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JAL-1894 update year/version in copyright
author
Jim Procter
<jprocter@issues.jalview.org>
Thu, 8 Oct 2015 11:21:30 +0000
(12:21 +0100)
committer
Jim Procter
<jprocter@issues.jalview.org>
Thu, 8 Oct 2015 11:21:30 +0000
(12:21 +0100)
901 files changed:
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diff --git
a/build.xml
b/build.xml
index
a0bfc85
..
d429d3c
100755
(executable)
--- a/
build.xml
+++ b/
build.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/AddingGroovySupport.html
b/doc/AddingGroovySupport.html
index
e71c53b
..
3639a97
100644
(file)
--- a/
doc/AddingGroovySupport.html
+++ b/
doc/AddingGroovySupport.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/AnnotationPostAnalysis.txt
b/doc/AnnotationPostAnalysis.txt
index
014cb73
..
3ac1b59
100644
(file)
--- a/
doc/AnnotationPostAnalysis.txt
+++ b/
doc/AnnotationPostAnalysis.txt
@@
-1,5
+1,5
@@
##
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/doc/JalviewRNASupport.html
b/doc/JalviewRNASupport.html
index
2e610d9
..
27fe4f7
100644
(file)
--- a/
doc/JalviewRNASupport.html
+++ b/
doc/JalviewRNASupport.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/UnitTesting.html
b/doc/UnitTesting.html
index
f92e0b1
..
6ac21a8
100644
(file)
--- a/
doc/UnitTesting.html
+++ b/
doc/UnitTesting.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/biojsmsa-templates.html
b/doc/biojsmsa-templates.html
index
50da663
..
22d8c50
100644
(file)
--- a/
doc/biojsmsa-templates.html
+++ b/
doc/biojsmsa-templates.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- *Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ *Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
*Copyright (C) 2015 The Jalview Authors
*
*This file is part of Jalview.
*Copyright (C) 2015 The Jalview Authors
*
*This file is part of Jalview.
diff --git
a/doc/building.html
b/doc/building.html
index
5b9158a
..
6cd1639
100755
(executable)
--- a/
doc/building.html
+++ b/
doc/building.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/developing.html
b/doc/developing.html
index
fd6ba1f
..
8cbb05f
100644
(file)
--- a/
doc/developing.html
+++ b/
doc/developing.html
@@
-1,6
+1,6
@@
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/i18n.html
b/doc/i18n.html
index
a985524
..
e74cef2
100644
(file)
--- a/
doc/i18n.html
+++ b/
doc/i18n.html
@@
-1,5
+1,5
@@
<!--
<!--
- *Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ *Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
*Copyright (C) 2015 The Jalview Authors
*
*This file is part of Jalview.
*Copyright (C) 2015 The Jalview Authors
*
*This file is part of Jalview.
diff --git
a/doc/index.html
b/doc/index.html
index
1f24939
..
fc2bd8e
100644
(file)
--- a/
doc/index.html
+++ b/
doc/index.html
@@
-1,6
+1,6
@@
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/newdmobj.html
b/doc/newdmobj.html
index
f10c9d3
..
b565176
100644
(file)
--- a/
doc/newdmobj.html
+++ b/
doc/newdmobj.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/appletParameters.html
b/examples/appletParameters.html
index
50546a3
..
90280a3
100644
(file)
--- a/
examples/appletParameters.html
+++ b/
examples/appletParameters.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/applets.html
b/examples/applets.html
index
852a446
..
193ed7c
100644
(file)
--- a/
examples/applets.html
+++ b/
examples/applets.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/ie6.css
b/examples/css/ie6.css
index
ceefae1
..
dd3e1a1
100644
(file)
--- a/
examples/css/ie6.css
+++ b/
examples/css/ie6.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/ie7.css
b/examples/css/ie7.css
index
0bf5fce
..
4199094
100644
(file)
--- a/
examples/css/ie7.css
+++ b/
examples/css/ie7.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/reset.css
b/examples/css/reset.css
index
4a6c995
..
717d481
100644
(file)
--- a/
examples/css/reset.css
+++ b/
examples/css/reset.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/style.css
b/examples/css/style.css
index
e9ea707
..
a65448b
100644
(file)
--- a/
examples/css/style.css
+++ b/
examples/css/style.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/embedded.html
b/examples/embedded.html
index
28292be
..
ce1dc32
100644
(file)
--- a/
examples/embedded.html
+++ b/
examples/embedded.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/exampleFeatures.txt
b/examples/exampleFeatures.txt
index
f0b13ab
..
12b3bd8
100755
(executable)
--- a/
examples/exampleFeatures.txt
+++ b/
examples/exampleFeatures.txt
@@
-1,5
+1,5
@@
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/examples/formComplete.html
b/examples/formComplete.html
index
52b13ff
..
1fd4ad9
100644
(file)
--- a/
examples/formComplete.html
+++ b/
examples/formComplete.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/JvLoadTestHarness.groovy
b/examples/groovy/JvLoadTestHarness.groovy
index
5dab623
..
68a6d82
100644
(file)
--- a/
examples/groovy/JvLoadTestHarness.groovy
+++ b/
examples/groovy/JvLoadTestHarness.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/JvLoadTester.groovy
b/examples/groovy/JvLoadTester.groovy
index
d7febba
..
c72deea
100644
(file)
--- a/
examples/groovy/JvLoadTester.groovy
+++ b/
examples/groovy/JvLoadTester.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/alignLoadedFile.groovy
b/examples/groovy/alignLoadedFile.groovy
index
5beb40e
..
2884679
100644
(file)
--- a/
examples/groovy/alignLoadedFile.groovy
+++ b/
examples/groovy/alignLoadedFile.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/annotationForSelectedSequence.groovy
b/examples/groovy/annotationForSelectedSequence.groovy
index
5022a37
..
43ac8a5
100644
(file)
--- a/
examples/groovy/annotationForSelectedSequence.groovy
+++ b/
examples/groovy/annotationForSelectedSequence.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/annotationsascsv.groovy
b/examples/groovy/annotationsascsv.groovy
index
b1c95d2
..
414b0d6
100644
(file)
--- a/
examples/groovy/annotationsascsv.groovy
+++ b/
examples/groovy/annotationsascsv.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/closures.groovy
b/examples/groovy/closures.groovy
index
6533b22
..
5b19939
100644
(file)
--- a/
examples/groovy/closures.groovy
+++ b/
examples/groovy/closures.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/iterateOverAlignments.groovy
b/examples/groovy/iterateOverAlignments.groovy
index
8f8a507
..
22d935d
100644
(file)
--- a/
examples/groovy/iterateOverAlignments.groovy
+++ b/
examples/groovy/iterateOverAlignments.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/parseproperties.groovy
b/examples/groovy/parseproperties.groovy
index
72dad07
..
c7842dc
100644
(file)
--- a/
examples/groovy/parseproperties.groovy
+++ b/
examples/groovy/parseproperties.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/printtitle.groovy
b/examples/groovy/printtitle.groovy
index
348b40f
..
eb56410
100644
(file)
--- a/
examples/groovy/printtitle.groovy
+++ b/
examples/groovy/printtitle.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/removeFeaturesByGroup.groovy
b/examples/groovy/removeFeaturesByGroup.groovy
index
f9737e7
..
10466a3
100644
(file)
--- a/
examples/groovy/removeFeaturesByGroup.groovy
+++ b/
examples/groovy/removeFeaturesByGroup.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/selectColumnsByFeatureAndGroup.groovy
b/examples/groovy/selectColumnsByFeatureAndGroup.groovy
index
8597cc1
..
3323d67
100644
(file)
--- a/
examples/groovy/selectColumnsByFeatureAndGroup.groovy
+++ b/
examples/groovy/selectColumnsByFeatureAndGroup.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/sitesForSelectedColumns.groovy
b/examples/groovy/sitesForSelectedColumns.groovy
index
c4b3355
..
3e72761
100644
(file)
--- a/
examples/groovy/sitesForSelectedColumns.groovy
+++ b/
examples/groovy/sitesForSelectedColumns.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/groovy/stripUniprotPrefixes.groovy
b/examples/groovy/stripUniprotPrefixes.groovy
index
b190e4d
..
e324e18
100644
(file)
--- a/
examples/groovy/stripUniprotPrefixes.groovy
+++ b/
examples/groovy/stripUniprotPrefixes.groovy
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/includes/footer_jv.html
b/examples/includes/footer_jv.html
index
6eca90c
..
584ef35
100644
(file)
--- a/
examples/includes/footer_jv.html
+++ b/
examples/includes/footer_jv.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/includes/header_jv.html
b/examples/includes/header_jv.html
index
6646273
..
7b8b910
100644
(file)
--- a/
examples/includes/header_jv.html
+++ b/
examples/includes/header_jv.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/includes/nav_jv.html
b/examples/includes/nav_jv.html
index
46321d4
..
cc9fecb
100644
(file)
--- a/
examples/includes/nav_jv.html
+++ b/
examples/includes/nav_jv.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/jalviewLiteJs.html
b/examples/jalviewLiteJs.html
index
164cb73
..
4206ab9
100644
(file)
--- a/
examples/jalviewLiteJs.html
+++ b/
examples/jalviewLiteJs.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/javascript/jalview.js
b/examples/javascript/jalview.js
index
407e34a
..
d21d42d
100644
(file)
--- a/
examples/javascript/jalview.js
+++ b/
examples/javascript/jalview.js
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/javascript/jvcontroller.js
b/examples/javascript/jvcontroller.js
index
9b58306
..
6cb0f1e
100644
(file)
--- a/
examples/javascript/jvcontroller.js
+++ b/
examples/javascript/jvcontroller.js
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/javascriptLaunch.html
b/examples/javascriptLaunch.html
index
1def1a8
..
fb43c01
100644
(file)
--- a/
examples/javascriptLaunch.html
+++ b/
examples/javascriptLaunch.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/linkedapplets_ng.html
b/examples/linkedapplets_ng.html
index
adcea4a
..
b4db87b
100644
(file)
--- a/
examples/linkedapplets_ng.html
+++ b/
examples/linkedapplets_ng.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/help.hs
b/help/help.hs
index
6115dea
..
434efb4
100755
(executable)
--- a/
help/help.hs
+++ b/
help/help.hs
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/help.jhm
b/help/help.jhm
index
357844b
..
151f5e3
100755
(executable)
--- a/
help/help.jhm
+++ b/
help/help.jhm
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/helpTOC.xml
b/help/helpTOC.xml
index
73147d2
..
6f3b02a
100755
(executable)
--- a/
help/helpTOC.xml
+++ b/
help/helpTOC.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/consensus.html
b/help/html/calculations/consensus.html
index
0476f05
..
b418153
100644
(file)
--- a/
help/html/calculations/consensus.html
+++ b/
help/html/calculations/consensus.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/conservation.html
b/help/html/calculations/conservation.html
index
da48455
..
6bec7a4
100755
(executable)
--- a/
help/html/calculations/conservation.html
+++ b/
help/html/calculations/conservation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/pairwise.html
b/help/html/calculations/pairwise.html
index
4b9cf68
..
5ae111e
100755
(executable)
--- a/
help/html/calculations/pairwise.html
+++ b/
help/html/calculations/pairwise.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/pca.html
b/help/html/calculations/pca.html
index
d1841a1
..
e8df667
100755
(executable)
--- a/
help/html/calculations/pca.html
+++ b/
help/html/calculations/pca.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/quality.html
b/help/html/calculations/quality.html
index
ff084cf
..
91ff5f8
100755
(executable)
--- a/
help/html/calculations/quality.html
+++ b/
help/html/calculations/quality.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/recoverInputdata.html
b/help/html/calculations/recoverInputdata.html
index
cd6a808
..
3ca09c4
100644
(file)
--- a/
help/html/calculations/recoverInputdata.html
+++ b/
help/html/calculations/recoverInputdata.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/redundancy.html
b/help/html/calculations/redundancy.html
index
2946ab7
..
c8d4ef6
100755
(executable)
--- a/
help/html/calculations/redundancy.html
+++ b/
help/html/calculations/redundancy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/referenceseq.html
b/help/html/calculations/referenceseq.html
index
d0fbb20
..
19d3be2
100644
(file)
--- a/
help/html/calculations/referenceseq.html
+++ b/
help/html/calculations/referenceseq.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/scorematrices.html
b/help/html/calculations/scorematrices.html
index
8a1181d
..
231157a
100644
(file)
--- a/
help/html/calculations/scorematrices.html
+++ b/
help/html/calculations/scorematrices.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/sorting.html
b/help/html/calculations/sorting.html
index
1478d59
..
b04fa5d
100755
(executable)
--- a/
help/html/calculations/sorting.html
+++ b/
help/html/calculations/sorting.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/structureconsensus.html
b/help/html/calculations/structureconsensus.html
index
7b0ce98
..
e32dd36
100755
(executable)
--- a/
help/html/calculations/structureconsensus.html
+++ b/
help/html/calculations/structureconsensus.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/tree.html
b/help/html/calculations/tree.html
index
f95476f
..
2512378
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(executable)
--- a/
help/html/calculations/tree.html
+++ b/
help/html/calculations/tree.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/treeviewer.html
b/help/html/calculations/treeviewer.html
index
cbe4f87
..
2e3f0a3
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(executable)
--- a/
help/html/calculations/treeviewer.html
+++ b/
help/html/calculations/treeviewer.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/abovePID.html
b/help/html/colourSchemes/abovePID.html
index
80d45f4
..
570640c
100755
(executable)
--- a/
help/html/colourSchemes/abovePID.html
+++ b/
help/html/colourSchemes/abovePID.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/annotationColouring.html
b/help/html/colourSchemes/annotationColouring.html
index
55e3a85
..
4e0a137
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(executable)
--- a/
help/html/colourSchemes/annotationColouring.html
+++ b/
help/html/colourSchemes/annotationColouring.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/blosum.html
b/help/html/colourSchemes/blosum.html
index
e327d56
..
ae59f99
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(executable)
--- a/
help/html/colourSchemes/blosum.html
+++ b/
help/html/colourSchemes/blosum.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/buried.html
b/help/html/colourSchemes/buried.html
index
d6d0eec
..
62fcc6e
100755
(executable)
--- a/
help/html/colourSchemes/buried.html
+++ b/
help/html/colourSchemes/buried.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/clustal.html
b/help/html/colourSchemes/clustal.html
index
0c39a15
..
685ea99
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(executable)
--- a/
help/html/colourSchemes/clustal.html
+++ b/
help/html/colourSchemes/clustal.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/conservation.html
b/help/html/colourSchemes/conservation.html
index
ccd3615
..
41484a7
100755
(executable)
--- a/
help/html/colourSchemes/conservation.html
+++ b/
help/html/colourSchemes/conservation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/helix.html
b/help/html/colourSchemes/helix.html
index
f570ce2
..
cd09f21
100755
(executable)
--- a/
help/html/colourSchemes/helix.html
+++ b/
help/html/colourSchemes/helix.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/hydrophobic.html
b/help/html/colourSchemes/hydrophobic.html
index
dda803d
..
4ff8cf3
100755
(executable)
--- a/
help/html/colourSchemes/hydrophobic.html
+++ b/
help/html/colourSchemes/hydrophobic.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/index.html
b/help/html/colourSchemes/index.html
index
01319b7
..
