src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.schemabinding.version2.descriptors;
  22
  23   //---------------------------------/
  24  //- Imported classes and packages -/
  25 //---------------------------------/
  26
  27 import jalview.schemabinding.version2.Annotation;
  28
  29 /**
  30  * Class AnnotationDescriptor.
  31  *
  32  * @version $Revision$ $Date$
  33  */
  34 public class AnnotationDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
  35
  36
  37       //--------------------------/
  38      //- Class/Member Variables -/
  39     //--------------------------/
  40
  41     /**
  42      * Field _elementDefinition.
  43      */
  44     private boolean _elementDefinition;
  45
  46     /**
  47      * Field _nsPrefix.
  48      */
  49     private java.lang.String _nsPrefix;
  50
  51     /**
  52      * Field _nsURI.
  53      */
  54     private java.lang.String _nsURI;
  55
  56     /**
  57      * Field _xmlName.
  58      */
  59     private java.lang.String _xmlName;
  60
  61
  62       //----------------/
  63      //- Constructors -/
  64     //----------------/
  65
  66     public AnnotationDescriptor() {
  67         super();
  68         _nsURI = "www.vamsas.ac.uk/jalview/version2";
  69         _xmlName = "Annotation";
  70         _elementDefinition = true;
  71
  72         //-- set grouping compositor
  73         setCompositorAsSequence();
  74         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
  75         org.exolab.castor.mapping.FieldHandler             handler        = null;
  76         org.exolab.castor.xml.FieldValidator               fieldValidator = null;
  77         //-- initialize attribute descriptors
  78
  79         //-- _graph
  80         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_graph", "graph", org.exolab.castor.xml.NodeType.Attribute);
  81         handler = new org.exolab.castor.xml.XMLFieldHandler() {
  82             public java.lang.Object getValue( java.lang.Object object )
  83                 throws IllegalStateException
  84             {
  85                 Annotation target = (Annotation) object;
  86                 if (!target.hasGraph()) { return null; }
  87                 return (target.getGraph() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
  88             }
  89             public void setValue( java.lang.Object object, java.lang.Object value)
  90                 throws IllegalStateException, IllegalArgumentException
  91             {
  92                 try {
  93                     Annotation target = (Annotation) object;
  94                     // ignore null values for non optional primitives
  95                     if (value == null) { return; }
  96
  97                     target.setGraph( ((java.lang.Boolean) value).booleanValue());
  98                 } catch (java.lang.Exception ex) {
  99                     throw new IllegalStateException(ex.toString());
 100                 }
 101             }
 102             public java.lang.Object newInstance(java.lang.Object parent) {
 103                 return null;
 104             }
 105         };
 106         desc.setHandler(handler);
 107         desc.setRequired(true);
 108         desc.setMultivalued(false);
 109         addFieldDescriptor(desc);
 110
 111         //-- validation code for: _graph
 112         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 113         fieldValidator.setMinOccurs(1);
 114         { //-- local scope
 115             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 116             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 117             fieldValidator.setValidator(typeValidator);
 118         }
 119         desc.setValidator(fieldValidator);
 120         //-- _graphType
 121         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphType", "graphType", org.exolab.castor.xml.NodeType.Attribute);
 122         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 123             public java.lang.Object getValue( java.lang.Object object )
 124                 throws IllegalStateException
 125             {
 126                 Annotation target = (Annotation) object;
 127                 if (!target.hasGraphType()) { return null; }
 128                 return new java.lang.Integer(target.getGraphType());
 129             }
 130             public void setValue( java.lang.Object object, java.lang.Object value)
 131                 throws IllegalStateException, IllegalArgumentException
 132             {
 133                 try {
 134                     Annotation target = (Annotation) object;
 135                     // if null, use delete method for optional primitives
 136                     if (value == null) {
 137                         target.deleteGraphType();
 138                         return;
 139                     }
 140                     target.setGraphType( ((java.lang.Integer) value).intValue());
 141                 } catch (java.lang.Exception ex) {
 142                     throw new IllegalStateException(ex.toString());
 143                 }
 144             }
 145             public java.lang.Object newInstance(java.lang.Object parent) {
 146                 return null;
 147             }
 148         };
 149         desc.setHandler(handler);
 150         desc.setMultivalued(false);
 151         addFieldDescriptor(desc);
 152
 153         //-- validation code for: _graphType
 154         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 155         { //-- local scope
 156             org.exolab.castor.xml.validators.IntValidator typeValidator;
 157             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 158             fieldValidator.setValidator(typeValidator);
 159             typeValidator.setMinInclusive(-2147483648);
 160             typeValidator.setMaxInclusive(2147483647);
 161         }
 162         desc.setValidator(fieldValidator);
 163         //-- _sequenceRef
 164         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_sequenceRef", "sequenceRef", org.exolab.castor.xml.NodeType.Attribute);
