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jalview.git
2020-10-29 Ben SoaresJAL-3248 Fixed path typos in building.md/html and corre... commit | commitdiff | tree | snapshot
2020-10-28 Jim ProcterMerge branch 'bug/JAL-3760_protsTreatedAsNucleotides... commit | commitdiff | tree | snapshot
2020-10-28 Ben SoaresJAL-3248 Added step to create the eclipse files before... commit | commitdiff | tree | snapshot
2020-10-21 Jim ProcterJAL-3766 release notes for JAL-3611 JAL-3765 commit | commitdiff | tree | snapshot
2020-10-21 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of source... commit | commitdiff | tree | snapshot
2020-10-21 Jim ProcterMerge branch 'bug/JAL-3765_Find_bugs_in_21112' into... commit | commitdiff | tree | snapshot
2020-10-21 Jim ProcterJAL-3766 cut new patch release commit | commitdiff | tree | snapshot
2020-10-20 Jim ProcterJAL-3765 fix test bug/JAL-3765_Find_bugs_in_21112 commit | commitdiff | tree | snapshot
2020-10-20 Jim Procterfix for JAL-3765 commit | commitdiff | tree | snapshot
2020-10-19 Jim ProcterJAL-3765 simple test that findAll finds all matches... commit | commitdiff | tree | snapshot
2020-10-15 Ben SoaresJAL-3611 added quotation marks for appdir argument... commit | commitdiff | tree | snapshot
2020-09-29 Jim ProcterJAL-3760 fix tests for changed behaviour bug/JAL-3760_protsTreatedAsNucleotides commit | commitdiff | tree | snapshot
2020-09-29 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... commit | commitdiff | tree | snapshot
2020-09-25 Ben SoaresJAL-3577 Removed default JALVIEW_VERSION from gradle... commit | commitdiff | tree | snapshot
2020-09-25 Jim ProcterJAL-3758 tweak what’s new for 2.11.1.2! Release_2_11_1_2 commit | commitdiff | tree | snapshot
2020-09-25 Jim ProcterJAL-3758 release Fri 25th Sep commit | commitdiff | tree | snapshot
2020-09-25 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of source... commit | commitdiff | tree | snapshot
2020-09-24 Ben SoaresJAL-3577 Quick fix adding quotation marks for findPrope... commit | commitdiff | tree | snapshot
2020-09-24 Jim ProcterJAL-3758 2.11.1.2 patch release notes and version bump commit | commitdiff | tree | snapshot
2020-09-24 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to... commit | commitdiff | tree | snapshot
2020-09-23 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... commit | commitdiff | tree | snapshot
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls commit | commitdiff | tree | snapshot
2020-09-17 Jim ProcterJAL-3675 release notes for JAL-3750 JAL-3751 Release_2_11_1_1 commit | commitdiff | tree | snapshot
2020-09-17 Jim ProcterMerge branch 'patch/JAL-3750_JAL-3741_https_patch'... commit | commitdiff | tree | snapshot
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... commit | commitdiff | tree | snapshot
2020-09-17 Jim ProcterJAL-3750 parse protocol before checking if argument... commit | commitdiff | tree | snapshot
2020-09-17 Jim ProcterJAL-3675 patch release date 17th September 2020 commit | commitdiff | tree | snapshot
2020-09-15 Jim ProcterJAL-3675 logged JAL-3748 as known defect commit | commitdiff | tree | snapshot
2020-09-15 Jim ProcterJAL-3765 JAL-3718 release notes commit | commitdiff | tree | snapshot
2020-09-15 Jim ProcterMerge branch 'patch/JAL-3718_fixed_getdown_patched_for_... commit | commitdiff | tree | snapshot
2020-09-15 Ben SoaresJAL-3718 Fixed getdown auto-update. This commit Getdown... commit | commitdiff | tree | snapshot
2020-09-15 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when... commit | commitdiff | tree | snapshot
2020-09-15 Jim ProcterJAL-3675 typo in release notes :( commit | commitdiff | tree | snapshot
2020-09-15 Jim ProcterJAL-3675 update release date and release notes for... commit | commitdiff | tree | snapshot
2020-09-03 gmungocJAL-3648 resize annotation panel after dragging to... commit | commitdiff | tree | snapshot
2020-09-03 Jim ProcterJAL-3675 update release date and release notes for... commit | commitdiff | tree | snapshot
2020-09-03 Jim ProcterMerge branch 'improvement/JAL-3280_Migrate_the_VersionC... commit | commitdiff | tree | snapshot
2020-09-03 Jim ProcterJAL-3675 whats new, logging and release notes tidying... commit | commitdiff | tree | snapshot
2020-09-03 Jim ProcterJAL-3676 rework logging docs. commit | commitdiff | tree | snapshot
2020-09-03 Jim ProcterMerge branch 'bug/JAL-3718_Getdown_does_not_autoupdate_... commit | commitdiff | tree | snapshot
2020-09-03 Jim ProcterJAL-3676 remove mention of Castor commit | commitdiff | tree | snapshot
2020-09-03 Jim ProcterJAL-3675 tweak release notes for JAL-3667, JAL-3702 commit | commitdiff | tree | snapshot
2020-09-03 Jim ProcterJAL-3675 update sequence fetcher service documentation... commit | commitdiff | tree | snapshot
2020-09-02 Ben SoaresJAL-3280 Test for remote release build_properties file... commit | commitdiff | tree | snapshot
2020-09-01 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... commit | commitdiff | tree | snapshot
2020-08-31 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... commit | commitdiff | tree | snapshot
2020-08-31 Jim ProcterJAL-3680 merged description of individual cursor key... commit | commitdiff | tree | snapshot
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor... commit | commitdiff | tree | snapshot