07816ec
100755
(executable)
--- a/
help/html/colourSchemes/index.html
+++ b/
help/html/colourSchemes/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/nucleotide.html
b/help/html/colourSchemes/nucleotide.html
index
88a894b
..
bf00142
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(executable)
--- a/
help/html/colourSchemes/nucleotide.html
+++ b/
help/html/colourSchemes/nucleotide.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/pid.html
b/help/html/colourSchemes/pid.html
index
20e8330
..
f6e5609
100755
(executable)
--- a/
help/html/colourSchemes/pid.html
+++ b/
help/html/colourSchemes/pid.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/purinepyrimidine.html
b/help/html/colourSchemes/purinepyrimidine.html
index
e24b082
..
ea34e82
100644
(file)
--- a/
help/html/colourSchemes/purinepyrimidine.html
+++ b/
help/html/colourSchemes/purinepyrimidine.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/rnahelicesColouring.html
b/help/html/colourSchemes/rnahelicesColouring.html
index
a49a9e5
..
6446bee
100644
(file)
--- a/
help/html/colourSchemes/rnahelicesColouring.html
+++ b/
help/html/colourSchemes/rnahelicesColouring.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/strand.html
b/help/html/colourSchemes/strand.html
index
93c6fed
..
6b83a81
100755
(executable)
--- a/
help/html/colourSchemes/strand.html
+++ b/
help/html/colourSchemes/strand.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/taylor.html
b/help/html/colourSchemes/taylor.html
index
cf19eb8
..
0b163c9
100755
(executable)
--- a/
help/html/colourSchemes/taylor.html
+++ b/
help/html/colourSchemes/taylor.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/textcolour.html
b/help/html/colourSchemes/textcolour.html
index
979e950
..
f908a5a
100644
(file)
--- a/
help/html/colourSchemes/textcolour.html
+++ b/
help/html/colourSchemes/textcolour.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/turn.html
b/help/html/colourSchemes/turn.html
index
fa83414
..
469551c
100755
(executable)
--- a/
help/html/colourSchemes/turn.html
+++ b/
help/html/colourSchemes/turn.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/user.html
b/help/html/colourSchemes/user.html
index
100e8ee
..
8f98165
100755
(executable)
--- a/
help/html/colourSchemes/user.html
+++ b/
help/html/colourSchemes/user.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/zappo.html
b/help/html/colourSchemes/zappo.html
index
eca1df9
..
e5d9222
100755
(executable)
--- a/
help/html/colourSchemes/zappo.html
+++ b/
help/html/colourSchemes/zappo.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/editing/index.html
b/help/html/editing/index.html
index
2dfbde6
..
58bf4e1
100755
(executable)
--- a/
help/html/editing/index.html
+++ b/
help/html/editing/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/annotation.html
b/help/html/features/annotation.html
index
078dc8b
..
4c3e16b
100755
(executable)
--- a/
help/html/features/annotation.html
+++ b/
help/html/features/annotation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/annotationsFormat.html
b/help/html/features/annotationsFormat.html
index
afd3586
..
c95d3e3
100755
(executable)
--- a/
help/html/features/annotationsFormat.html
+++ b/
help/html/features/annotationsFormat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/bioJsonFormat.html
b/help/html/features/bioJsonFormat.html
index
f1a5b4e
..
a52198f
100644
(file)
--- a/
help/html/features/bioJsonFormat.html
+++ b/
help/html/features/bioJsonFormat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/biojsmsa.html
b/help/html/features/biojsmsa.html
index
89180d5
..
ac99a0a
100644
(file)
--- a/
help/html/features/biojsmsa.html
+++ b/
help/html/features/biojsmsa.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- *Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ *Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
*Copyright (C) 2015 The Jalview Authors
*
*This file is part of Jalview.
*Copyright (C) 2015 The Jalview Authors
*
*This file is part of Jalview.
diff --git
a/help/html/features/chimera.html
b/help/html/features/chimera.html
index
e80d0e2
..
485466a
100644
(file)
--- a/
help/html/features/chimera.html
+++ b/
help/html/features/chimera.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/clarguments.html
b/help/html/features/clarguments.html
index
b514e65
..
a017414
100644
(file)
--- a/
help/html/features/clarguments.html
+++ b/
help/html/features/clarguments.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/codingfeatures.html
b/help/html/features/codingfeatures.html
index
e4b8950
..
f314d2a
100644
(file)
--- a/
help/html/features/codingfeatures.html
+++ b/
help/html/features/codingfeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/columnFilterByAnnotation.html
b/help/html/features/columnFilterByAnnotation.html
index
8840b18
..
7e6b17a
100644
(file)
--- a/
help/html/features/columnFilterByAnnotation.html
+++ b/
help/html/features/columnFilterByAnnotation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/commandline.html
b/help/html/features/commandline.html
index
7b58a34
..
d9a6e10
100644
(file)
--- a/
help/html/features/commandline.html
+++ b/
help/html/features/commandline.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/creatinFeatures.html
b/help/html/features/creatinFeatures.html
index
643c8a3
..
8740a10
100644
(file)
--- a/
help/html/features/creatinFeatures.html
+++ b/
help/html/features/creatinFeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/cursorMode.html
b/help/html/features/cursorMode.html
index
d257f1b
..
21844cf
100755
(executable)
--- a/
help/html/features/cursorMode.html
+++ b/
help/html/features/cursorMode.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/dasfeatures.html
b/help/html/features/dasfeatures.html
index
5b88ca9
..
46707a3
100644
(file)
--- a/
help/html/features/dasfeatures.html
+++ b/
help/html/features/dasfeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/dassettings.html
b/help/html/features/dassettings.html
index
1a0c863
..
9e08331
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(file)
--- a/
help/html/features/dassettings.html
+++ b/
help/html/features/dassettings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/editingFeatures.html
b/help/html/features/editingFeatures.html
index
5fc36c6
..
8bef6f1
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(file)
--- a/
help/html/features/editingFeatures.html
+++ b/
help/html/features/editingFeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/featuresFormat.html
b/help/html/features/featuresFormat.html
index
9d354dc
..
257d42c
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(executable)
--- a/
help/html/features/featuresFormat.html
+++ b/
help/html/features/featuresFormat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/featureschemes.html
b/help/html/features/featureschemes.html
index
fa91c59
..
d01ce2a
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(file)
--- a/
help/html/features/featureschemes.html
+++ b/
help/html/features/featureschemes.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/featuresettings.html
b/help/html/features/featuresettings.html
index
54c6dcb
..
e776bf8
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(executable)
--- a/
help/html/features/featuresettings.html
+++ b/
help/html/features/featuresettings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/groovy.html
b/help/html/features/groovy.html
index
afb9098
..
6413c00
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(file)
--- a/
help/html/features/groovy.html
+++ b/
help/html/features/groovy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/hiddenRegions.html
b/help/html/features/hiddenRegions.html
index
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..
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(file)
--- a/
help/html/features/hiddenRegions.html
+++ b/
help/html/features/hiddenRegions.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/jalarchive.html
b/help/html/features/jalarchive.html
index
8e81024
..
7415f3f
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(executable)
--- a/
help/html/features/jalarchive.html
+++ b/
help/html/features/jalarchive.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/jmol.html
b/help/html/features/jmol.html
index
b9e7e84
..
8a5d938
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(file)
--- a/
help/html/features/jmol.html
+++ b/
help/html/features/jmol.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/multipleViews.html
b/help/html/features/multipleViews.html
index
65aeb80
..
d4cad5f
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(file)
--- a/
help/html/features/multipleViews.html
+++ b/
help/html/features/multipleViews.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/newkeystrokes.html
b/help/html/features/newkeystrokes.html
index
78d18a6
..
96c53e6
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(file)
--- a/
help/html/features/newkeystrokes.html
+++ b/
help/html/features/newkeystrokes.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/overview.html
b/help/html/features/overview.html
index
a002c92
..
cbe9d99
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(executable)
--- a/
help/html/features/overview.html
+++ b/
help/html/features/overview.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/pdbsequencefetcher.html
b/help/html/features/pdbsequencefetcher.html
index
c26575e
..
968d40c
100644
(file)
--- a/
help/html/features/pdbsequencefetcher.html
+++ b/
help/html/features/pdbsequencefetcher.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/pdbviewer.html
b/help/html/features/pdbviewer.html
index
0d7a51b
..
1737abe
100755
(executable)
--- a/
help/html/features/pdbviewer.html
+++ b/
help/html/features/pdbviewer.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/preferences.html
b/help/html/features/preferences.html
index
235ce3f
..
95a43f7
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(executable)
--- a/
help/html/features/preferences.html
+++ b/
help/html/features/preferences.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/search.html
b/help/html/features/search.html
index
2c1ed0f
..
174a2be
100755
(executable)
--- a/
help/html/features/search.html
+++ b/
help/html/features/search.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqfeatures.html
b/help/html/features/seqfeatures.html
index
99b008e
..
b5e644f
100755
(executable)
--- a/
help/html/features/seqfeatures.html
+++ b/
help/html/features/seqfeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqfetch.html
b/help/html/features/seqfetch.html
index
8870550
..
519430c
100755
(executable)
--- a/
help/html/features/seqfetch.html
+++ b/
help/html/features/seqfetch.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqmappings.html
b/help/html/features/seqmappings.html
index
1b078d0
..
0f723c2
100644
(file)
--- a/
help/html/features/seqmappings.html
+++ b/
help/html/features/seqmappings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/splitView.html
b/help/html/features/splitView.html
index
f91b8e5
..
be1cea9
100644
(file)
--- a/
help/html/features/splitView.html
+++ b/
help/html/features/splitView.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/structurechooser.html
b/help/html/features/structurechooser.html
index
30825c5
..
a3fffa8
100644
(file)
--- a/
help/html/features/structurechooser.html
+++ b/
help/html/features/structurechooser.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/varna.html
b/help/html/features/varna.html
index
0ce3139
..
ad3ed08
100644
(file)
--- a/
help/html/features/varna.html
+++ b/
help/html/features/varna.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/viewingpdbs.html
b/help/html/features/viewingpdbs.html
index
f993204
..
45cf447
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(executable)
--- a/
help/html/features/viewingpdbs.html
+++ b/
help/html/features/viewingpdbs.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/wrap.html
b/help/html/features/wrap.html
index
8f562eb
..
5d9a3cc
100755
(executable)
--- a/
help/html/features/wrap.html
+++ b/
help/html/features/wrap.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/xsspannotation.html
b/help/html/features/xsspannotation.html
index
fcc2b21
..
52e78c8
100644
(file)
--- a/
help/html/features/xsspannotation.html
+++ b/
help/html/features/xsspannotation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/index.html
b/help/html/index.html
index
c1a4b60
..
2d499e5
100755
(executable)
--- a/
help/html/index.html
+++ b/
help/html/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/export.html
b/help/html/io/export.html
index
239fa29
..
11a15c8
100755
(executable)
--- a/
help/html/io/export.html
+++ b/
help/html/io/export.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/exportseqreport.html
b/help/html/io/exportseqreport.html
index
8e99d0e
..
0a58e84
100644
(file)
--- a/
help/html/io/exportseqreport.html
+++ b/
help/html/io/exportseqreport.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/fileformats.html
b/help/html/io/fileformats.html
index
8f88c26
..
bdef417
100755
(executable)
--- a/
help/html/io/fileformats.html
+++ b/
help/html/io/fileformats.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/index.html
b/help/html/io/index.html
index
57f0416
..
a6e52a9
100755
(executable)
--- a/
help/html/io/index.html
+++ b/
help/html/io/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/modellerpir.html
b/help/html/io/modellerpir.html
index
0290721
..
afc87da
100755
(executable)
--- a/
help/html/io/modellerpir.html
+++ b/
help/html/io/modellerpir.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/tcoffeescores.html
b/help/html/io/tcoffeescores.html
index
5bc6f7d
..
5250887
100644
(file)
--- a/
help/html/io/tcoffeescores.html
+++ b/
help/html/io/tcoffeescores.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/keys.html
b/help/html/keys.html
index
6a88c5c
..
1ec4dfc
100755
(executable)
--- a/
help/html/keys.html
+++ b/
help/html/keys.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/memory.html
b/help/html/memory.html
index
edc277c
..
58c7459
100755
(executable)
--- a/
help/html/memory.html
+++ b/
help/html/memory.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alignmentMenu.html
b/help/html/menus/alignmentMenu.html
index
5f60ba5
..
406d56e
100755
(executable)
--- a/
help/html/menus/alignmentMenu.html
+++ b/
help/html/menus/alignmentMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwannotation.html
b/help/html/menus/alwannotation.html
index
843486d
..
a736049
100755
(executable)
--- a/
help/html/menus/alwannotation.html
+++ b/
help/html/menus/alwannotation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwannotationpanel.html
b/help/html/menus/alwannotationpanel.html
index
8d49744
..
ec8e385
100755
(executable)
--- a/
help/html/menus/alwannotationpanel.html
+++ b/
help/html/menus/alwannotationpanel.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwcalculate.html
b/help/html/menus/alwcalculate.html
index
d39afa0
..
6d854b8
100755
(executable)
--- a/
help/html/menus/alwcalculate.html
+++ b/
help/html/menus/alwcalculate.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwcolour.html
b/help/html/menus/alwcolour.html
index
72df8f7
..
afbb0b1
100755
(executable)
--- a/
help/html/menus/alwcolour.html
+++ b/
help/html/menus/alwcolour.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwedit.html
b/help/html/menus/alwedit.html
index
1ead68a
..
334706a
100755
(executable)
--- a/
help/html/menus/alwedit.html
+++ b/
help/html/menus/alwedit.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwfile.html
b/help/html/menus/alwfile.html
index
3e4cf68
..
9d54abb
100755
(executable)
--- a/
help/html/menus/alwfile.html
+++ b/
help/html/menus/alwfile.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwformat.html
b/help/html/menus/alwformat.html
index
2c6b4f7
..
7159e52
100644
(file)
--- a/
help/html/menus/alwformat.html
+++ b/
help/html/menus/alwformat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwselect.html
b/help/html/menus/alwselect.html
index
013ae4b
..
82e76ff
100644
(file)
--- a/
help/html/menus/alwselect.html
+++ b/
help/html/menus/alwselect.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwview.html
b/help/html/menus/alwview.html
index
d18b6f0
..
fc21bbd
100755
(executable)
--- a/
help/html/menus/alwview.html
+++ b/
help/html/menus/alwview.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/desktopMenu.html
b/help/html/menus/desktopMenu.html
index
9c41b7e
..
8a2fce7
100755
(executable)
--- a/
help/html/menus/desktopMenu.html
+++ b/
help/html/menus/desktopMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/index.html
b/help/html/menus/index.html
index
4f40e96
..
8807036
100755
(executable)
--- a/
help/html/menus/index.html
+++ b/
help/html/menus/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/popupMenu.html
b/help/html/menus/popupMenu.html
index
20169c4
..
799f3f7
100755
(executable)
--- a/
help/html/menus/popupMenu.html
+++ b/
help/html/menus/popupMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/wsmenu.html
b/help/html/menus/wsmenu.html
index
753f4f6
..
312fece
100755
(executable)
--- a/
help/html/menus/wsmenu.html
+++ b/
help/html/menus/wsmenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/misc/aaproperties.html
b/help/html/misc/aaproperties.html
index
88b85b9
..
dd5e232
100755
(executable)
--- a/
help/html/misc/aaproperties.html
+++ b/
help/html/misc/aaproperties.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/misc/aminoAcids.html
b/help/html/misc/aminoAcids.html
index
c692586
..