 165         desc.setImmutable(true);
 166         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 167             public java.lang.Object getValue( java.lang.Object object )
 168                 throws IllegalStateException
 169             {
 170                 Annotation target = (Annotation) object;
 171                 return target.getSequenceRef();
 172             }
 173             public void setValue( java.lang.Object object, java.lang.Object value)
 174                 throws IllegalStateException, IllegalArgumentException
 175             {
 176                 try {
 177                     Annotation target = (Annotation) object;
 178                     target.setSequenceRef( (java.lang.String) value);
 179                 } catch (java.lang.Exception ex) {
 180                     throw new IllegalStateException(ex.toString());
 181                 }
 182             }
 183             public java.lang.Object newInstance(java.lang.Object parent) {
 184                 return null;
 185             }
 186         };
 187         desc.setHandler(handler);
 188         desc.setMultivalued(false);
 189         addFieldDescriptor(desc);
 190
 191         //-- validation code for: _sequenceRef
 192         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 193         { //-- local scope
 194             org.exolab.castor.xml.validators.StringValidator typeValidator;
 195             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 196             fieldValidator.setValidator(typeValidator);
 197             typeValidator.setWhiteSpace("preserve");
 198         }
 199         desc.setValidator(fieldValidator);
 200         //-- _groupRef
 201         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_groupRef", "groupRef", org.exolab.castor.xml.NodeType.Attribute);
 202         desc.setImmutable(true);
 203         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 204             public java.lang.Object getValue( java.lang.Object object )
 205                 throws IllegalStateException
 206             {
 207                 Annotation target = (Annotation) object;
 208                 return target.getGroupRef();
 209             }
 210             public void setValue( java.lang.Object object, java.lang.Object value)
 211                 throws IllegalStateException, IllegalArgumentException
 212             {
 213                 try {
 214                     Annotation target = (Annotation) object;
 215                     target.setGroupRef( (java.lang.String) value);
 216                 } catch (java.lang.Exception ex) {
 217                     throw new IllegalStateException(ex.toString());
 218                 }
 219             }
 220             public java.lang.Object newInstance(java.lang.Object parent) {
 221                 return null;
 222             }
 223         };
 224         desc.setHandler(handler);
 225         desc.setMultivalued(false);
 226         addFieldDescriptor(desc);
 227
 228         //-- validation code for: _groupRef
 229         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 230         { //-- local scope
 231             org.exolab.castor.xml.validators.StringValidator typeValidator;
 232             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 233             fieldValidator.setValidator(typeValidator);
 234             typeValidator.setWhiteSpace("preserve");
 235         }
 236         desc.setValidator(fieldValidator);
 237         //-- _graphColour
 238         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphColour", "graphColour", org.exolab.castor.xml.NodeType.Attribute);
 239         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 240             public java.lang.Object getValue( java.lang.Object object )
 241                 throws IllegalStateException
 242             {
 243                 Annotation target = (Annotation) object;
 244                 if (!target.hasGraphColour()) { return null; }
 245                 return new java.lang.Integer(target.getGraphColour());
 246             }
 247             public void setValue( java.lang.Object object, java.lang.Object value)
 248                 throws IllegalStateException, IllegalArgumentException
 249             {
 250                 try {
 251                     Annotation target = (Annotation) object;
 252                     // if null, use delete method for optional primitives
 253                     if (value == null) {
 254                         target.deleteGraphColour();
 255                         return;
 256                     }
 257                     target.setGraphColour( ((java.lang.Integer) value).intValue());
 258                 } catch (java.lang.Exception ex) {
 259                     throw new IllegalStateException(ex.toString());
 260                 }
 261             }
 262             public java.lang.Object newInstance(java.lang.Object parent) {
 263                 return null;
 264             }
 265         };
 266         desc.setHandler(handler);
 267         desc.setMultivalued(false);
 268         addFieldDescriptor(desc);
 269
 270         //-- validation code for: _graphColour
 271         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 272         { //-- local scope
 273             org.exolab.castor.xml.validators.IntValidator typeValidator;
 274             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 275             fieldValidator.setValidator(typeValidator);
 276             typeValidator.setMinInclusive(-2147483648);
 277             typeValidator.setMaxInclusive(2147483647);
 278         }
 279         desc.setValidator(fieldValidator);
 280         //-- _graphGroup
 281         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphGroup", "graphGroup", org.exolab.castor.xml.NodeType.Attribute);
 282         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 283             public java.lang.Object getValue( java.lang.Object object )
 284                 throws IllegalStateException
 285             {
 286                 Annotation target = (Annotation) object;
