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jalview.git
2020-08-11 gmungocJAL-3706 handle e.g. mapped exon feature extending... bug/JAL-3706virtualStopCodon commit | commitdiff | tree | snapshot
2020-08-10 gmungocJAL-3706 handle virtual feature extending to unmapped... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterJAL-3628 init log after loading testProps for each... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into... commit | commitdiff | tree | snapshot
2020-08-05 gmungocJAL-3692 unit test updated for ?gzip download endpoint URL patch/JAL-3692enaEndpointFlatfile commit | commitdiff | tree | snapshot
2020-08-05 gmungocJAL-3692 parse multiline feature qualifiers and escaped... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterJAL-3675 release notes for JAL-3477, JAL-3667, JAL... commit | commitdiff | tree | snapshot
2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 added help documentation for executable jar... commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3675 report JAL-3701 as known defect commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3675 release notes for JAL-3692 commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into... commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterJAL-3692 fix up test for 2.11.1 series datamodel API commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 set CDS /product as EMBLCDSPROTEIN description commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 refactor/complete parsing, more unit test... commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 parse DE for description, and other refactoring... commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 URL tests updated commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3675 mention -open argument in the command line... commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3675 JAL-3570 JAL-3608 JAL-2983 release notes and... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3675 update release note for JAL-2656 commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3615 and JAL-2656 commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-2656 JAL-3615 check response headers to test for... commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea... commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3621 commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-3621 corrected sequence feature sort and test commit | commitdiff | tree | snapshot
2020-07-27 gmungocJAL-3621 update to intervalstore v1.1 commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3695 JAL-3696 JAL-3697 commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to... commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,... commit | commitdiff | tree | snapshot
2020-07-08 Ben SoaresMerge branch 'bug/JAL-3541_cherry_pick_to_releases_Rele... commit | commitdiff | tree | snapshot
2020-07-08 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... commit | commitdiff | tree | snapshot
2020-07-08 Ben SoaresMerge branch 'task/JAL-3609_HiDPI_support_in_java'... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 ensure deletion of cloverReportDir commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 small fix for clover.xml location expected... commit | commitdiff | tree | snapshot
2020-07-07 soaresJAL-3541 added a property/variable style comment to... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 Fixed report path for build artifacts commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 Added mem setting and jvmArgs for cloverReporting commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 Individual tests now instrumented and reported... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 Helpers for running tests, and other commands... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 JavaExec tasks for cloverInstr and cloverRepor... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 increase maxheapsize for test worker process commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 tidying build.gradle, delete cloverInstrDir... commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 perhaps a better clean for clover. fixed commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 perhaps a better clean for clover commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3541 rejigged clover tasks very mildly commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3685 Fixed single quotes in formatMessage messages commit | commitdiff | tree | snapshot
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3676 improvement for visual selection of console... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3628 improvement for visual selection of console... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3628 Fix for slightly incorrect boolean usage to... commit | commitdiff | tree | snapshot
2020-07-06 Ben SoaresJAL-3628 Even more Cache.log.debug statements commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3570 JAL-3187 spanish translations for tabbed featu... commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3570 updated external help links commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterMerge branch 'merge/JAL-3609_and_JAL-3608' into release... commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterJAL-3675 version update and documentation for JAL-3493... commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterJAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in... commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterJAL-3638 don’t move cursor to next gap after moving... commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterJAL-3680 check whether a sequence selection exists... commit | commitdiff | tree | snapshot
2020-07-04 Jim ProcterJAL-3638 shift+arrow keys in cursor mode jumps cursor... commit | commitdiff | tree | snapshot
2020-07-04 Ben SoaresJAL-3628 More Cache.log.debug statements commit | commitdiff | tree | snapshot
2020-07-02 Ben SoaresJAL-3676 code review -- added non-listed Level into... commit | commitdiff | tree | snapshot
2020-07-01 Ben SoaresJAL-3609 Allow pass-through of setHiDPIScale property... commit | commitdiff | tree | snapshot
2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_... commit | commitdiff | tree | snapshot
2020-06-30 Ben SoaresJAL-3676 Added Log Level ComboBox and Copy to Clipboard... commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3675 2.11.1.1 release notes commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterMerge branch 'patch/Clear_Highlight_JAL-3493' into... commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3493 failing test - creates a highlight and column... commit | commitdiff | tree | snapshot
2020-06-24 Ben SoaresJAL-3667 Fixed single backupfile error deleting the... commit | commitdiff | tree | snapshot
2020-06-21 Ben SoaresJAL-3609 Report when scale setting used. commit | commitdiff | tree | snapshot
2020-06-21 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI.... commit | commitdiff | tree | snapshot
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick commit | commitdiff | tree | snapshot
2020-06-16 Ben SoaresJAL-3608 formatting save only commit | commitdiff | tree | snapshot
2020-06-16 Ben SoaresJAL-3608 formatting save only commit | commitdiff | tree | snapshot
2020-06-15 Ben SoaresJAL-3628 Changed other calls to renameTo to use BackupF... commit | commitdiff | tree | snapshot
2020-06-08 Ben SoaresJAL-3628 Changed all file1.renameTo(file2) calls to... commit | commitdiff | tree | snapshot
2020-05-22 soaresJAL-3609 corrected maxdimension to mindimension. Adjust... commit | commitdiff | tree | snapshot
2020-05-20 Ben SoaresJAL-3609 removed debugging prints commit | commitdiff | tree | snapshot
2020-05-19 Ben SoaresJAL-3609 changed property names to something more palat... commit | commitdiff | tree | snapshot
2020-05-19 Ben SoaresJAL-3609 system properties to force a scale, or automat... commit | commitdiff | tree | snapshot
2020-05-19 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly... commit | commitdiff | tree | snapshot
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