036cf92
100755
(executable)
--- a/
help/html/misc/aminoAcids.html
+++ b/
help/html/misc/aminoAcids.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/misc/geneticCode.html
b/help/html/misc/geneticCode.html
index
fdcb06e
..
dc34e00
100755
(executable)
--- a/
help/html/misc/geneticCode.html
+++ b/
help/html/misc/geneticCode.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/na/index.html
b/help/html/na/index.html
index
956307b
..
01159f8
100644
(file)
--- a/
help/html/na/index.html
+++ b/
help/html/na/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/privacy.html
b/help/html/privacy.html
index
b6bd728
..
e2be895
100644
(file)
--- a/
help/html/privacy.html
+++ b/
help/html/privacy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/releases.html
b/help/html/releases.html
index
46a9695
..
e248c14
100755
(executable)
--- a/
help/html/releases.html
+++ b/
help/html/releases.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/vamsas/index.html
b/help/html/vamsas/index.html
index
87b6102
..
d7755c6
100644
(file)
--- a/
help/html/vamsas/index.html
+++ b/
help/html/vamsas/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/AACon.html
b/help/html/webServices/AACon.html
index
07473f2
..
07bba54
100644
(file)
--- a/
help/html/webServices/AACon.html
+++ b/
help/html/webServices/AACon.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/JABAWS.html
b/help/html/webServices/JABAWS.html
index
f12b081
..
b30346d
100644
(file)
--- a/
help/html/webServices/JABAWS.html
+++ b/
help/html/webServices/JABAWS.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/RNAalifold.html
b/help/html/webServices/RNAalifold.html
index
60e27cf
..
7678136
100644
(file)
--- a/
help/html/webServices/RNAalifold.html
+++ b/
help/html/webServices/RNAalifold.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/dbreffetcher.html
b/help/html/webServices/dbreffetcher.html
index
fdf48a1
..
5b05391
100644
(file)
--- a/
help/html/webServices/dbreffetcher.html
+++ b/
help/html/webServices/dbreffetcher.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/index.html
b/help/html/webServices/index.html
index
fd2584a
..
95a1d47
100755
(executable)
--- a/
help/html/webServices/index.html
+++ b/
help/html/webServices/index.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/jnet.html
b/help/html/webServices/jnet.html
index
a2fdeb1
..
6bd3f11
100755
(executable)
--- a/
help/html/webServices/jnet.html
+++ b/
help/html/webServices/jnet.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/msaclient.html
b/help/html/webServices/msaclient.html
index
24851d9
..
b62a484
100644
(file)
--- a/
help/html/webServices/msaclient.html
+++ b/
help/html/webServices/msaclient.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/newsreader.html
b/help/html/webServices/newsreader.html
index
44bddea
..
128ac86
100644
(file)
--- a/
help/html/webServices/newsreader.html
+++ b/
help/html/webServices/newsreader.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/proteinDisorder.html
b/help/html/webServices/proteinDisorder.html
index
8841b5e
..
be1045b
100644
(file)
--- a/
help/html/webServices/proteinDisorder.html
+++ b/
help/html/webServices/proteinDisorder.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/shmr.html
b/help/html/webServices/shmr.html
index
a19d78e
..
714f77b
100755
(executable)
--- a/
help/html/webServices/shmr.html
+++ b/
help/html/webServices/shmr.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/urllinks.html
b/help/html/webServices/urllinks.html
index
3dac542
..
cc35b0b
100644
(file)
--- a/
help/html/webServices/urllinks.html
+++ b/
help/html/webServices/urllinks.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/webServicesParams.html
b/help/html/webServices/webServicesParams.html
index
63d5468
..
1c99a98
100644
(file)
--- a/
help/html/webServices/webServicesParams.html
+++ b/
help/html/webServices/webServicesParams.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/webServicesPrefs.html
b/help/html/webServices/webServicesPrefs.html
index
ac25ed6
..
3a39871
100644
(file)
--- a/
help/html/webServices/webServicesPrefs.html
+++ b/
help/html/webServices/webServicesPrefs.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/whatsNew.html
b/help/html/whatsNew.html
index
35af554
..
17ac275
100755
(executable)
--- a/
help/html/whatsNew.html
+++ b/
help/html/whatsNew.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/jalview-jalopy.xml
b/jalview-jalopy.xml
index
c1329cb
..
1ace883
100755
(executable)
--- a/
jalview-jalopy.xml
+++ b/
jalview-jalopy.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/nbbuild.xml
b/nbbuild.xml
index
79ee7eb
..
0c63653
100644
(file)
--- a/
nbbuild.xml
+++ b/
nbbuild.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/nbproject/project.xml
b/nbproject/project.xml
index
efa19b2
..
8cb5a49
100644
(file)
--- a/
nbproject/project.xml
+++ b/
nbproject/project.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/resources/embl_mapping.xml
b/resources/embl_mapping.xml
index
957d113
..
a98c6f9
100644
(file)
--- a/
resources/embl_mapping.xml
+++ b/
resources/embl_mapping.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/resources/uniprot_mapping.xml
b/resources/uniprot_mapping.xml
index
96edb05
..
ebe8e9c
100755
(executable)
--- a/
resources/uniprot_mapping.xml
+++ b/
resources/uniprot_mapping.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/JalviewWsParamSet.xsd
b/schemas/JalviewWsParamSet.xsd
index
eec9068
..
95c4ade
100644
(file)
--- a/
schemas/JalviewWsParamSet.xsd
+++ b/
schemas/JalviewWsParamSet.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/castor-mapping.xsd
b/schemas/castor-mapping.xsd
index
0e83d72
..
77d6a78
100644
(file)
--- a/
schemas/castor-mapping.xsd
+++ b/
schemas/castor-mapping.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/jalview.nodesc.properties
b/schemas/jalview.nodesc.properties
index
b5af923
..
75ee421
100644
(file)
--- a/
schemas/jalview.nodesc.properties
+++ b/
schemas/jalview.nodesc.properties
@@
-1,5
+1,5
@@
##
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/schemas/jalview.properties
b/schemas/jalview.properties
index
42b5ef7
..
26c8910
100644
(file)
--- a/
schemas/jalview.properties
+++ b/
schemas/jalview.properties
@@
-1,5
+1,5
@@
##
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/schemas/jalview.xsd
b/schemas/jalview.xsd
index
b002618
..
7e995dd
100755
(executable)
--- a/
schemas/jalview.xsd
+++ b/
schemas/jalview.xsd
@@
-1,5
+1,5
@@
<?xml version="1.0" encoding="UTF-8"?>
<?xml version="1.0" encoding="UTF-8"?>
-<!-- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+<!-- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors * * This file is part of
Jalview. * * Jalview is free software: you can redistribute it and/or * modify
it under the terms of the GNU General Public License * as published by the
* Copyright (C) 2015 The Jalview Authors * * This file is part of
Jalview. * * Jalview is free software: you can redistribute it and/or * modify
it under the terms of the GNU General Public License * as published by the
diff --git
a/schemas/jalviewJvV1.xsd
b/schemas/jalviewJvV1.xsd
index
4bce631
..
e693533
100644
(file)
--- a/
schemas/jalviewJvV1.xsd
+++ b/
schemas/jalviewJvV1.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/vamsas.xsd
b/schemas/vamsas.xsd
index
9c95d5f
..
1de0918
100755
(executable)
--- a/
schemas/vamsas.xsd
+++ b/
schemas/vamsas.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/vamsasJvV1.xsd
b/schemas/vamsasJvV1.xsd
index
10587f5
..
fa9697c
100644
(file)
--- a/
schemas/vamsasJvV1.xsd
+++ b/
schemas/vamsasJvV1.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/AppletPDBCanvas.java
b/src/MCview/AppletPDBCanvas.java
index
9cfb4ea
..
515e5c4
100644
(file)
--- a/
src/MCview/AppletPDBCanvas.java
+++ b/
src/MCview/AppletPDBCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/AppletPDBViewer.java
b/src/MCview/AppletPDBViewer.java
index
620d3b8
..
0cfe3bd
100644
(file)
--- a/
src/MCview/AppletPDBViewer.java
+++ b/
src/MCview/AppletPDBViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Atom.java
b/src/MCview/Atom.java
index
b2fb5f5
..
7847ccd
100755
(executable)
--- a/
src/MCview/Atom.java
+++ b/
src/MCview/Atom.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Bond.java
b/src/MCview/Bond.java
index
9a8c614
..
70ebc27
100755
(executable)
--- a/
src/MCview/Bond.java
+++ b/
src/MCview/Bond.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/MCMatrix.java
b/src/MCview/MCMatrix.java
index
e3ba289
..
a9018c7
100755
(executable)
--- a/
src/MCview/MCMatrix.java
+++ b/
src/MCview/MCMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBCanvas.java
b/src/MCview/PDBCanvas.java
index
fdd673b
..
472d791
100644
(file)
--- a/
src/MCview/PDBCanvas.java
+++ b/
src/MCview/PDBCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBChain.java
b/src/MCview/PDBChain.java
index
a6cd575
..
379eb91
100755
(executable)
--- a/
src/MCview/PDBChain.java
+++ b/
src/MCview/PDBChain.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBViewer.java
b/src/MCview/PDBViewer.java
index
364a46e
..
8d454e7
100755
(executable)
--- a/
src/MCview/PDBViewer.java
+++ b/
src/MCview/PDBViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBfile.java
b/src/MCview/PDBfile.java
index
58f8ed5
..
61f10eb
100755
(executable)
--- a/
src/MCview/PDBfile.java
+++ b/
src/MCview/PDBfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Residue.java
b/src/MCview/Residue.java
index
2b0159e
..
d38faa2
100755
(executable)
--- a/
src/MCview/Residue.java
+++ b/
src/MCview/Residue.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Zsort.java
b/src/MCview/Zsort.java
index
e7121d3
..
d57ee55
100755
(executable)
--- a/
src/MCview/Zsort.java
+++ b/
src/MCview/Zsort.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/castor.properties
b/src/castor.properties
index
14fba2d
..
cb955db
100644
(file)
--- a/
src/castor.properties
+++ b/
src/castor.properties
@@
-1,5
+1,5
@@
###############################################################################
###############################################################################
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistry.java
b/src/ext/vamsas/IRegistry.java
index
cd476f5
..
d88da24
100755
(executable)
--- a/
src/ext/vamsas/IRegistry.java
+++ b/
src/ext/vamsas/IRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistryService.java
b/src/ext/vamsas/IRegistryService.java
index
d0d9e53
..
24092a3
100755
(executable)
--- a/
src/ext/vamsas/IRegistryService.java
+++ b/
src/ext/vamsas/IRegistryService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistryServiceLocator.java
b/src/ext/vamsas/IRegistryServiceLocator.java
index
0bd1696
..
ec6814b
100755
(executable)
--- a/
src/ext/vamsas/IRegistryServiceLocator.java
+++ b/
src/ext/vamsas/IRegistryServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/Jpred.java
b/src/ext/vamsas/Jpred.java
index
8cd6797
..
2880fb0
100755
(executable)
--- a/
src/ext/vamsas/Jpred.java
+++ b/
src/ext/vamsas/Jpred.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredService.java
b/src/ext/vamsas/JpredService.java
index
9d32f29
..
dd02dff
100755
(executable)
--- a/
src/ext/vamsas/JpredService.java
+++ b/
src/ext/vamsas/JpredService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredServiceLocator.java
b/src/ext/vamsas/JpredServiceLocator.java
index
937775a
..
d14f3d2
100755
(executable)
--- a/
src/ext/vamsas/JpredServiceLocator.java
+++ b/
src/ext/vamsas/JpredServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredSoapBindingStub.java
b/src/ext/vamsas/JpredSoapBindingStub.java
index
079ce85
..
601552d
100755
(executable)
--- a/
src/ext/vamsas/JpredSoapBindingStub.java
+++ b/
src/ext/vamsas/JpredSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWS.java
b/src/ext/vamsas/MuscleWS.java
index
5e1aaba
..
b21757b
100755
(executable)
--- a/
src/ext/vamsas/MuscleWS.java
+++ b/
src/ext/vamsas/MuscleWS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSService.java
b/src/ext/vamsas/MuscleWSService.java
index
18284c4
..
677d394
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSService.java
+++ b/
src/ext/vamsas/MuscleWSService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSServiceLocator.java
b/src/ext/vamsas/MuscleWSServiceLocator.java
index
c4f83c9
..
11b5fe2
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSServiceLocator.java
+++ b/
src/ext/vamsas/MuscleWSServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSSoapBindingStub.java
b/src/ext/vamsas/MuscleWSSoapBindingStub.java
index
4ea8a26
..
0cfb957
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSSoapBindingStub.java
+++ b/
src/ext/vamsas/MuscleWSSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/RegistryServiceSoapBindingStub.java
b/src/ext/vamsas/RegistryServiceSoapBindingStub.java
index
ffaac05
..
751912c
100755
(executable)
--- a/
src/ext/vamsas/RegistryServiceSoapBindingStub.java
+++ b/
src/ext/vamsas/RegistryServiceSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchI.java
b/src/ext/vamsas/SeqSearchI.java
index
acdea32
..
5232bc2
100644
(file)
--- a/
src/ext/vamsas/SeqSearchI.java
+++ b/
src/ext/vamsas/SeqSearchI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchServiceLocator.java
b/src/ext/vamsas/SeqSearchServiceLocator.java
index
86c3043
..
168342e
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceLocator.java
+++ b/
src/ext/vamsas/SeqSearchServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchServiceService.java
b/src/ext/vamsas/SeqSearchServiceService.java
index
f727ea9
..
3829498
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceService.java
+++ b/
src/ext/vamsas/SeqSearchServiceService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
index
57ce618
..
de7c0da
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
+++ b/
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/ServiceHandle.java
b/src/ext/vamsas/ServiceHandle.java
index
27405f9
..
ce1d229
100755
(executable)
--- a/
src/ext/vamsas/ServiceHandle.java
+++ b/
src/ext/vamsas/ServiceHandle.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/ServiceHandles.java
b/src/ext/vamsas/ServiceHandles.java
index
7ad7c39
..
e667683
100755
(executable)
--- a/
src/ext/vamsas/ServiceHandles.java
+++ b/
src/ext/vamsas/ServiceHandles.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AAFrequency.java
b/src/jalview/analysis/AAFrequency.java
index
3a79959
..
d94befb
100755
(executable)
--- a/
src/jalview/analysis/AAFrequency.java
+++ b/
src/jalview/analysis/AAFrequency.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignSeq.java
b/src/jalview/analysis/AlignSeq.java
index
241eeeb
..
f2f7ea9
100755
(executable)
--- a/
src/jalview/analysis/AlignSeq.java
+++ b/
src/jalview/analysis/AlignSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignmentAnnotationUtils.java
b/src/jalview/analysis/AlignmentAnnotationUtils.java
index
ca618e3
..
3954f8d
100644
(file)
--- a/
src/jalview/analysis/AlignmentAnnotationUtils.java
+++ b/
src/jalview/analysis/AlignmentAnnotationUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignmentSorter.java
b/src/jalview/analysis/AlignmentSorter.java
index
ac861d8
..
103fbf0
100755
(executable)
--- a/
src/jalview/analysis/AlignmentSorter.java
+++ b/
src/jalview/analysis/AlignmentSorter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignmentUtils.java
b/src/jalview/analysis/AlignmentUtils.java
index
4bb3fde
..