 287                 if (!target.hasGraphGroup()) { return null; }
 288                 return new java.lang.Integer(target.getGraphGroup());
 289             }
 290             public void setValue( java.lang.Object object, java.lang.Object value)
 291                 throws IllegalStateException, IllegalArgumentException
 292             {
 293                 try {
 294                     Annotation target = (Annotation) object;
 295                     // if null, use delete method for optional primitives
 296                     if (value == null) {
 297                         target.deleteGraphGroup();
 298                         return;
 299                     }
 300                     target.setGraphGroup( ((java.lang.Integer) value).intValue());
 301                 } catch (java.lang.Exception ex) {
 302                     throw new IllegalStateException(ex.toString());
 303                 }
 304             }
 305             public java.lang.Object newInstance(java.lang.Object parent) {
 306                 return null;
 307             }
 308         };
 309         desc.setHandler(handler);
 310         desc.setMultivalued(false);
 311         addFieldDescriptor(desc);
 312
 313         //-- validation code for: _graphGroup
 314         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 315         { //-- local scope
 316             org.exolab.castor.xml.validators.IntValidator typeValidator;
 317             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 318             fieldValidator.setValidator(typeValidator);
 319             typeValidator.setMinInclusive(-2147483648);
 320             typeValidator.setMaxInclusive(2147483647);
 321         }
 322         desc.setValidator(fieldValidator);
 323         //-- _graphHeight
 324         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphHeight", "graphHeight", org.exolab.castor.xml.NodeType.Attribute);
 325         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 326             public java.lang.Object getValue( java.lang.Object object )
 327                 throws IllegalStateException
 328             {
 329                 Annotation target = (Annotation) object;
 330                 if (!target.hasGraphHeight()) { return null; }
 331                 return new java.lang.Integer(target.getGraphHeight());
 332             }
 333             public void setValue( java.lang.Object object, java.lang.Object value)
 334                 throws IllegalStateException, IllegalArgumentException
 335             {
 336                 try {
 337                     Annotation target = (Annotation) object;
 338                     // if null, use delete method for optional primitives
 339                     if (value == null) {
 340                         target.deleteGraphHeight();
 341                         return;
 342                     }
 343                     target.setGraphHeight( ((java.lang.Integer) value).intValue());
 344                 } catch (java.lang.Exception ex) {
 345                     throw new IllegalStateException(ex.toString());
 346                 }
 347             }
 348             public java.lang.Object newInstance(java.lang.Object parent) {
 349                 return null;
 350             }
 351         };
 352         desc.setHandler(handler);
 353         desc.setMultivalued(false);
 354         addFieldDescriptor(desc);
 355
 356         //-- validation code for: _graphHeight
 357         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 358         { //-- local scope
 359             org.exolab.castor.xml.validators.IntValidator typeValidator;
 360             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 361             fieldValidator.setValidator(typeValidator);
 362             typeValidator.setMinInclusive(-2147483648);
 363             typeValidator.setMaxInclusive(2147483647);
 364         }
 365         desc.setValidator(fieldValidator);
 366         //-- _id
 367         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
 368         desc.setImmutable(true);
 369         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 370             public java.lang.Object getValue( java.lang.Object object )
 371                 throws IllegalStateException
 372             {
 373                 Annotation target = (Annotation) object;
 374                 return target.getId();
 375             }
 376             public void setValue( java.lang.Object object, java.lang.Object value)
 377                 throws IllegalStateException, IllegalArgumentException
 378             {
 379                 try {
 380                     Annotation target = (Annotation) object;
 381                     target.setId( (java.lang.String) value);
 382                 } catch (java.lang.Exception ex) {
 383                     throw new IllegalStateException(ex.toString());
 384                 }
 385             }
 386             public java.lang.Object newInstance(java.lang.Object parent) {
 387                 return null;
 388             }
 389         };
 390         desc.setHandler(handler);
 391         desc.setMultivalued(false);
 392         addFieldDescriptor(desc);
 393
 394         //-- validation code for: _id
 395         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 396         { //-- local scope
 397             org.exolab.castor.xml.validators.StringValidator typeValidator;
 398             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 399             fieldValidator.setValidator(typeValidator);
 400             typeValidator.setWhiteSpace("preserve");
 401         }
 402         desc.setValidator(fieldValidator);
 403         //-- _scoreOnly
 404         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_scoreOnly", "scoreOnly", org.exolab.castor.xml.NodeType.Attribute);
 405         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 406             public java.lang.Object getValue( java.lang.Object object )
 407                 throws IllegalStateException
 408             {
 409                 Annotation target = (Annotation) object;