2020-08-28 Ben SoaresJAL-3676 adding Axis and Castor loggging properties... commit | commitdiff | tree | snapshot
2020-08-27 Ben SoaresJAL-3676 Documentation in Help for Java Console, Loggin... commit | commitdiff | tree | snapshot
2020-08-27 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch commit | commitdiff | tree | snapshot
2020-08-25 Jim Procterreport JAL-3127 as known defect (fix targeted for 2... commit | commitdiff | tree | snapshot
2020-08-25 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... commit | commitdiff | tree | snapshot
2020-08-21 Jim ProcterJAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615... commit | commitdiff | tree | snapshot
2020-08-18 Ben SoaresJAL-3718 Added digestonly key to getdown.txt to copy... commit | commitdiff | tree | snapshot
2020-08-18 gmungocJAL-3692 parse multiline CDS location correctly commit | commitdiff | tree | snapshot
2020-08-18 Ben SoaresJAL-3676 Start of documentation in help pages logging... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3675 release notes for JAL-3691 commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3691_No_score_models_available... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3675 JAL-3561 documented in release notes commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3675 report JAL-3702 as known defect commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3561_JAL-3660_fileformatexport_... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3712 fix typos for rebuilding/updating getdown... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3490 JAL-3675 release notes, update Find dialog... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterMerge branch 'patch/Release_2_11_1_Branch_patch_JAL... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3675 JAL-3597 release notes commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3597_for_Release_2_11_1_Branch... commit | commitdiff | tree | snapshot
2020-08-14 Ben SoaresJAL-3676 More explicit tooltip about resetting log... commit | commitdiff | tree | snapshot
2020-08-13 Ben SoaresJAL-3597 Increased heap passmark to <= 45MB and report... commit | commitdiff | tree | snapshot
2020-08-13 gmungocJAL-3597 slight tidying of code and Javadoc, passmark... commit | commitdiff | tree | snapshot
2020-08-13 gmungocJAL-3597 additional references nulled, bug in test... commit | commitdiff | tree | snapshot
2020-08-13 Jim ProcterJAL-3675 brought forward patch to build.gradle for... commit | commitdiff | tree | snapshot
2020-08-13 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of source... commit | commitdiff | tree | snapshot
2020-08-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for... commit | commitdiff | tree | snapshot
2020-08-12 Jim ProcterJAL-3675 added JAL-3576 as known defect (colocated... commit | commitdiff | tree | snapshot
2020-08-12 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 commit | commitdiff | tree | snapshot
2020-08-11 Jim ProcterJAL-3675 fix issue attribution for JAL-3667 release... commit | commitdiff | tree | snapshot
2020-08-11 Jim ProcterJAL-3675 update release notes for JAL-3673 and tested... commit | commitdiff | tree | snapshot
2020-08-11 Jim ProcterJAL-3673 make sure font metrics are updated if dealing... commit | commitdiff | tree | snapshot
2020-08-11 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea... commit | commitdiff | tree | snapshot
2020-08-11 gmungocJAL-3371 more fine-grained slider; set Param slider... commit | commitdiff | tree | snapshot
2020-08-10 gmungocJAL-3490 match count independent of contiguous matches... patch/Release_2_11_1_Branch_patch_JAL-3490 commit | commitdiff | tree | snapshot
2020-08-10 Jim ProcterJAL-3691 toUpperCase(Locale.ROOT) for all standard... commit | commitdiff | tree | snapshot
2020-08-10 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' into... commit | commitdiff | tree | snapshot
2020-08-10 Jim ProcterJAL-3628 JAL-3708 call Cache.initLogger() before using... commit | commitdiff | tree | snapshot
2020-08-05 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterJAL-3628 init log after loading testProps for each... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into... commit | commitdiff | tree | snapshot
2020-08-05 gmungocJAL-3692 unit test updated for ?gzip download endpoint URL patch/JAL-3692enaEndpointFlatfile commit | commitdiff | tree | snapshot
2020-08-05 gmungocJAL-3692 parse multiline feature qualifiers and escaped... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterJAL-3675 release notes for JAL-3477, JAL-3667, JAL... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 added help documentation for executable jar... commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3675 report JAL-3701 as known defect commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3675 release notes for JAL-3692 commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into... commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3692 fix up test for 2.11.1 series datamodel API commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 set CDS /product as EMBLCDSPROTEIN description commit | commitdiff | tree | snapshot
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