707c2f0
100644
(file)
--- a/
src/jalview/analysis/AlignmentUtils.java
+++ b/
src/jalview/analysis/AlignmentUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AnnotationSorter.java
b/src/jalview/analysis/AnnotationSorter.java
index
c1dd6a7
..
9e35330
100644
(file)
--- a/
src/jalview/analysis/AnnotationSorter.java
+++ b/
src/jalview/analysis/AnnotationSorter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/CodingUtils.java
b/src/jalview/analysis/CodingUtils.java
index
91c14c0
..
be47b02
100644
(file)
--- a/
src/jalview/analysis/CodingUtils.java
+++ b/
src/jalview/analysis/CodingUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/CodonComparator.java
b/src/jalview/analysis/CodonComparator.java
index
e978193
..
84b1556
100644
(file)
--- a/
src/jalview/analysis/CodonComparator.java
+++ b/
src/jalview/analysis/CodonComparator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Conservation.java
b/src/jalview/analysis/Conservation.java
index
f12d801
..
d868959
100755
(executable)
--- a/
src/jalview/analysis/Conservation.java
+++ b/
src/jalview/analysis/Conservation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/CrossRef.java
b/src/jalview/analysis/CrossRef.java
index
83317c1
..
946a774
100644
(file)
--- a/
src/jalview/analysis/CrossRef.java
+++ b/
src/jalview/analysis/CrossRef.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Dna.java
b/src/jalview/analysis/Dna.java
index
515bd91
..
810290b
100644
(file)
--- a/
src/jalview/analysis/Dna.java
+++ b/
src/jalview/analysis/Dna.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Finder.java
b/src/jalview/analysis/Finder.java
index
fae459f
..
9b41b97
100644
(file)
--- a/
src/jalview/analysis/Finder.java
+++ b/
src/jalview/analysis/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Grouping.java
b/src/jalview/analysis/Grouping.java
index
18c1bb9
..
b01c815
100644
(file)
--- a/
src/jalview/analysis/Grouping.java
+++ b/
src/jalview/analysis/Grouping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/NJTree.java
b/src/jalview/analysis/NJTree.java
index
e3a68ca
..
ace9540
100644
(file)
--- a/
src/jalview/analysis/NJTree.java
+++ b/
src/jalview/analysis/NJTree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/PCA.java
b/src/jalview/analysis/PCA.java
index
ace4ca4
..
7ad8fbc
100755
(executable)
--- a/
src/jalview/analysis/PCA.java
+++ b/
src/jalview/analysis/PCA.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/ParseProperties.java
b/src/jalview/analysis/ParseProperties.java
index
d186fc8
..
c580c77
100644
(file)
--- a/
src/jalview/analysis/ParseProperties.java
+++ b/
src/jalview/analysis/ParseProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Rna.java
b/src/jalview/analysis/Rna.java
index
588ea6e
..
ca85782
100644
(file)
--- a/
src/jalview/analysis/Rna.java
+++ b/
src/jalview/analysis/Rna.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/SecStrConsensus.java
b/src/jalview/analysis/SecStrConsensus.java
index
bf75811
..
6489bae
100644
(file)
--- a/
src/jalview/analysis/SecStrConsensus.java
+++ b/
src/jalview/analysis/SecStrConsensus.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/SeqsetUtils.java
b/src/jalview/analysis/SeqsetUtils.java
index
c742892
..
437ea98
100755
(executable)
--- a/
src/jalview/analysis/SeqsetUtils.java
+++ b/
src/jalview/analysis/SeqsetUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/SequenceIdMatcher.java
b/src/jalview/analysis/SequenceIdMatcher.java
index
c029ea9
..
a51f2f2
100755
(executable)
--- a/
src/jalview/analysis/SequenceIdMatcher.java
+++ b/
src/jalview/analysis/SequenceIdMatcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/StructureFrequency.java
b/src/jalview/analysis/StructureFrequency.java
index
0fe85d9
..
4bfcd2b
100644
(file)
--- a/
src/jalview/analysis/StructureFrequency.java
+++ b/
src/jalview/analysis/StructureFrequency.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/WUSSParseException.java
b/src/jalview/analysis/WUSSParseException.java
index
b8b4f09
..
f5b22fd
100644
(file)
--- a/
src/jalview/analysis/WUSSParseException.java
+++ b/
src/jalview/analysis/WUSSParseException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/scoremodels/FeatureScoreModel.java
b/src/jalview/analysis/scoremodels/FeatureScoreModel.java
index
2218a0e
..
947640d
100644
(file)
--- a/
src/jalview/analysis/scoremodels/FeatureScoreModel.java
+++ b/
src/jalview/analysis/scoremodels/FeatureScoreModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/scoremodels/PIDScoreModel.java
b/src/jalview/analysis/scoremodels/PIDScoreModel.java
index
b297213
..
ff75e2e
100644
(file)
--- a/
src/jalview/analysis/scoremodels/PIDScoreModel.java
+++ b/
src/jalview/analysis/scoremodels/PIDScoreModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
b/src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
index
46cbee6
..
28eaeb6
100644
(file)
--- a/
src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
+++ b/
src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/scoremodels/SWScoreModel.java
b/src/jalview/analysis/scoremodels/SWScoreModel.java
index
9ba5273
..
6d9a059
100644
(file)
--- a/
src/jalview/analysis/scoremodels/SWScoreModel.java
+++ b/
src/jalview/analysis/scoremodels/SWScoreModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignCalcManagerI.java
b/src/jalview/api/AlignCalcManagerI.java
index
3261f5b
..
0529198
100644
(file)
--- a/
src/jalview/api/AlignCalcManagerI.java
+++ b/
src/jalview/api/AlignCalcManagerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignCalcWorkerI.java
b/src/jalview/api/AlignCalcWorkerI.java
index
3145382
..
6ddd782
100644
(file)
--- a/
src/jalview/api/AlignCalcWorkerI.java
+++ b/
src/jalview/api/AlignCalcWorkerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignExportSettingI.java
b/src/jalview/api/AlignExportSettingI.java
index
72a4164
..
cc09965
100644
(file)
--- a/
src/jalview/api/AlignExportSettingI.java
+++ b/
src/jalview/api/AlignExportSettingI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignViewControllerGuiI.java
b/src/jalview/api/AlignViewControllerGuiI.java
index
db429bc
..
768e78d
100644
(file)
--- a/
src/jalview/api/AlignViewControllerGuiI.java
+++ b/
src/jalview/api/AlignViewControllerGuiI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignViewControllerI.java
b/src/jalview/api/AlignViewControllerI.java
index
d379553
..
5e3cfca
100644
(file)
--- a/
src/jalview/api/AlignViewControllerI.java
+++ b/
src/jalview/api/AlignViewControllerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignViewportI.java
b/src/jalview/api/AlignViewportI.java
index
e533683
..
6bad826
100644
(file)
--- a/
src/jalview/api/AlignViewportI.java
+++ b/
src/jalview/api/AlignViewportI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignmentViewPanel.java
b/src/jalview/api/AlignmentViewPanel.java
index
0408fb1
..
2f2c2f4
100644
(file)
--- a/
src/jalview/api/AlignmentViewPanel.java
+++ b/
src/jalview/api/AlignmentViewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/BuildDetailsI.java
b/src/jalview/api/BuildDetailsI.java
index
8b99aa4
..
1a5ab5b
100644
(file)
--- a/
src/jalview/api/BuildDetailsI.java
+++ b/
src/jalview/api/BuildDetailsI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/ComplexAlignFile.java
b/src/jalview/api/ComplexAlignFile.java
index
8ad2ea7
..
a4201e7
100644
(file)
--- a/
src/jalview/api/ComplexAlignFile.java
+++ b/
src/jalview/api/ComplexAlignFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/FeatureRenderer.java
b/src/jalview/api/FeatureRenderer.java
index
d5adea6
..
d2175e1
100644
(file)
--- a/
src/jalview/api/FeatureRenderer.java
+++ b/
src/jalview/api/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/FeatureSettingsControllerI.java
b/src/jalview/api/FeatureSettingsControllerI.java
index
e2701f2
..
413da9c
100644
(file)
--- a/
src/jalview/api/FeatureSettingsControllerI.java
+++ b/
src/jalview/api/FeatureSettingsControllerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/FeatureSettingsModelI.java
b/src/jalview/api/FeatureSettingsModelI.java
index
7bf680e
..
f85a709
100644
(file)
--- a/
src/jalview/api/FeatureSettingsModelI.java
+++ b/
src/jalview/api/FeatureSettingsModelI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/FeaturesDisplayedI.java
b/src/jalview/api/FeaturesDisplayedI.java
index
a7dc52f
..
0c5028e
100644
(file)
--- a/
src/jalview/api/FeaturesDisplayedI.java
+++ b/
src/jalview/api/FeaturesDisplayedI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/OOMHandlerI.java
b/src/jalview/api/OOMHandlerI.java
index
23d018c
..
609b081
100644
(file)
--- a/
src/jalview/api/OOMHandlerI.java
+++ b/
src/jalview/api/OOMHandlerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/RotatableCanvasI.java
b/src/jalview/api/RotatableCanvasI.java
index
d28693a
..
d96ae93
100644
(file)
--- a/
src/jalview/api/RotatableCanvasI.java
+++ b/
src/jalview/api/RotatableCanvasI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/SequenceRenderer.java
b/src/jalview/api/SequenceRenderer.java
index
55efb8d
..
687f2d8
100644
(file)
--- a/
src/jalview/api/SequenceRenderer.java
+++ b/
src/jalview/api/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/SequenceStructureBinding.java
b/src/jalview/api/SequenceStructureBinding.java
index
d1e658a
..
cbdbbe0
100644
(file)
--- a/
src/jalview/api/SequenceStructureBinding.java
+++ b/
src/jalview/api/SequenceStructureBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/SplitContainerI.java
b/src/jalview/api/SplitContainerI.java
index
23439c6
..
e890aea
100644
(file)
--- a/
src/jalview/api/SplitContainerI.java
+++ b/
src/jalview/api/SplitContainerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/StructureSelectionManagerProvider.java
b/src/jalview/api/StructureSelectionManagerProvider.java
index
89a2df0
..
40189cb
100644
(file)
--- a/
src/jalview/api/StructureSelectionManagerProvider.java
+++ b/
src/jalview/api/StructureSelectionManagerProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/ViewStyleI.java
b/src/jalview/api/ViewStyleI.java
index
8b313dc
..
ef2fc71
100644
(file)
--- a/
src/jalview/api/ViewStyleI.java
+++ b/
src/jalview/api/ViewStyleI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/analysis/ScoreModelI.java
b/src/jalview/api/analysis/ScoreModelI.java
index
4aab6d3
..
21193e1
100644
(file)
--- a/
src/jalview/api/analysis/ScoreModelI.java
+++ b/
src/jalview/api/analysis/ScoreModelI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/analysis/ViewBasedAnalysisI.java
b/src/jalview/api/analysis/ViewBasedAnalysisI.java
index
d366bcf
..
d0cbddc
100644
(file)
--- a/
src/jalview/api/analysis/ViewBasedAnalysisI.java
+++ b/
src/jalview/api/analysis/ViewBasedAnalysisI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/structures/JalviewStructureDisplayI.java
b/src/jalview/api/structures/JalviewStructureDisplayI.java
index
da16800
..
159ceeb
100644
(file)
--- a/
src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/
src/jalview/api/structures/JalviewStructureDisplayI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/APopupMenu.java
b/src/jalview/appletgui/APopupMenu.java
index
a726e3c
..
7379e80
100644
(file)
--- a/
src/jalview/appletgui/APopupMenu.java
+++ b/
src/jalview/appletgui/APopupMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignFrame.java
b/src/jalview/appletgui/AlignFrame.java
index
59c0001
..
3f0d736
100644
(file)
--- a/
src/jalview/appletgui/AlignFrame.java
+++ b/
src/jalview/appletgui/AlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignViewport.java
b/src/jalview/appletgui/AlignViewport.java
index
9256cfc
..
ef09b97
100644
(file)
--- a/
src/jalview/appletgui/AlignViewport.java
+++ b/
src/jalview/appletgui/AlignViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignmentPanel.java
b/src/jalview/appletgui/AlignmentPanel.java
index
d0088a1
..
a677401
100644
(file)
--- a/
src/jalview/appletgui/AlignmentPanel.java
+++ b/
src/jalview/appletgui/AlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationColourChooser.java
b/src/jalview/appletgui/AnnotationColourChooser.java
index
9df3b73
..
f979e62
100644
(file)
--- a/
src/jalview/appletgui/AnnotationColourChooser.java
+++ b/
src/jalview/appletgui/AnnotationColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationColumnChooser.java
b/src/jalview/appletgui/AnnotationColumnChooser.java
index
b32f577
..
9067656
100644
(file)
--- a/
src/jalview/appletgui/AnnotationColumnChooser.java
+++ b/
src/jalview/appletgui/AnnotationColumnChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationLabels.java
b/src/jalview/appletgui/AnnotationLabels.java
index
201cfae
..
e066d0a
100755
(executable)
--- a/
src/jalview/appletgui/AnnotationLabels.java
+++ b/
src/jalview/appletgui/AnnotationLabels.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationPanel.java
b/src/jalview/appletgui/AnnotationPanel.java
index
2dfa480
..
4974abe
100755
(executable)
--- a/
src/jalview/appletgui/AnnotationPanel.java
+++ b/
src/jalview/appletgui/AnnotationPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationRowFilter.java
b/src/jalview/appletgui/AnnotationRowFilter.java
index
45f7454
..
97cfa47
100644
(file)
--- a/
src/jalview/appletgui/AnnotationRowFilter.java
+++ b/
src/jalview/appletgui/AnnotationRowFilter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AppletJmol.java
b/src/jalview/appletgui/AppletJmol.java
index
c9f275b
..
f29ae77
100644
(file)
--- a/
src/jalview/appletgui/AppletJmol.java
+++ b/
src/jalview/appletgui/AppletJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AppletJmolBinding.java
b/src/jalview/appletgui/AppletJmolBinding.java
index
f7a121c
..
6c30eed
100644
(file)
--- a/
src/jalview/appletgui/AppletJmolBinding.java
+++ b/
src/jalview/appletgui/AppletJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/CutAndPasteTransfer.java
b/src/jalview/appletgui/CutAndPasteTransfer.java
index
b108029
..
4a33e50
100644
(file)
--- a/
src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/
src/jalview/appletgui/CutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/EditNameDialog.java
b/src/jalview/appletgui/EditNameDialog.java
index
3ebe791
..
1bb1535
100644
(file)
--- a/
src/jalview/appletgui/EditNameDialog.java
+++ b/
src/jalview/appletgui/EditNameDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/EmbmenuFrame.java
b/src/jalview/appletgui/EmbmenuFrame.java
index
906933a
..
fdd7d46
100644
(file)
--- a/
src/jalview/appletgui/EmbmenuFrame.java
+++ b/
src/jalview/appletgui/EmbmenuFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/ExtJmol.java
b/src/jalview/appletgui/ExtJmol.java
index
6479296
..
3e1f1b4
100644
(file)
--- a/
src/jalview/appletgui/ExtJmol.java
+++ b/
src/jalview/appletgui/ExtJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureColourChooser.java
b/src/jalview/appletgui/FeatureColourChooser.java
index
e6e87f2
..
eb573db
100644
(file)
--- a/
src/jalview/appletgui/FeatureColourChooser.java
+++ b/
src/jalview/appletgui/FeatureColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureRenderer.java
b/src/jalview/appletgui/FeatureRenderer.java
index
1dc48d2
..