 410                 if (!target.hasScoreOnly()) { return null; }
 411                 return (target.getScoreOnly() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 412             }
 413             public void setValue( java.lang.Object object, java.lang.Object value)
 414                 throws IllegalStateException, IllegalArgumentException
 415             {
 416                 try {
 417                     Annotation target = (Annotation) object;
 418                     // if null, use delete method for optional primitives
 419                     if (value == null) {
 420                         target.deleteScoreOnly();
 421                         return;
 422                     }
 423                     target.setScoreOnly( ((java.lang.Boolean) value).booleanValue());
 424                 } catch (java.lang.Exception ex) {
 425                     throw new IllegalStateException(ex.toString());
 426                 }
 427             }
 428             public java.lang.Object newInstance(java.lang.Object parent) {
 429                 return null;
 430             }
 431         };
 432         desc.setHandler(handler);
 433         desc.setMultivalued(false);
 434         addFieldDescriptor(desc);
 435
 436         //-- validation code for: _scoreOnly
 437         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 438         { //-- local scope
 439             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 440             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 441             fieldValidator.setValidator(typeValidator);
 442         }
 443         desc.setValidator(fieldValidator);
 444         //-- _score
 445         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Double.TYPE, "_score", "score", org.exolab.castor.xml.NodeType.Attribute);
 446         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 447             public java.lang.Object getValue( java.lang.Object object )
 448                 throws IllegalStateException
 449             {
 450                 Annotation target = (Annotation) object;
 451                 if (!target.hasScore()) { return null; }
 452                 return new java.lang.Double(target.getScore());
 453             }
 454             public void setValue( java.lang.Object object, java.lang.Object value)
 455                 throws IllegalStateException, IllegalArgumentException
 456             {
 457                 try {
 458                     Annotation target = (Annotation) object;
 459                     // if null, use delete method for optional primitives
 460                     if (value == null) {
 461                         target.deleteScore();
 462                         return;
 463                     }
 464                     target.setScore( ((java.lang.Double) value).doubleValue());
 465                 } catch (java.lang.Exception ex) {
 466                     throw new IllegalStateException(ex.toString());
 467                 }
 468             }
 469             public java.lang.Object newInstance(java.lang.Object parent) {
 470                 return null;
 471             }
 472         };
 473         desc.setHandler(handler);
 474         desc.setMultivalued(false);
 475         addFieldDescriptor(desc);
 476
 477         //-- validation code for: _score
 478         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 479         { //-- local scope
 480             org.exolab.castor.xml.validators.DoubleValidator typeValidator;
 481             typeValidator = new org.exolab.castor.xml.validators.DoubleValidator();
 482             fieldValidator.setValidator(typeValidator);
 483             typeValidator.setMinInclusive(-1.7976931348623157E308);
 484             typeValidator.setMaxInclusive(1.7976931348623157E308);
 485         }
 486         desc.setValidator(fieldValidator);
 487         //-- _visible
 488         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_visible", "visible", org.exolab.castor.xml.NodeType.Attribute);
 489         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 490             public java.lang.Object getValue( java.lang.Object object )
 491                 throws IllegalStateException
 492             {
 493                 Annotation target = (Annotation) object;
 494                 if (!target.hasVisible()) { return null; }
 495                 return (target.getVisible() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 496             }
 497             public void setValue( java.lang.Object object, java.lang.Object value)
 498                 throws IllegalStateException, IllegalArgumentException
 499             {
 500                 try {
 501                     Annotation target = (Annotation) object;
 502                     // if null, use delete method for optional primitives
 503                     if (value == null) {
 504                         target.deleteVisible();
 505                         return;
 506                     }
 507                     target.setVisible( ((java.lang.Boolean) value).booleanValue());
 508                 } catch (java.lang.Exception ex) {
 509                     throw new IllegalStateException(ex.toString());
 510                 }
 511             }
 512             public java.lang.Object newInstance(java.lang.Object parent) {
 513                 return null;
 514             }
 515         };
 516         desc.setHandler(handler);
 517         desc.setMultivalued(false);
 518         addFieldDescriptor(desc);
 519
 520         //-- validation code for: _visible
 521         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 522         { //-- local scope
 523             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 524             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 525             fieldValidator.setValidator(typeValidator);
 526         }
 527         desc.setValidator(fieldValidator);
 528         //-- _centreColLabels
 529         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_centreColLabels", "centreColLabels", org.exolab.castor.xml.NodeType.Attribute);
