmungocJAL-1997 default empty tooltip required for correct... commit | commitdiff | tree | snapshot
2016-03-22 tcofoegburesolve conflict with Mungo's merge commit | commitdiff | tree | snapshot
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... commit | commitdiff | tree | snapshot
2016-03-22 gmungocMerge branch 'features/JAL-653_JAL-1766_htslib_refseqsu... commit | commitdiff | tree | snapshot
2016-03-22 gmungocJAL-1705 add xref seqs to 'parent' dataset only if... commit | commitdiff | tree | snapshot
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