690b55e
100644
(file)
--- a/
src/jalview/appletgui/FeatureRenderer.java
+++ b/
src/jalview/appletgui/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureSettings.java
b/src/jalview/appletgui/FeatureSettings.java
index
01e096e
..
b4e8dd9
100755
(executable)
--- a/
src/jalview/appletgui/FeatureSettings.java
+++ b/
src/jalview/appletgui/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/Finder.java
b/src/jalview/appletgui/Finder.java
index
b1dcb88
..
a163e3e
100644
(file)
--- a/
src/jalview/appletgui/Finder.java
+++ b/
src/jalview/appletgui/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FontChooser.java
b/src/jalview/appletgui/FontChooser.java
index
8ada2e9
..
f9cdf86
100644
(file)
--- a/
src/jalview/appletgui/FontChooser.java
+++ b/
src/jalview/appletgui/FontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdCanvas.java
b/src/jalview/appletgui/IdCanvas.java
index
58a4f10
..
94cca88
100755
(executable)
--- a/
src/jalview/appletgui/IdCanvas.java
+++ b/
src/jalview/appletgui/IdCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdPanel.java
b/src/jalview/appletgui/IdPanel.java
index
eba52d5
..
cf260b9
100755
(executable)
--- a/
src/jalview/appletgui/IdPanel.java
+++ b/
src/jalview/appletgui/IdPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdwidthAdjuster.java
b/src/jalview/appletgui/IdwidthAdjuster.java
index
fe52738
..
589bbae
100755
(executable)
--- a/
src/jalview/appletgui/IdwidthAdjuster.java
+++ b/
src/jalview/appletgui/IdwidthAdjuster.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/JVDialog.java
b/src/jalview/appletgui/JVDialog.java
index
508cd1d
..
261f1c2
100644
(file)
--- a/
src/jalview/appletgui/JVDialog.java
+++ b/
src/jalview/appletgui/JVDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/OverviewPanel.java
b/src/jalview/appletgui/OverviewPanel.java
index
3a6fe49
..
b92229f
100755
(executable)
--- a/
src/jalview/appletgui/OverviewPanel.java
+++ b/
src/jalview/appletgui/OverviewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PCAPanel.java
b/src/jalview/appletgui/PCAPanel.java
index
b0b8c9c
..
59b37fd
100644
(file)
--- a/
src/jalview/appletgui/PCAPanel.java
+++ b/
src/jalview/appletgui/PCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PaintRefresher.java
b/src/jalview/appletgui/PaintRefresher.java
index
7724880
..
15af882
100755
(executable)
--- a/
src/jalview/appletgui/PaintRefresher.java
+++ b/
src/jalview/appletgui/PaintRefresher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PairwiseAlignPanel.java
b/src/jalview/appletgui/PairwiseAlignPanel.java
index
1c95c12
..
d25cf7f
100644
(file)
--- a/
src/jalview/appletgui/PairwiseAlignPanel.java
+++ b/
src/jalview/appletgui/PairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/RedundancyPanel.java
b/src/jalview/appletgui/RedundancyPanel.java
index
d0fcd58
..
8e014fa
100644
(file)
--- a/
src/jalview/appletgui/RedundancyPanel.java
+++ b/
src/jalview/appletgui/RedundancyPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/RotatableCanvas.java
b/src/jalview/appletgui/RotatableCanvas.java
index
f38d291
..
52e7b67
100755
(executable)
--- a/
src/jalview/appletgui/RotatableCanvas.java
+++ b/
src/jalview/appletgui/RotatableCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/ScalePanel.java
b/src/jalview/appletgui/ScalePanel.java
index
2445e2c
..
60fb365
100755
(executable)
--- a/
src/jalview/appletgui/ScalePanel.java
+++ b/
src/jalview/appletgui/ScalePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SeqCanvas.java
b/src/jalview/appletgui/SeqCanvas.java
index
7689535
..
aec6e94
100755
(executable)
--- a/
src/jalview/appletgui/SeqCanvas.java
+++ b/
src/jalview/appletgui/SeqCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SeqPanel.java
b/src/jalview/appletgui/SeqPanel.java
index
9fde76d
..
97830a3
100644
(file)
--- a/
src/jalview/appletgui/SeqPanel.java
+++ b/
src/jalview/appletgui/SeqPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SequenceRenderer.java
b/src/jalview/appletgui/SequenceRenderer.java
index
b843526
..
29e51c5
100755
(executable)
--- a/
src/jalview/appletgui/SequenceRenderer.java
+++ b/
src/jalview/appletgui/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SliderPanel.java
b/src/jalview/appletgui/SliderPanel.java
index
d49cd6c
..
d506e5f
100644
(file)
--- a/
src/jalview/appletgui/SliderPanel.java
+++ b/
src/jalview/appletgui/SliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SplitFrame.java
b/src/jalview/appletgui/SplitFrame.java
index
b1b855d
..
9b58659
100644
(file)
--- a/
src/jalview/appletgui/SplitFrame.java
+++ b/
src/jalview/appletgui/SplitFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/TitledPanel.java
b/src/jalview/appletgui/TitledPanel.java
index
64a8cbc
..
8502453
100644
(file)
--- a/
src/jalview/appletgui/TitledPanel.java
+++ b/
src/jalview/appletgui/TitledPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/Tooltip.java
b/src/jalview/appletgui/Tooltip.java
index
e16c594
..
a1a9888
100755
(executable)
--- a/
src/jalview/appletgui/Tooltip.java
+++ b/
src/jalview/appletgui/Tooltip.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/TreeCanvas.java
b/src/jalview/appletgui/TreeCanvas.java
index
8d0cc42
..
4326b6a
100755
(executable)
--- a/
src/jalview/appletgui/TreeCanvas.java
+++ b/
src/jalview/appletgui/TreeCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/TreePanel.java
b/src/jalview/appletgui/TreePanel.java
index
64716b0
..
2e0edfd
100644
(file)
--- a/
src/jalview/appletgui/TreePanel.java
+++ b/
src/jalview/appletgui/TreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/UserDefinedColours.java
b/src/jalview/appletgui/UserDefinedColours.java
index
de3569a
..
d4ba9e5
100644
(file)
--- a/
src/jalview/appletgui/UserDefinedColours.java
+++ b/
src/jalview/appletgui/UserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/BuildDetails.java
b/src/jalview/bin/BuildDetails.java
index
f26afba
..
3445cc9
100644
(file)
--- a/
src/jalview/bin/BuildDetails.java
+++ b/
src/jalview/bin/BuildDetails.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/Cache.java
b/src/jalview/bin/Cache.java
index
a7c002c
..
ca01027
100755
(executable)
--- a/
src/jalview/bin/Cache.java
+++ b/
src/jalview/bin/Cache.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/Jalview.java
b/src/jalview/bin/Jalview.java
index
f28f5f8
..
fcee9e1
100755
(executable)
--- a/
src/jalview/bin/Jalview.java
+++ b/
src/jalview/bin/Jalview.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/JalviewLite.java
b/src/jalview/bin/JalviewLite.java
index
6c8e533
..
9526ae9
100644
(file)
--- a/
src/jalview/bin/JalviewLite.java
+++ b/
src/jalview/bin/JalviewLite.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/JalviewLiteURLRetrieve.java
b/src/jalview/bin/JalviewLiteURLRetrieve.java
index
4167aa2
..
8e14d3b
100644
(file)
--- a/
src/jalview/bin/JalviewLiteURLRetrieve.java
+++ b/
src/jalview/bin/JalviewLiteURLRetrieve.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/ChangeCaseCommand.java
b/src/jalview/commands/ChangeCaseCommand.java
index
b68b47c
..
6a1287a
100644
(file)
--- a/
src/jalview/commands/ChangeCaseCommand.java
+++ b/
src/jalview/commands/ChangeCaseCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/CommandI.java
b/src/jalview/commands/CommandI.java
index
291dcde
..
0f19297
100644
(file)
--- a/
src/jalview/commands/CommandI.java
+++ b/
src/jalview/commands/CommandI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/EditCommand.java
b/src/jalview/commands/EditCommand.java
index
7a04949
..
7509fde
100644
(file)
--- a/
src/jalview/commands/EditCommand.java
+++ b/
src/jalview/commands/EditCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/OrderCommand.java
b/src/jalview/commands/OrderCommand.java
index
393044d
..
f6d3b46
100644
(file)
--- a/
src/jalview/commands/OrderCommand.java
+++ b/
src/jalview/commands/OrderCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/RemoveGapColCommand.java
b/src/jalview/commands/RemoveGapColCommand.java
index
c9d8b56
..
1f068e4
100644
(file)
--- a/
src/jalview/commands/RemoveGapColCommand.java
+++ b/
src/jalview/commands/RemoveGapColCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/RemoveGapsCommand.java
b/src/jalview/commands/RemoveGapsCommand.java
index
c81f04f
..
8513e0d
100644
(file)
--- a/
src/jalview/commands/RemoveGapsCommand.java
+++ b/
src/jalview/commands/RemoveGapsCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/SlideSequencesCommand.java
b/src/jalview/commands/SlideSequencesCommand.java
index
153371a
..
9299bcf
100644
(file)
--- a/
src/jalview/commands/SlideSequencesCommand.java
+++ b/
src/jalview/commands/SlideSequencesCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/TrimRegionCommand.java
b/src/jalview/commands/TrimRegionCommand.java
index
32b9847
..
b745d7a
100644
(file)
--- a/
src/jalview/commands/TrimRegionCommand.java
+++ b/
src/jalview/commands/TrimRegionCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/controller/AlignViewController.java
b/src/jalview/controller/AlignViewController.java
index
fd5a873
..
a069dcc
100644
(file)
--- a/
src/jalview/controller/AlignViewController.java
+++ b/
src/jalview/controller/AlignViewController.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/controller/FeatureSettingsController.java
b/src/jalview/controller/FeatureSettingsController.java
index
99fc355
..
6e3814f
100644
(file)
--- a/
src/jalview/controller/FeatureSettingsController.java
+++ b/
src/jalview/controller/FeatureSettingsController.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/controller/FeatureSettingsControllerGuiI.java
b/src/jalview/controller/FeatureSettingsControllerGuiI.java
index
80c91fd
..
11481c8
100644
(file)
--- a/
src/jalview/controller/FeatureSettingsControllerGuiI.java
+++ b/
src/jalview/controller/FeatureSettingsControllerGuiI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/ASequence.java
b/src/jalview/datamodel/ASequence.java
index
3913afc
..
5b2557f
100755
(executable)
--- a/
src/jalview/datamodel/ASequence.java
+++ b/
src/jalview/datamodel/ASequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/ASequenceI.java
b/src/jalview/datamodel/ASequenceI.java
index
005f3c7
..
64cba1e
100755
(executable)
--- a/
src/jalview/datamodel/ASequenceI.java
+++ b/
src/jalview/datamodel/ASequenceI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignedCodon.java
b/src/jalview/datamodel/AlignedCodon.java
index
a9ca1e3
..
f88d5a6
100644
(file)
--- a/
src/jalview/datamodel/AlignedCodon.java
+++ b/
src/jalview/datamodel/AlignedCodon.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignedCodonFrame.java
b/src/jalview/datamodel/AlignedCodonFrame.java
index
b361717
..
05492e8
100644
(file)
--- a/
src/jalview/datamodel/AlignedCodonFrame.java
+++ b/
src/jalview/datamodel/AlignedCodonFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
75b18d9
..
ef961d0
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentAnnotation.java
b/src/jalview/datamodel/AlignmentAnnotation.java
index
95141e6
..
c140aa1
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentAnnotation.java
+++ b/
src/jalview/datamodel/AlignmentAnnotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentExportData.java
b/src/jalview/datamodel/AlignmentExportData.java
index
3aaae1f
..
4a94997
100644
(file)
--- a/
src/jalview/datamodel/AlignmentExportData.java
+++ b/
src/jalview/datamodel/AlignmentExportData.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentI.java
b/src/jalview/datamodel/AlignmentI.java
index
6d257a9
..
fccbea9
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentI.java
+++ b/
src/jalview/datamodel/AlignmentI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentOrder.java
b/src/jalview/datamodel/AlignmentOrder.java
index
9023ade
..
67fc2c3
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentOrder.java
+++ b/
src/jalview/datamodel/AlignmentOrder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentView.java
b/src/jalview/datamodel/AlignmentView.java
index
88e9a9c
..
e7c9316
100644
(file)
--- a/
src/jalview/datamodel/AlignmentView.java
+++ b/
src/jalview/datamodel/AlignmentView.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AnnotatedCollectionI.java
b/src/jalview/datamodel/AnnotatedCollectionI.java
index
0c159b3
..
7ebdd7f
100644
(file)
--- a/
src/jalview/datamodel/AnnotatedCollectionI.java
+++ b/
src/jalview/datamodel/AnnotatedCollectionI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Annotation.java
b/src/jalview/datamodel/Annotation.java
index
1900826
..
63ef590
100755
(executable)
--- a/
src/jalview/datamodel/Annotation.java
+++ b/
src/jalview/datamodel/Annotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/BinaryNode.java
b/src/jalview/datamodel/BinaryNode.java
index
ec6e346
..
6ee6efd
100755
(executable)
--- a/
src/jalview/datamodel/BinaryNode.java
+++ b/
src/jalview/datamodel/BinaryNode.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/BinarySequence.java
b/src/jalview/datamodel/BinarySequence.java
index
ff2784d
..
ceecb74
100755
(executable)
--- a/
src/jalview/datamodel/BinarySequence.java
+++ b/
src/jalview/datamodel/BinarySequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarArray.java
b/src/jalview/datamodel/CigarArray.java
index
61f3c33
..
c13b32c
100644
(file)
--- a/
src/jalview/datamodel/CigarArray.java
+++ b/
src/jalview/datamodel/CigarArray.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarBase.java
b/src/jalview/datamodel/CigarBase.java
index
0dfa84d
..
420a95e
100644
(file)
--- a/
src/jalview/datamodel/CigarBase.java
+++ b/
src/jalview/datamodel/CigarBase.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarCigar.java
b/src/jalview/datamodel/CigarCigar.java
index
f65a3c1
..
a94013b
100644
(file)
--- a/
src/jalview/datamodel/CigarCigar.java
+++ b/
src/jalview/datamodel/CigarCigar.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarSimple.java
b/src/jalview/datamodel/CigarSimple.java
index
00e120d
..
e618679
100644
(file)
--- a/
src/jalview/datamodel/CigarSimple.java
+++ b/
src/jalview/datamodel/CigarSimple.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/ColumnSelection.java
b/src/jalview/datamodel/ColumnSelection.java
index
15bbffa
..
8559df9
100644
(file)
--- a/
src/jalview/datamodel/ColumnSelection.java
+++ b/
src/jalview/datamodel/ColumnSelection.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/DBRefEntry.java
b/src/jalview/datamodel/DBRefEntry.java
index
bc5588a
..
c5b29bc
100755
(executable)
--- a/
src/jalview/datamodel/DBRefEntry.java
+++ b/
src/jalview/datamodel/DBRefEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/DBRefSource.java
b/src/jalview/datamodel/DBRefSource.java
index
3982802
..