 530         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 531             public java.lang.Object getValue( java.lang.Object object )
 532                 throws IllegalStateException
 533             {
 534                 Annotation target = (Annotation) object;
 535                 if (!target.hasCentreColLabels()) { return null; }
 536                 return (target.getCentreColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 537             }
 538             public void setValue( java.lang.Object object, java.lang.Object value)
 539                 throws IllegalStateException, IllegalArgumentException
 540             {
 541                 try {
 542                     Annotation target = (Annotation) object;
 543                     // if null, use delete method for optional primitives
 544                     if (value == null) {
 545                         target.deleteCentreColLabels();
 546                         return;
 547                     }
 548                     target.setCentreColLabels( ((java.lang.Boolean) value).booleanValue());
 549                 } catch (java.lang.Exception ex) {
 550                     throw new IllegalStateException(ex.toString());
 551                 }
 552             }
 553             public java.lang.Object newInstance(java.lang.Object parent) {
 554                 return null;
 555             }
 556         };
 557         desc.setHandler(handler);
 558         desc.setMultivalued(false);
 559         addFieldDescriptor(desc);
 560
 561         //-- validation code for: _centreColLabels
 562         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 563         { //-- local scope
 564             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 565             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 566             fieldValidator.setValidator(typeValidator);
 567         }
 568         desc.setValidator(fieldValidator);
 569         //-- _scaleColLabels
 570         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_scaleColLabels", "scaleColLabels", org.exolab.castor.xml.NodeType.Attribute);
 571         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 572             public java.lang.Object getValue( java.lang.Object object )
 573                 throws IllegalStateException
 574             {
 575                 Annotation target = (Annotation) object;
 576                 if (!target.hasScaleColLabels()) { return null; }
 577                 return (target.getScaleColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 578             }
 579             public void setValue( java.lang.Object object, java.lang.Object value)
 580                 throws IllegalStateException, IllegalArgumentException
 581             {
 582                 try {
 583                     Annotation target = (Annotation) object;
 584                     // if null, use delete method for optional primitives
 585                     if (value == null) {
 586                         target.deleteScaleColLabels();
 587                         return;
 588                     }
 589                     target.setScaleColLabels( ((java.lang.Boolean) value).booleanValue());
 590                 } catch (java.lang.Exception ex) {
 591                     throw new IllegalStateException(ex.toString());
 592                 }
 593             }
 594             public java.lang.Object newInstance(java.lang.Object parent) {
 595                 return null;
 596             }
 597         };
 598         desc.setHandler(handler);
 599         desc.setMultivalued(false);
 600         addFieldDescriptor(desc);
 601
 602         //-- validation code for: _scaleColLabels
 603         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 604         { //-- local scope
 605             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 606             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 607             fieldValidator.setValidator(typeValidator);
 608         }
 609         desc.setValidator(fieldValidator);
 610         //-- _showAllColLabels
 611         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showAllColLabels", "showAllColLabels", org.exolab.castor.xml.NodeType.Attribute);
 612         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 613             public java.lang.Object getValue( java.lang.Object object )
 614                 throws IllegalStateException
 615             {
 616                 Annotation target = (Annotation) object;
 617                 if (!target.hasShowAllColLabels()) { return null; }
 618                 return (target.getShowAllColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 619             }
 620             public void setValue( java.lang.Object object, java.lang.Object value)
 621                 throws IllegalStateException, IllegalArgumentException
 622             {
 623                 try {
 624                     Annotation target = (Annotation) object;
 625                     // if null, use delete method for optional primitives
 626                     if (value == null) {
 627                         target.deleteShowAllColLabels();
 628                         return;
 629                     }
 630                     target.setShowAllColLabels( ((java.lang.Boolean) value).booleanValue());
 631                 } catch (java.lang.Exception ex) {
 632                     throw new IllegalStateException(ex.toString());
 633                 }
 634             }
 635             public java.lang.Object newInstance(java.lang.Object parent) {
 636                 return null;
 637             }
 638         };
 639         desc.setHandler(handler);
 640         desc.setMultivalued(false);
 641         addFieldDescriptor(desc);
 642
 643         //-- validation code for: _showAllColLabels
 644         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 645         { //-- local scope
 646             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 647             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 648             fieldValidator.setValidator(typeValidator);
 649         }
 650         desc.setValidator(fieldValidator);
 651         //-- _autoCalculated
 652         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_autoCalculated", "autoCalculated", org.exolab.castor.xml.NodeType.Attribute);
 653         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 654             public java.lang.Object getValue( java.lang.Object object )
 655                 throws IllegalStateException
 656             {
 657                 Annotation target = (Annotation) object;
 658                 if (!target.hasAutoCalculated()) { return null; }
 659                 return (target.getAutoCalculated() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 660             }
 661             public void setValue( java.lang.Object object, java.lang.Object value)
 662                 throws IllegalStateException, IllegalArgumentException
 663             {
 664                 try {
 665                     Annotation target = (Annotation) object;
 666                     // if null, use delete method for optional primitives
 667                     if (value == null) {
 668                         target.deleteAutoCalculated();
 669                         return;
 670                     }
 671                     target.setAutoCalculated( ((java.lang.Boolean) value).booleanValue());
 672                 } catch (java.lang.Exception ex) {
 673                     throw new IllegalStateException(ex.toString());
 674                 }
 675             }
 676             public java.lang.Object newInstance(java.lang.Object parent) {
 677                 return null;
 678             }
 679         };
 680         desc.setHandler(handler);
 681         desc.setMultivalued(false);
 682         addFieldDescriptor(desc);
 683
 684         //-- validation code for: _autoCalculated
 685         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 686         { //-- local scope
 687             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 688             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 689             fieldValidator.setValidator(typeValidator);
 690         }
 691         desc.setValidator(fieldValidator);
 692         //-- _belowAlignment
 693         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_belowAlignment", "belowAlignment", org.exolab.castor.xml.NodeType.Attribute);
 694         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 695             public java.lang.Object getValue( java.lang.Object object )
 696                 throws IllegalStateException
 697             {
 698                 Annotation target = (Annotation) object;
 699                 if (!target.hasBelowAlignment()) { return null; }
 700                 return (target.getBelowAlignment() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 701             }
 702             public void setValue( java.lang.Object object, java.lang.Object value)
 703                 throws IllegalStateException, IllegalArgumentException
 704             {
 705                 try {
 706                     Annotation target = (Annotation) object;
 707                     // if null, use delete method for optional primitives
 708                     if (value == null) {
 709                         target.deleteBelowAlignment();
 710                         return;
 711                     }
 712                     target.setBelowAlignment( ((java.lang.Boolean) value).booleanValue());
 713                 } catch (java.lang.Exception ex) {
 714                     throw new IllegalStateException(ex.toString());
 715                 }
 716             }
 717             public java.lang.Object newInstance(java.lang.Object parent) {
 718                 return null;
 719             }
 720         };
 721         desc.setHandler(handler);
 722         desc.setMultivalued(false);
 723         addFieldDescriptor(desc);
 724
 725         //-- validation code for: _belowAlignment
 726         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 727         { //-- local scope
 728             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 729             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 730             fieldValidator.setValidator(typeValidator);
 731         }
 732         desc.setValidator(fieldValidator);
 733         //-- _calcId
 734         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_calcId", "calcId", org.exolab.castor.xml.NodeType.Attribute);
 735         desc.setImmutable(true);
 736         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 737             public java.lang.Object getValue( java.lang.Object object )
 738                 throws IllegalStateException
 739             {
 740                 Annotation target = (Annotation) object;
 741                 return target.getCalcId();
 742             }
 743             public void setValue( java.lang.Object object, java.lang.Object value)
 744                 throws IllegalStateException, IllegalArgumentException
 745             {
 746                 try {
 747                     Annotation target = (Annotation) object;
 748                     target.setCalcId( (java.lang.String) value);
 749                 } catch (java.lang.Exception ex) {
 750                     throw new IllegalStateException(ex.toString());
 751                 }
 752             }
 753             public java.lang.Object newInstance(java.lang.Object parent) {
 754                 return null;
 755             }
 756         };
 757         desc.setHandler(handler);
 758         desc.setMultivalued(false);
 759         addFieldDescriptor(desc);
 760
 761         //-- validation code for: _calcId
 762         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 763         { //-- local scope
 764             org.exolab.castor.xml.validators.StringValidator typeValidator;
 765             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 766             fieldValidator.setValidator(typeValidator);
 767             typeValidator.setWhiteSpace("preserve");