499179b
100755
(executable)
--- a/
src/jalview/datamodel/DBRefSource.java
+++ b/
src/jalview/datamodel/DBRefSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/FeatureProperties.java
b/src/jalview/datamodel/FeatureProperties.java
index
17a2e64
..
c6e8ce3
100644
(file)
--- a/
src/jalview/datamodel/FeatureProperties.java
+++ b/
src/jalview/datamodel/FeatureProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/GraphLine.java
b/src/jalview/datamodel/GraphLine.java
index
5fdd946
..
a3d5b77
100755
(executable)
--- a/
src/jalview/datamodel/GraphLine.java
+++ b/
src/jalview/datamodel/GraphLine.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/HiddenSequences.java
b/src/jalview/datamodel/HiddenSequences.java
index
09c1b78
..
db3e64c
100755
(executable)
--- a/
src/jalview/datamodel/HiddenSequences.java
+++ b/
src/jalview/datamodel/HiddenSequences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/IncompleteCodonException.java
b/src/jalview/datamodel/IncompleteCodonException.java
index
f2b5a50
..
9fce1e4
100644
(file)
--- a/
src/jalview/datamodel/IncompleteCodonException.java
+++ b/
src/jalview/datamodel/IncompleteCodonException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Mapping.java
b/src/jalview/datamodel/Mapping.java
index
7dffdae
..
e585457
100644
(file)
--- a/
src/jalview/datamodel/Mapping.java
+++ b/
src/jalview/datamodel/Mapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/NodeTransformI.java
b/src/jalview/datamodel/NodeTransformI.java
index
4bc3871
..
c31bd27
100644
(file)
--- a/
src/jalview/datamodel/NodeTransformI.java
+++ b/
src/jalview/datamodel/NodeTransformI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/PDBEntry.java
b/src/jalview/datamodel/PDBEntry.java
index
06790d7
..
95043cc
100755
(executable)
--- a/
src/jalview/datamodel/PDBEntry.java
+++ b/
src/jalview/datamodel/PDBEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Provenance.java
b/src/jalview/datamodel/Provenance.java
index
48752aa
..
478e6b0
100755
(executable)
--- a/
src/jalview/datamodel/Provenance.java
+++ b/
src/jalview/datamodel/Provenance.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/ProvenanceEntry.java
b/src/jalview/datamodel/ProvenanceEntry.java
index
8f168ab
..
5ba9ee5
100755
(executable)
--- a/
src/jalview/datamodel/ProvenanceEntry.java
+++ b/
src/jalview/datamodel/ProvenanceEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/RnaViewerModel.java
b/src/jalview/datamodel/RnaViewerModel.java
index
d76c28e
..
afbea73
100644
(file)
--- a/
src/jalview/datamodel/RnaViewerModel.java
+++ b/
src/jalview/datamodel/RnaViewerModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SearchResults.java
b/src/jalview/datamodel/SearchResults.java
index
d9d12db
..
629edb7
100755
(executable)
--- a/
src/jalview/datamodel/SearchResults.java
+++ b/
src/jalview/datamodel/SearchResults.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SecondaryStructureAnnotation.java
b/src/jalview/datamodel/SecondaryStructureAnnotation.java
index
e488265
..
3bf46e4
100644
(file)
--- a/
src/jalview/datamodel/SecondaryStructureAnnotation.java
+++ b/
src/jalview/datamodel/SecondaryStructureAnnotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SeqCigar.java
b/src/jalview/datamodel/SeqCigar.java
index
33cfda4
..
b4e0d71
100644
(file)
--- a/
src/jalview/datamodel/SeqCigar.java
+++ b/
src/jalview/datamodel/SeqCigar.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Sequence.java
b/src/jalview/datamodel/Sequence.java
index
def9c47
..
4506742
100755
(executable)
--- a/
src/jalview/datamodel/Sequence.java
+++ b/
src/jalview/datamodel/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceCollectionI.java
b/src/jalview/datamodel/SequenceCollectionI.java
index
96c7af8
..
0ed0e3b
100644
(file)
--- a/
src/jalview/datamodel/SequenceCollectionI.java
+++ b/
src/jalview/datamodel/SequenceCollectionI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceDummy.java
b/src/jalview/datamodel/SequenceDummy.java
index
e189f31
..
480cf1b
100644
(file)
--- a/
src/jalview/datamodel/SequenceDummy.java
+++ b/
src/jalview/datamodel/SequenceDummy.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceFeature.java
b/src/jalview/datamodel/SequenceFeature.java
index
674f1e7
..
cd26506
100755
(executable)
--- a/
src/jalview/datamodel/SequenceFeature.java
+++ b/
src/jalview/datamodel/SequenceFeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
c02a5e3
..
cda2af1
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
30ba758
..
92a8657
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceNode.java
b/src/jalview/datamodel/SequenceNode.java
index
84b1069
..
13f4eb9
100755
(executable)
--- a/
src/jalview/datamodel/SequenceNode.java
+++ b/
src/jalview/datamodel/SequenceNode.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequencePoint.java
b/src/jalview/datamodel/SequencePoint.java
index
122400a
..
a21209a
100755
(executable)
--- a/
src/jalview/datamodel/SequencePoint.java
+++ b/
src/jalview/datamodel/SequencePoint.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/StructureViewerModel.java
b/src/jalview/datamodel/StructureViewerModel.java
index
9a23813
..
5396f1f
100644
(file)
--- a/
src/jalview/datamodel/StructureViewerModel.java
+++ b/
src/jalview/datamodel/StructureViewerModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotEntry.java
b/src/jalview/datamodel/UniprotEntry.java
index
e1a09ea
..
e9bf221
100755
(executable)
--- a/
src/jalview/datamodel/UniprotEntry.java
+++ b/
src/jalview/datamodel/UniprotEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotFile.java
b/src/jalview/datamodel/UniprotFile.java
index
0f61b89
..
c922d20
100755
(executable)
--- a/
src/jalview/datamodel/UniprotFile.java
+++ b/
src/jalview/datamodel/UniprotFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotProteinName.java
b/src/jalview/datamodel/UniprotProteinName.java
index
2e6a0dc
..
b04c8fa
100755
(executable)
--- a/
src/jalview/datamodel/UniprotProteinName.java
+++ b/
src/jalview/datamodel/UniprotProteinName.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotSequence.java
b/src/jalview/datamodel/UniprotSequence.java
index
c9b84fa
..
a4551ce
100755
(executable)
--- a/
src/jalview/datamodel/UniprotSequence.java
+++ b/
src/jalview/datamodel/UniprotSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/BasePosition.java
b/src/jalview/datamodel/xdb/embl/BasePosition.java
index
d3ad382
..
fa0f36a
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/BasePosition.java
+++ b/
src/jalview/datamodel/xdb/embl/BasePosition.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblEntry.java
b/src/jalview/datamodel/xdb/embl/EmblEntry.java
index
f5dfef4
..
27aee24
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblEntry.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblError.java
b/src/jalview/datamodel/xdb/embl/EmblError.java
index
232d15e
..
802dd2f
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblError.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblError.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeature.java
b/src/jalview/datamodel/xdb/embl/EmblFeature.java
index
55d7c94
..
935cc0b
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeature.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
b/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
index
d146484
..
639cde6
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
b/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
index
94105ae
..
6859d61
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFile.java
b/src/jalview/datamodel/xdb/embl/EmblFile.java
index
bea5e07
..
90e70a0
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFile.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblSequence.java
b/src/jalview/datamodel/xdb/embl/EmblSequence.java
index
914041d
..
04d4f87
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblSequence.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/Qualifier.java
b/src/jalview/datamodel/xdb/embl/Qualifier.java
index
9020bbe
..
87a45de
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/Qualifier.java
+++ b/
src/jalview/datamodel/xdb/embl/Qualifier.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/exceptions/JalviewException.java
b/src/jalview/exceptions/JalviewException.java
index
e7a88f1
..
8b05e16
100644
(file)
--- a/
src/jalview/exceptions/JalviewException.java
+++ b/
src/jalview/exceptions/JalviewException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/exceptions/NoFileSelectedException.java
b/src/jalview/exceptions/NoFileSelectedException.java
index
5d38acf
..
d03e219
100644
(file)
--- a/
src/jalview/exceptions/NoFileSelectedException.java
+++ b/
src/jalview/exceptions/NoFileSelectedException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/jmol/JalviewJmolBinding.java
b/src/jalview/ext/jmol/JalviewJmolBinding.java
index
58325fd
..
d9b4d70
100644
(file)
--- a/
src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/
src/jalview/ext/jmol/JalviewJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/jmol/JmolCommands.java
b/src/jalview/ext/jmol/JmolCommands.java
index
9ca2548
..
333a422
100644
(file)
--- a/
src/jalview/ext/jmol/JmolCommands.java
+++ b/
src/jalview/ext/jmol/JmolCommands.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/jmol/PDBFileWithJmol.java
b/src/jalview/ext/jmol/PDBFileWithJmol.java
index
69cb8bd
..
dccc9a4
100644
(file)
--- a/
src/jalview/ext/jmol/PDBFileWithJmol.java
+++ b/
src/jalview/ext/jmol/PDBFileWithJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/paradise/Annotate3D.java
b/src/jalview/ext/paradise/Annotate3D.java
index
885945e
..
8b74d59
100644
(file)
--- a/
src/jalview/ext/paradise/Annotate3D.java
+++ b/
src/jalview/ext/paradise/Annotate3D.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
b/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
index
a529502
..
0aa48ac
100644
(file)
--- a/
src/jalview/ext/rbvi/chimera/ChimeraCommands.java
+++ b/
src/jalview/ext/rbvi/chimera/ChimeraCommands.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/rbvi/chimera/ChimeraListener.java
b/src/jalview/ext/rbvi/chimera/ChimeraListener.java
index
979955a
..
95a5b76
100644
(file)
--- a/
src/jalview/ext/rbvi/chimera/ChimeraListener.java
+++ b/
src/jalview/ext/rbvi/chimera/ChimeraListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
b/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
index
415fc1b
..
7cd657a
100644
(file)
--- a/
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
+++ b/
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/varna/JalviewVarnaBinding.java
b/src/jalview/ext/varna/JalviewVarnaBinding.java
index
3bec35a
..
3a1602b
100644
(file)
--- a/
src/jalview/ext/varna/JalviewVarnaBinding.java
+++ b/
src/jalview/ext/varna/JalviewVarnaBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/varna/RnaModel.java
b/src/jalview/ext/varna/RnaModel.java
index
2a8de6e
..
c772ca0
100644
(file)
--- a/
src/jalview/ext/varna/RnaModel.java
+++ b/
src/jalview/ext/varna/RnaModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/varna/VarnaCommands.java
b/src/jalview/ext/varna/VarnaCommands.java
index
f2a2b63
..
6a12712
100644
(file)
--- a/
src/jalview/ext/varna/VarnaCommands.java
+++ b/
src/jalview/ext/varna/VarnaCommands.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignExportSettings.java
b/src/jalview/gui/AlignExportSettings.java
index
04849d8
..
4ed4518
100644
(file)
--- a/
src/jalview/gui/AlignExportSettings.java
+++ b/
src/jalview/gui/AlignExportSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
b2a4cf8
..
a83438c
100644
(file)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignViewport.java
b/src/jalview/gui/AlignViewport.java
index
9aac56d
..
aca89a3
100644
(file)
--- a/
src/jalview/gui/AlignViewport.java
+++ b/
src/jalview/gui/AlignViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignmentPanel.java
b/src/jalview/gui/AlignmentPanel.java
index
e9ac7f3
..
9e9f1c1
100644
(file)
--- a/
src/jalview/gui/AlignmentPanel.java
+++ b/
src/jalview/gui/AlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationChooser.java
b/src/jalview/gui/AnnotationChooser.java
index
35b6032
..
dc8ab4e
100644
(file)
--- a/
src/jalview/gui/AnnotationChooser.java
+++ b/
src/jalview/gui/AnnotationChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationColourChooser.java
b/src/jalview/gui/AnnotationColourChooser.java
index
adfb520
..
0c3bbcb
100644
(file)
--- a/
src/jalview/gui/AnnotationColourChooser.java
+++ b/
src/jalview/gui/AnnotationColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationColumnChooser.java
b/src/jalview/gui/AnnotationColumnChooser.java
index
6b66d9c
..
32f3ccd
100644
(file)
--- a/
src/jalview/gui/AnnotationColumnChooser.java
+++ b/
src/jalview/gui/AnnotationColumnChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationExporter.java
b/src/jalview/gui/AnnotationExporter.java
index
f7b7c61
..
4623892
100644
(file)
--- a/
src/jalview/gui/AnnotationExporter.java
+++ b/
src/jalview/gui/AnnotationExporter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationLabels.java
b/src/jalview/gui/AnnotationLabels.java
index
60324e5
..
d637414
100755
(executable)
--- a/
src/jalview/gui/AnnotationLabels.java
+++ b/
src/jalview/gui/AnnotationLabels.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationPanel.java
b/src/jalview/gui/AnnotationPanel.java
index
3f4c92a
..
671d964
100755
(executable)
--- a/
src/jalview/gui/AnnotationPanel.java
+++ b/
src/jalview/gui/AnnotationPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationRowFilter.java
b/src/jalview/gui/AnnotationRowFilter.java
index
de6a9d2
..
a64b43b
100644
(file)
--- a/
src/jalview/gui/AnnotationRowFilter.java
+++ b/
src/jalview/gui/AnnotationRowFilter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppJmol.java
b/src/jalview/gui/AppJmol.java
index
9bd729f
..
a34749d
100644
(file)
--- a/
src/jalview/gui/AppJmol.java
+++ b/
src/jalview/gui/AppJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppJmolBinding.java
b/src/jalview/gui/AppJmolBinding.java
index
eb15a65
..
8d1d9bf
100644
(file)
--- a/
src/jalview/gui/AppJmolBinding.java
+++ b/
src/jalview/gui/AppJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppVarna.java
b/src/jalview/gui/AppVarna.java
index
3742864
..
038de29
100644
(file)
--- a/
src/jalview/gui/AppVarna.java
+++ b/
src/jalview/gui/AppVarna.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppVarnaBinding.java
b/src/jalview/gui/AppVarnaBinding.java
index
366dc06
..
0a3685e
100644
(file)
--- a/
src/jalview/gui/AppVarnaBinding.java
+++ b/
src/jalview/gui/AppVarnaBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AssociatePdbFileWithSeq.java
b/src/jalview/gui/AssociatePdbFileWithSeq.java
index
f67d6da
..
bbeabde
100644
(file)
--- a/
src/jalview/gui/AssociatePdbFileWithSeq.java
+++ b/
src/jalview/gui/AssociatePdbFileWithSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/BlogReader.java
b/src/jalview/gui/BlogReader.java
index
5baed16
..
2fd6dd5
100644
(file)
--- a/
src/jalview/gui/BlogReader.java
+++ b/
src/jalview/gui/BlogReader.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ChimeraViewFrame.java
b/src/jalview/gui/ChimeraViewFrame.java
index
c902093
..
2339636
100644
(file)
--- a/
src/jalview/gui/ChimeraViewFrame.java
+++ b/
src/jalview/gui/ChimeraViewFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Console.java
b/src/jalview/gui/Console.java
index
4118f91
..
f0ef2f3
100644
(file)
--- a/
src/jalview/gui/Console.java
+++ b/
src/jalview/gui/Console.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/CutAndPasteHtmlTransfer.java
b/src/jalview/gui/CutAndPasteHtmlTransfer.java
index
7fded36
..