 768         }
 769         desc.setValidator(fieldValidator);
 770         //-- initialize element descriptors
 771
 772         //-- _annotationElementList
 773         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AnnotationElement.class, "_annotationElementList", "annotationElement", org.exolab.castor.xml.NodeType.Element);
 774         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 775             public java.lang.Object getValue( java.lang.Object object )
 776                 throws IllegalStateException
 777             {
 778                 Annotation target = (Annotation) object;
 779                 return target.getAnnotationElement();
 780             }
 781             public void setValue( java.lang.Object object, java.lang.Object value)
 782                 throws IllegalStateException, IllegalArgumentException
 783             {
 784                 try {
 785                     Annotation target = (Annotation) object;
 786                     target.addAnnotationElement( (jalview.schemabinding.version2.AnnotationElement) value);
 787                 } catch (java.lang.Exception ex) {
 788                     throw new IllegalStateException(ex.toString());
 789                 }
 790             }
 791             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 792                 try {
 793                     Annotation target = (Annotation) object;
 794                     target.removeAllAnnotationElement();
 795                 } catch (java.lang.Exception ex) {
 796                     throw new IllegalStateException(ex.toString());
 797                 }
 798             }
 799             public java.lang.Object newInstance(java.lang.Object parent) {
 800                 return new jalview.schemabinding.version2.AnnotationElement();
 801             }
 802         };
 803         desc.setHandler(handler);
 804         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 805         desc.setMultivalued(true);
 806         addFieldDescriptor(desc);
 807
 808         //-- validation code for: _annotationElementList
 809         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 810         fieldValidator.setMinOccurs(0);
 811         { //-- local scope
 812         }
 813         desc.setValidator(fieldValidator);
 814         //-- _label
 815         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_label", "label", org.exolab.castor.xml.NodeType.Element);
 816         desc.setImmutable(true);
 817         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 818             public java.lang.Object getValue( java.lang.Object object )
 819                 throws IllegalStateException
 820             {
 821                 Annotation target = (Annotation) object;
 822                 return target.getLabel();
 823             }
 824             public void setValue( java.lang.Object object, java.lang.Object value)
 825                 throws IllegalStateException, IllegalArgumentException
 826             {
 827                 try {
 828                     Annotation target = (Annotation) object;
 829                     target.setLabel( (java.lang.String) value);
 830                 } catch (java.lang.Exception ex) {
 831                     throw new IllegalStateException(ex.toString());
 832                 }
 833             }
 834             public java.lang.Object newInstance(java.lang.Object parent) {
 835                 return null;
 836             }
 837         };
 838         desc.setHandler(handler);
 839         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 840         desc.setRequired(true);
 841         desc.setMultivalued(false);
 842         addFieldDescriptor(desc);
 843
 844         //-- validation code for: _label
 845         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 846         fieldValidator.setMinOccurs(1);
 847         { //-- local scope
 848             org.exolab.castor.xml.validators.StringValidator typeValidator;
 849             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 850             fieldValidator.setValidator(typeValidator);
 851             typeValidator.setWhiteSpace("preserve");
 852         }
 853         desc.setValidator(fieldValidator);
 854         //-- _description
 855         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element);
 856         desc.setImmutable(true);
 857         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 858             public java.lang.Object getValue( java.lang.Object object )
 859                 throws IllegalStateException
 860             {
 861                 Annotation target = (Annotation) object;
 862                 return target.getDescription();
 863             }
 864             public void setValue( java.lang.Object object, java.lang.Object value)
 865                 throws IllegalStateException, IllegalArgumentException
 866             {
 867                 try {
 868                     Annotation target = (Annotation) object;
 869                     target.setDescription( (java.lang.String) value);
 870                 } catch (java.lang.Exception ex) {
 871                     throw new IllegalStateException(ex.toString());
 872                 }
 873             }
 874             public java.lang.Object newInstance(java.lang.Object parent) {
 875                 return null;
 876             }
 877         };
 878         desc.setHandler(handler);
 879         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 880         desc.setMultivalued(false);
 881         addFieldDescriptor(desc);
 882
 883         //-- validation code for: _description
 884         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 885         { //-- local scope
 886             org.exolab.castor.xml.validators.StringValidator typeValidator;
 887             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 888             fieldValidator.setValidator(typeValidator);
 889             typeValidator.setWhiteSpace("preserve");
 890         }
 891         desc.setValidator(fieldValidator);
 892         //-- _thresholdLine
 893         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.ThresholdLine.class, "_thresholdLine", "thresholdLine", org.exolab.castor.xml.NodeType.Element);
 894         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 895             public java.lang.Object getValue( java.lang.Object object )
 896                 throws IllegalStateException
 897             {
 898                 Annotation target = (Annotation) object;
 899                 return target.getThresholdLine();
 900             }
 901             public void setValue( java.lang.Object object, java.lang.Object value)
 902                 throws IllegalStateException, IllegalArgumentException
 903             {
 904                 try {
 905                     Annotation target = (Annotation) object;
 906                     target.setThresholdLine( (jalview.schemabinding.version2.ThresholdLine) value);
 907                 } catch (java.lang.Exception ex) {
 908                     throw new IllegalStateException(ex.toString());
 909                 }
 910             }
 911             public java.lang.Object newInstance(java.lang.Object parent) {
 912                 return new jalview.schemabinding.version2.ThresholdLine();
 913             }
 914         };
 915         desc.setHandler(handler);
 916         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 917         desc.setMultivalued(false);
 918         addFieldDescriptor(desc);
 919
 920         //-- validation code for: _thresholdLine
 921         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 922         { //-- local scope
 923         }
 924         desc.setValidator(fieldValidator);
 925         //-- _propertyList
 926         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Property.class, "_propertyList", "property", org.exolab.castor.xml.NodeType.Element);
 927         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 928             public java.lang.Object getValue( java.lang.Object object )
 929                 throws IllegalStateException
 930             {
 931                 Annotation target = (Annotation) object;
 932                 return target.getProperty();
 933             }
 934             public void setValue( java.lang.Object object, java.lang.Object value)
 935                 throws IllegalStateException, IllegalArgumentException
 936             {
 937                 try {
 938                     Annotation target = (Annotation) object;
 939                     target.addProperty( (jalview.schemabinding.version2.Property) value);
 940                 } catch (java.lang.Exception ex) {
 941                     throw new IllegalStateException(ex.toString());
 942                 }
 943             }
 944             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 945                 try {
 946                     Annotation target = (Annotation) object;
 947                     target.removeAllProperty();
 948                 } catch (java.lang.Exception ex) {
 949                     throw new IllegalStateException(ex.toString());
 950                 }
 951             }
 952             public java.lang.Object newInstance(java.lang.Object parent) {
 953                 return new jalview.schemabinding.version2.Property();
 954             }
 955         };
 956         desc.setHandler(handler);
 957         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 958         desc.setMultivalued(true);
 959         addFieldDescriptor(desc);
 960
 961         //-- validation code for: _propertyList
 962         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 963         fieldValidator.setMinOccurs(0);
 964         { //-- local scope
 965         }
 966         desc.setValidator(fieldValidator);
 967     }
 968
 969
 970       //-----------/
 971      //- Methods -/
 972     //-----------/
 973
 974     /**
 975      * Method getAccessMode.
 976      *
 977      * @return the access mode specified for this class.
 978      */
 979     public org.exolab.castor.mapping.AccessMode getAccessMode(
 980     ) {
 981         return null;
 982     }
 983
 984     /**
 985      * Method getIdentity.
 986      *
 987      * @return the identity field, null if this class has no
 988      * identity.
 989      */
 990     public org.exolab.castor.mapping.FieldDescriptor getIdentity(
 991     ) {
 992         return super.getIdentity();
 993     }
 994
 995     /**
 996      * Method getJavaClass.
 997      *
 998      * @return the Java class represented by this descriptor.
 999      */
1000     public java.lang.Class getJavaClass(
1001     ) {
1002         return jalview.schemabinding.version2.Annotation.class;
1003     }
1004
1005     /**
1006      * Method getNameSpacePrefix.
1007      *
1008      * @return the namespace prefix to use when marshaling as XML.
1009      */
1010     public java.lang.String getNameSpacePrefix(
1011     ) {
1012         return _nsPrefix;
1013     }
1014
1015     /**
1016      * Method getNameSpaceURI.
1017      *
1018      * @return the namespace URI used when marshaling and
1019      * unmarshaling as XML.
1020      */
1021     public java.lang.String getNameSpaceURI(
1022     ) {
1023         return _nsURI;
1024     }
1025
1026     /**
1027      * Method getValidator.
1028      *
1029      * @return a specific validator for the class described by this
1030      * ClassDescriptor.
1031      */
1032     public org.exolab.castor.xml.TypeValidator getValidator(
1033     ) {
1034         return this;
1035     }
1036
1037     /**
1038      * Method getXMLName.
1039      *
1040      * @return the XML Name for the Class being described.
1041      */
1042     public java.lang.String getXMLName(
1043     ) {
1044         return _xmlName;
1045     }
1046
1047     /**
1048      * Method isElementDefinition.
1049      *
1050      * @return true if XML schema definition of this Class is that
1051      * of a global
1052      * element or element with anonymous type definition.
1053      */
1054     public boolean isElementDefinition(
1055     ) {
1056         return _elementDefinition;
1057     }
1058
1059 }