596f0b6
100644
(file)
--- a/
src/jalview/gui/CutAndPasteHtmlTransfer.java
+++ b/
src/jalview/gui/CutAndPasteHtmlTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/CutAndPasteTransfer.java
b/src/jalview/gui/CutAndPasteTransfer.java
index
417c509
..
bfe030d
100644
(file)
--- a/
src/jalview/gui/CutAndPasteTransfer.java
+++ b/
src/jalview/gui/CutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/DasSourceBrowser.java
b/src/jalview/gui/DasSourceBrowser.java
index
c0fefd1
..
dea528d
100644
(file)
--- a/
src/jalview/gui/DasSourceBrowser.java
+++ b/
src/jalview/gui/DasSourceBrowser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Desktop.java
b/src/jalview/gui/Desktop.java
index
e4535ff
..
e51f9be
100644
(file)
--- a/
src/jalview/gui/Desktop.java
+++ b/
src/jalview/gui/Desktop.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/EPSOptions.java
b/src/jalview/gui/EPSOptions.java
index
73abeaf
..
c920373
100644
(file)
--- a/
src/jalview/gui/EPSOptions.java
+++ b/
src/jalview/gui/EPSOptions.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/EditNameDialog.java
b/src/jalview/gui/EditNameDialog.java
index
8c67f6e
..
1e6b38d
100644
(file)
--- a/
src/jalview/gui/EditNameDialog.java
+++ b/
src/jalview/gui/EditNameDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureColourChooser.java
b/src/jalview/gui/FeatureColourChooser.java
index
25527dc
..
8ea2a3b
100644
(file)
--- a/
src/jalview/gui/FeatureColourChooser.java
+++ b/
src/jalview/gui/FeatureColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureRenderer.java
b/src/jalview/gui/FeatureRenderer.java
index
89e94c8
..
e3ea9cf
100644
(file)
--- a/
src/jalview/gui/FeatureRenderer.java
+++ b/
src/jalview/gui/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureSettings.java
b/src/jalview/gui/FeatureSettings.java
index
a2d0559
..
8d1c812
100644
(file)
--- a/
src/jalview/gui/FeatureSettings.java
+++ b/
src/jalview/gui/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Finder.java
b/src/jalview/gui/Finder.java
index
1a7da1f
..
d417136
100755
(executable)
--- a/
src/jalview/gui/Finder.java
+++ b/
src/jalview/gui/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FontChooser.java
b/src/jalview/gui/FontChooser.java
index
df3bfc2
..
78b4ff5
100755
(executable)
--- a/
src/jalview/gui/FontChooser.java
+++ b/
src/jalview/gui/FontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/HTMLOptions.java
b/src/jalview/gui/HTMLOptions.java
index
2b9f764
..
e73a01e
100644
(file)
--- a/
src/jalview/gui/HTMLOptions.java
+++ b/
src/jalview/gui/HTMLOptions.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Help.java
b/src/jalview/gui/Help.java
index
ee91713
..
e201636
100644
(file)
--- a/
src/jalview/gui/Help.java
+++ b/
src/jalview/gui/Help.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IProgressIndicator.java
b/src/jalview/gui/IProgressIndicator.java
index
5bbf9f6
..
6ca5a07
100644
(file)
--- a/
src/jalview/gui/IProgressIndicator.java
+++ b/
src/jalview/gui/IProgressIndicator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IProgressIndicatorHandler.java
b/src/jalview/gui/IProgressIndicatorHandler.java
index
64d93b4
..
78ce757
100644
(file)
--- a/
src/jalview/gui/IProgressIndicatorHandler.java
+++ b/
src/jalview/gui/IProgressIndicatorHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdCanvas.java
b/src/jalview/gui/IdCanvas.java
index
d7a8f00
..
2265235
100755
(executable)
--- a/
src/jalview/gui/IdCanvas.java
+++ b/
src/jalview/gui/IdCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdPanel.java
b/src/jalview/gui/IdPanel.java
index
b5569c3
..
d425354
100755
(executable)
--- a/
src/jalview/gui/IdPanel.java
+++ b/
src/jalview/gui/IdPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdwidthAdjuster.java
b/src/jalview/gui/IdwidthAdjuster.java
index
f26dfa7
..
27eb7ee
100755
(executable)
--- a/
src/jalview/gui/IdwidthAdjuster.java
+++ b/
src/jalview/gui/IdwidthAdjuster.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JDatabaseTree.java
b/src/jalview/gui/JDatabaseTree.java
index
0ee8008
..
1826407
100644
(file)
--- a/
src/jalview/gui/JDatabaseTree.java
+++ b/
src/jalview/gui/JDatabaseTree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Jalview2XML.java
b/src/jalview/gui/Jalview2XML.java
index
389a6a3
..
f8dd2fe
100644
(file)
--- a/
src/jalview/gui/Jalview2XML.java
+++ b/
src/jalview/gui/Jalview2XML.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Jalview2XML_V1.java
b/src/jalview/gui/Jalview2XML_V1.java
index
b9d4391
..
903208a
100755
(executable)
--- a/
src/jalview/gui/Jalview2XML_V1.java
+++ b/
src/jalview/gui/Jalview2XML_V1.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewAppender.java
b/src/jalview/gui/JalviewAppender.java
index
99aa5b8
..
8ee2d8b
100644
(file)
--- a/
src/jalview/gui/JalviewAppender.java
+++ b/
src/jalview/gui/JalviewAppender.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewChangeSupport.java
b/src/jalview/gui/JalviewChangeSupport.java
index
63cb46c
..
3e11e94
100644
(file)
--- a/
src/jalview/gui/JalviewChangeSupport.java
+++ b/
src/jalview/gui/JalviewChangeSupport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewChimeraBindingModel.java
b/src/jalview/gui/JalviewChimeraBindingModel.java
index
4637f07
..
cdc0b91
100644
(file)
--- a/
src/jalview/gui/JalviewChimeraBindingModel.java
+++ b/
src/jalview/gui/JalviewChimeraBindingModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewDialog.java
b/src/jalview/gui/JalviewDialog.java
index
895abcb
..
beee74f
100644
(file)
--- a/
src/jalview/gui/JalviewDialog.java
+++ b/
src/jalview/gui/JalviewDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JvSwingUtils.java
b/src/jalview/gui/JvSwingUtils.java
index
7392488
..
b5dc5c0
100644
(file)
--- a/
src/jalview/gui/JvSwingUtils.java
+++ b/
src/jalview/gui/JvSwingUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/MenuChooser.java
b/src/jalview/gui/MenuChooser.java
index
4810279
..
24c295f
100644
(file)
--- a/
src/jalview/gui/MenuChooser.java
+++ b/
src/jalview/gui/MenuChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OOMWarning.java
b/src/jalview/gui/OOMWarning.java
index
e37dd07
..
9549233
100644
(file)
--- a/
src/jalview/gui/OOMWarning.java
+++ b/
src/jalview/gui/OOMWarning.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OptsAndParamsPage.java
b/src/jalview/gui/OptsAndParamsPage.java
index
d2efc7e
..
6f9e4b1
100644
(file)
--- a/
src/jalview/gui/OptsAndParamsPage.java
+++ b/
src/jalview/gui/OptsAndParamsPage.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OptsParametersContainerI.java
b/src/jalview/gui/OptsParametersContainerI.java
index
16b57e6
..
6925397
100644
(file)
--- a/
src/jalview/gui/OptsParametersContainerI.java
+++ b/
src/jalview/gui/OptsParametersContainerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OverviewPanel.java
b/src/jalview/gui/OverviewPanel.java
index
9397ceb
..
a0fcf55
100755
(executable)
--- a/
src/jalview/gui/OverviewPanel.java
+++ b/
src/jalview/gui/OverviewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PCAPanel.java
b/src/jalview/gui/PCAPanel.java
index
57a14a0
..
5ad4901
100644
(file)
--- a/
src/jalview/gui/PCAPanel.java
+++ b/
src/jalview/gui/PCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PDBSearchPanel.java
b/src/jalview/gui/PDBSearchPanel.java
index
cef9ddd
..
11837b6
100644
(file)
--- a/
src/jalview/gui/PDBSearchPanel.java
+++ b/
src/jalview/gui/PDBSearchPanel.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
diff --git
a/src/jalview/gui/PaintRefresher.java
b/src/jalview/gui/PaintRefresher.java
index
1b90d82
..
3b0b95b
100755
(executable)
--- a/
src/jalview/gui/PaintRefresher.java
+++ b/
src/jalview/gui/PaintRefresher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PairwiseAlignPanel.java
b/src/jalview/gui/PairwiseAlignPanel.java
index
294bb9d
..
ee89737
100755
(executable)
--- a/
src/jalview/gui/PairwiseAlignPanel.java
+++ b/
src/jalview/gui/PairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PopupMenu.java
b/src/jalview/gui/PopupMenu.java
index
d344c0c
..
9b206bd
100644
(file)
--- a/
src/jalview/gui/PopupMenu.java
+++ b/
src/jalview/gui/PopupMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Preferences.java
b/src/jalview/gui/Preferences.java
index
78a21c8
..
bcef6cc
100755
(executable)
--- a/
src/jalview/gui/Preferences.java
+++ b/
src/jalview/gui/Preferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ProgressBar.java
b/src/jalview/gui/ProgressBar.java
index
f6710bc
..
1d499ee
100644
(file)
--- a/
src/jalview/gui/ProgressBar.java
+++ b/
src/jalview/gui/ProgressBar.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PromptUserConfig.java
b/src/jalview/gui/PromptUserConfig.java
index
f802149
..
0e9f0e4
100644
(file)
--- a/
src/jalview/gui/PromptUserConfig.java
+++ b/
src/jalview/gui/PromptUserConfig.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RedundancyPanel.java
b/src/jalview/gui/RedundancyPanel.java
index
4998bcc
..
69a7ec1
100755
(executable)
--- a/
src/jalview/gui/RedundancyPanel.java
+++ b/
src/jalview/gui/RedundancyPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RestInputParamEditDialog.java
b/src/jalview/gui/RestInputParamEditDialog.java
index
80dc8fb
..
71b4e3e
100644
(file)
--- a/
src/jalview/gui/RestInputParamEditDialog.java
+++ b/
src/jalview/gui/RestInputParamEditDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RestServiceEditorPane.java
b/src/jalview/gui/RestServiceEditorPane.java
index
4e42bf0
..
eabcafa
100644
(file)
--- a/
src/jalview/gui/RestServiceEditorPane.java
+++ b/
src/jalview/gui/RestServiceEditorPane.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RotatableCanvas.java
b/src/jalview/gui/RotatableCanvas.java
index
441fa5f
..
092080e
100755
(executable)
--- a/
src/jalview/gui/RotatableCanvas.java
+++ b/
src/jalview/gui/RotatableCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SVGOptions.java
b/src/jalview/gui/SVGOptions.java
index
21319eb
..
0ab6c26
100644
(file)
--- a/
src/jalview/gui/SVGOptions.java
+++ b/
src/jalview/gui/SVGOptions.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ScalePanel.java
b/src/jalview/gui/ScalePanel.java
index
21db011
..
d8793ee
100755
(executable)
--- a/
src/jalview/gui/ScalePanel.java
+++ b/
src/jalview/gui/ScalePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SeqCanvas.java
b/src/jalview/gui/SeqCanvas.java
index
76dd53a
..
7c221b8
100755
(executable)
--- a/
src/jalview/gui/SeqCanvas.java
+++ b/
src/jalview/gui/SeqCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SeqPanel.java
b/src/jalview/gui/SeqPanel.java
index
52c3c46
..
d1fb7dc
100644
(file)
--- a/
src/jalview/gui/SeqPanel.java
+++ b/
src/jalview/gui/SeqPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SequenceFetcher.java
b/src/jalview/gui/SequenceFetcher.java
index
9f92c42
..
1b1e765
100755
(executable)
--- a/
src/jalview/gui/SequenceFetcher.java
+++ b/
src/jalview/gui/SequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SequenceRenderer.java
b/src/jalview/gui/SequenceRenderer.java
index
8c4ead8
..
0641f7e
100755
(executable)
--- a/
src/jalview/gui/SequenceRenderer.java
+++ b/
src/jalview/gui/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SliderPanel.java
b/src/jalview/gui/SliderPanel.java
index
02a8ed7
..
8e1ae7a
100755
(executable)
--- a/
src/jalview/gui/SliderPanel.java
+++ b/
src/jalview/gui/SliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SplashScreen.java
b/src/jalview/gui/SplashScreen.java
index
9c810d0
..
c133971
100755
(executable)
--- a/
src/jalview/gui/SplashScreen.java
+++ b/
src/jalview/gui/SplashScreen.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SplitFrame.java
b/src/jalview/gui/SplitFrame.java
index
a6c7bb8
..
2929a00
100644
(file)
--- a/
src/jalview/gui/SplitFrame.java
+++ b/
src/jalview/gui/SplitFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/StructureChooser.java
b/src/jalview/gui/StructureChooser.java
index
63a8654
..
6e2ceff
100644
(file)
--- a/
src/jalview/gui/StructureChooser.java
+++ b/
src/jalview/gui/StructureChooser.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
diff --git
a/src/jalview/gui/StructureViewer.java
b/src/jalview/gui/StructureViewer.java
index
df5a6c4
..
9a13b5e
100644
(file)
--- a/
src/jalview/gui/StructureViewer.java
+++ b/
src/jalview/gui/StructureViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/StructureViewerBase.java
b/src/jalview/gui/StructureViewerBase.java
index
8146237
..
aeac87b
100644
(file)
--- a/
src/jalview/gui/StructureViewerBase.java
+++ b/
src/jalview/gui/StructureViewerBase.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TextColourChooser.java
b/src/jalview/gui/TextColourChooser.java
index
fc01404
..
e7a182f
100644
(file)
--- a/
src/jalview/gui/TextColourChooser.java
+++ b/
src/jalview/gui/TextColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TreeCanvas.java
b/src/jalview/gui/TreeCanvas.java
index
f590c2e
..
dfc46b5
100755
(executable)
--- a/
src/jalview/gui/TreeCanvas.java
+++ b/
src/jalview/gui/TreeCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TreePanel.java
b/src/jalview/gui/TreePanel.java
index
c0b0c68
..
44f9fef
100755
(executable)
--- a/
src/jalview/gui/TreePanel.java
+++ b/
src/jalview/gui/TreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/UserDefinedColours.java
b/src/jalview/gui/UserDefinedColours.java
index
1e85e55
..
1a824df
100755
(executable)
--- a/
src/jalview/gui/UserDefinedColours.java
+++ b/
src/jalview/gui/UserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/UserQuestionnaireCheck.java
b/src/jalview/gui/UserQuestionnaireCheck.java
index
c286935
..
c6ed5c5
100644
(file)
--- a/
src/jalview/gui/UserQuestionnaireCheck.java
+++ b/
src/jalview/gui/UserQuestionnaireCheck.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/VamsasApplication.java
b/src/jalview/gui/VamsasApplication.java
index
4630fd1
..
20a622d
100644
(file)
--- a/
src/jalview/gui/VamsasApplication.java
+++ b/
src/jalview/gui/VamsasApplication.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ViewSelectionMenu.java
b/src/jalview/gui/ViewSelectionMenu.java
index
d906c6d
..
089d521
100644
(file)
--- a/
src/jalview/gui/ViewSelectionMenu.java
+++ b/
src/jalview/gui/ViewSelectionMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WebserviceInfo.java
b/src/jalview/gui/WebserviceInfo.java
index
82257ff
..
e3e7cd6
100644
(file)
--- a/
src/jalview/gui/WebserviceInfo.java
+++ b/
src/jalview/gui/WebserviceInfo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsJobParameters.java
b/src/jalview/gui/WsJobParameters.java
index
b3e40c1
..
79fa122
100644
(file)
--- a/
src/jalview/gui/WsJobParameters.java
+++ b/
src/jalview/gui/WsJobParameters.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsParamSetManager.java
b/src/jalview/gui/WsParamSetManager.java
index
687c9f3
..
ae796f3
100644
(file)
--- a/
src/jalview/gui/WsParamSetManager.java
+++ b/
src/jalview/gui/WsParamSetManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsPreferences.java
b/src/jalview/gui/WsPreferences.java
index
fa29078
..
2023407
100644
(file)
--- a/
src/jalview/gui/WsPreferences.java
+++ b/
src/jalview/gui/WsPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/httpserver/AbstractRequestHandler.java
b/src/jalview/httpserver/AbstractRequestHandler.java
index
64ac2d1
..
4063206
100644
(file)
--- a/
src/jalview/httpserver/AbstractRequestHandler.java
+++ b/
src/jalview/httpserver/AbstractRequestHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/httpserver/HttpServer.java
b/src/jalview/httpserver/HttpServer.java
index
1f00df4
..
83f1519
100644
(file)
--- a/
src/jalview/httpserver/HttpServer.java
+++ b/
src/jalview/httpserver/HttpServer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AMSAFile.java
b/src/jalview/io/AMSAFile.java
index
d8cb64f
..
8614a7f
100644
(file)
--- a/
src/jalview/io/AMSAFile.java
+++ b/
src/jalview/io/AMSAFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AlignFile.java
b/src/jalview/io/AlignFile.java
index
e5c8e04
..
26932ac
100755
(executable)
--- a/
src/jalview/io/AlignFile.java
+++ b/
src/jalview/io/AlignFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AlignmentProperties.java
b/src/jalview/io/AlignmentProperties.java
index
bef3795
..
2283ad8
100644
(file)
--- a/
src/jalview/io/AlignmentProperties.java
+++ b/
src/jalview/io/AlignmentProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AnnotationFile.java
b/src/jalview/io/AnnotationFile.java
index
2872a77
..
11fe96a
100755
(executable)
--- a/
src/jalview/io/AnnotationFile.java
+++ b/
src/jalview/io/AnnotationFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AppletFormatAdapter.java
b/src/jalview/io/AppletFormatAdapter.java
index
00d6d2f
..
2f436e4
100755
(executable)
--- a/
src/jalview/io/AppletFormatAdapter.java
+++ b/
src/jalview/io/AppletFormatAdapter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/BLCFile.java
b/src/jalview/io/BLCFile.java
index
071e814
..
ce95236
100755
(executable)
--- a/
src/jalview/io/BLCFile.java
+++ b/
src/jalview/io/BLCFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/BioJsHTMLOutput.java
b/src/jalview/io/BioJsHTMLOutput.java
index
47f285c
..
a1679c3
100644
(file)
--- a/
src/jalview/io/BioJsHTMLOutput.java
+++ b/
src/jalview/io/BioJsHTMLOutput.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/ClansFile.java
b/src/jalview/io/ClansFile.java
index
7e87c1c
..
bd2f4bf
100644
(file)
--- a/
src/jalview/io/ClansFile.java
+++ b/
src/jalview/io/ClansFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/ClustalFile.java
b/src/jalview/io/ClustalFile.java
index
5dd0e40
..
41fe12b
100755
(executable)
--- a/
src/jalview/io/ClustalFile.java
+++ b/
src/jalview/io/ClustalFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/DBRefFile.java
b/src/jalview/io/DBRefFile.java
index
6aa5994
..
909e552
100644
(file)
--- a/
src/jalview/io/DBRefFile.java
+++ b/
src/jalview/io/DBRefFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FastaFile.java
b/src/jalview/io/FastaFile.java
index
2801ac4
..
7585758
100755
(executable)
--- a/
src/jalview/io/FastaFile.java
+++ b/
src/jalview/io/FastaFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FeaturesFile.java
b/src/jalview/io/FeaturesFile.java
index
f48ff07
..
2fef2ae
100755
(executable)
--- a/
src/jalview/io/FeaturesFile.java
+++ b/
src/jalview/io/FeaturesFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FileLoader.java
b/src/jalview/io/FileLoader.java
index
9ac56b5
..
ce01843
100755
(executable)
--- a/
src/jalview/io/FileLoader.java
+++ b/
src/jalview/io/FileLoader.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FileParse.java
b/src/jalview/io/FileParse.java
index
4526eba
..
a630490
100755
(executable)
--- a/
src/jalview/io/FileParse.java
+++ b/
src/jalview/io/FileParse.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FormatAdapter.java
b/src/jalview/io/FormatAdapter.java
index
50391d8
..
8e5e706
100755
(executable)
--- a/
src/jalview/io/FormatAdapter.java
+++ b/
src/jalview/io/FormatAdapter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/Gff3File.java
b/src/jalview/io/Gff3File.java
index
4d8ea94
..
8896873
100644
(file)
--- a/
src/jalview/io/Gff3File.java
+++ b/
src/jalview/io/Gff3File.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/HTMLOutput.java
b/src/jalview/io/HTMLOutput.java
index
95864c3
..
653adb5
100755
(executable)
--- a/
src/jalview/io/HTMLOutput.java
+++ b/
src/jalview/io/HTMLOutput.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/HtmlFile.java
b/src/jalview/io/HtmlFile.java
index
0cb7c00
..
73d30dc
100644
(file)
--- a/
src/jalview/io/HtmlFile.java
+++ b/
src/jalview/io/HtmlFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/HtmlSvgOutput.java
b/src/jalview/io/HtmlSvgOutput.java
index
ea32985
..
9f5f511
100644
(file)
--- a/
src/jalview/io/HtmlSvgOutput.java
+++ b/
src/jalview/io/HtmlSvgOutput.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/IdentifyFile.java
b/src/jalview/io/IdentifyFile.java
index
82916f9
..
b062e5d
100755
(executable)
--- a/
src/jalview/io/IdentifyFile.java
+++ b/
src/jalview/io/IdentifyFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/InputStreamParser.java
b/src/jalview/io/InputStreamParser.java
index
c12d2a3
..
9bd98a7
100644
(file)
--- a/
src/jalview/io/InputStreamParser.java
+++ b/
src/jalview/io/InputStreamParser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JPredFile.java
b/src/jalview/io/JPredFile.java
index
5bc615e
..
591c37c
100755
(executable)
--- a/
src/jalview/io/JPredFile.java
+++ b/
src/jalview/io/JPredFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JSONFile.java
b/src/jalview/io/JSONFile.java
index
8e87953
..
9402562
100644
(file)
--- a/
src/jalview/io/JSONFile.java
+++ b/
src/jalview/io/JSONFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileChooser.java
b/src/jalview/io/JalviewFileChooser.java
index
951b998
..
0bdd705
100755
(executable)
--- a/
src/jalview/io/JalviewFileChooser.java
+++ b/
src/jalview/io/JalviewFileChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileFilter.java
b/src/jalview/io/JalviewFileFilter.java
index
8d6038b
..
add280e
100755
(executable)
--- a/
src/jalview/io/JalviewFileFilter.java
+++ b/
src/jalview/io/JalviewFileFilter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileView.java
b/src/jalview/io/JalviewFileView.java
index
b7f3201
..
5d4c224
100755
(executable)
--- a/
src/jalview/io/JalviewFileView.java
+++ b/
src/jalview/io/JalviewFileView.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JnetAnnotationMaker.java
b/src/jalview/io/JnetAnnotationMaker.java
index
5192454
..
a6779a6
100755
(executable)
--- a/
src/jalview/io/JnetAnnotationMaker.java
+++ b/
src/jalview/io/JnetAnnotationMaker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/MSFfile.java
b/src/jalview/io/MSFfile.java
index
67ace7c
..
47a1151
100755
(executable)
--- a/
src/jalview/io/MSFfile.java
+++ b/
src/jalview/io/MSFfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/MatrixFile.java
b/src/jalview/io/MatrixFile.java
index
b8f46f2
..
ae922e9
100644
(file)
--- a/
src/jalview/io/MatrixFile.java
+++ b/
src/jalview/io/MatrixFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/ModellerDescription.java
b/src/jalview/io/ModellerDescription.java
index
a7a1efa
..
a24afff
100755
(executable)
--- a/
src/jalview/io/ModellerDescription.java
+++ b/
src/jalview/io/ModellerDescription.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/NewickFile.java
b/src/jalview/io/NewickFile.java
index
800d51a
..
93bd27d
100755
(executable)
--- a/
src/jalview/io/NewickFile.java
+++ b/
src/jalview/io/NewickFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PIRFile.java
b/src/jalview/io/PIRFile.java
index
4b3d02e
..
449a3c2
100755
(executable)
--- a/
src/jalview/io/PIRFile.java
+++ b/
src/jalview/io/PIRFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PfamFile.java
b/src/jalview/io/PfamFile.java
index
e696609
..
f0946df
100755
(executable)
--- a/
src/jalview/io/PfamFile.java
+++ b/
src/jalview/io/PfamFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PhylipFile.java
b/src/jalview/io/PhylipFile.java
index
656e103
..
f48f1c6
100644
(file)
--- a/
src/jalview/io/PhylipFile.java
+++ b/
src/jalview/io/PhylipFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PileUpfile.java
b/src/jalview/io/PileUpfile.java
index
e826687
..
c8ad2fa
100755
(executable)
--- a/
src/jalview/io/PileUpfile.java
+++ b/
src/jalview/io/PileUpfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/RnamlFile.java
b/src/jalview/io/RnamlFile.java
index
2948c92
..
0cd51fc
100644
(file)
--- a/
src/jalview/io/RnamlFile.java
+++ b/
src/jalview/io/RnamlFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/SequenceAnnotationReport.java
b/src/jalview/io/SequenceAnnotationReport.java
index
8c4a332
..
ffc0be3
100644
(file)
--- a/
src/jalview/io/SequenceAnnotationReport.java
+++ b/
src/jalview/io/SequenceAnnotationReport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/SimpleBlastFile.java
b/src/jalview/io/SimpleBlastFile.java
index
db5f8a9
..
4fa0972
100644
(file)
--- a/
src/jalview/io/SimpleBlastFile.java
+++ b/
src/jalview/io/SimpleBlastFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/StockholmFile.java
b/src/jalview/io/StockholmFile.java
index
0274abc
..
2f5263b
100644
(file)
--- a/
src/jalview/io/StockholmFile.java
+++ b/
src/jalview/io/StockholmFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/TCoffeeScoreFile.java
b/src/jalview/io/TCoffeeScoreFile.java
index
72aa99b
..
ae023dc
100644
(file)
--- a/
src/jalview/io/TCoffeeScoreFile.java
+++ b/
src/jalview/io/TCoffeeScoreFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/VamsasAppDatastore.java
b/src/jalview/io/VamsasAppDatastore.java
index
d580129
..
4e22498
100644
(file)
--- a/
src/jalview/io/VamsasAppDatastore.java
+++ b/
src/jalview/io/VamsasAppDatastore.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/WSWUBlastClient.java
b/src/jalview/io/WSWUBlastClient.java
index
1e7cc40
..
d94d021
100755
(executable)
--- a/
src/jalview/io/WSWUBlastClient.java
+++ b/
src/jalview/io/WSWUBlastClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/DataProvider.java
b/src/jalview/io/packed/DataProvider.java
index
65a796b
..
3902b0e
100644
(file)
--- a/
src/jalview/io/packed/DataProvider.java
+++ b/
src/jalview/io/packed/DataProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/JalviewDataset.java
b/src/jalview/io/packed/JalviewDataset.java
index
1906fff
..
ad5bb24
100644
(file)
--- a/
src/jalview/io/packed/JalviewDataset.java
+++ b/
src/jalview/io/packed/JalviewDataset.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/ParsePackedSet.java
b/src/jalview/io/packed/ParsePackedSet.java
index
4de8a66
..
1141b71
100644
(file)
--- a/
src/jalview/io/packed/ParsePackedSet.java
+++ b/
src/jalview/io/packed/ParsePackedSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/SimpleDataProvider.java
b/src/jalview/io/packed/SimpleDataProvider.java
index
ac036ca
..
38a5be9
100644
(file)
--- a/
src/jalview/io/packed/SimpleDataProvider.java
+++ b/
src/jalview/io/packed/SimpleDataProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Datasetsequence.java
b/src/jalview/io/vamsas/Datasetsequence.java
index
297b854
..
0b36610
100644
(file)
--- a/
src/jalview/io/vamsas/Datasetsequence.java
+++ b/
src/jalview/io/vamsas/Datasetsequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/DatastoreItem.java
b/src/jalview/io/vamsas/DatastoreItem.java
index
215f2d5
..
de82beb
100644
(file)
--- a/
src/jalview/io/vamsas/DatastoreItem.java
+++ b/
src/jalview/io/vamsas/DatastoreItem.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/DatastoreRegistry.java
b/src/jalview/io/vamsas/DatastoreRegistry.java
index
9ecd36c
..
b68a726
100644
(file)
--- a/
src/jalview/io/vamsas/DatastoreRegistry.java
+++ b/
src/jalview/io/vamsas/DatastoreRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Dbref.java
b/src/jalview/io/vamsas/Dbref.java
index
e7f6b3c
..
1d82760
100644
(file)
--- a/
src/jalview/io/vamsas/Dbref.java
+++ b/
src/jalview/io/vamsas/Dbref.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/LocalDocSyncObject.java
b/src/jalview/io/vamsas/LocalDocSyncObject.java
index
67511dc
..
0290abf
100644
(file)
--- a/
src/jalview/io/vamsas/LocalDocSyncObject.java
+++ b/
src/jalview/io/vamsas/LocalDocSyncObject.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Rangetype.java
b/src/jalview/io/vamsas/Rangetype.java
index
d94d86c
..
39359d4
100644
(file)
--- a/
src/jalview/io/vamsas/Rangetype.java
+++ b/
src/jalview/io/vamsas/Rangetype.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Sequencefeature.java
b/src/jalview/io/vamsas/Sequencefeature.java
index
0f9a664
..
8888c1c
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencefeature.java
+++ b/
src/jalview/io/vamsas/Sequencefeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Sequencemapping.java
b/src/jalview/io/vamsas/Sequencemapping.java
index
6dbbd6c
..
92306ea
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencemapping.java
+++ b/
src/jalview/io/vamsas/Sequencemapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Tree.java
b/src/jalview/io/vamsas/Tree.java
index
4d232ee
..
c321ad1
100644
(file)
--- a/
src/jalview/io/vamsas/Tree.java
+++ b/
src/jalview/io/vamsas/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JSFunctionExec.java
b/src/jalview/javascript/JSFunctionExec.java
index
6202cba
..
26c7d39
100644
(file)
--- a/
src/jalview/javascript/JSFunctionExec.java
+++ b/
src/jalview/javascript/JSFunctionExec.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JalviewLiteJsApi.java
b/src/jalview/javascript/JalviewLiteJsApi.java
index
1de9303
..
6d8ad0a
100644
(file)
--- a/
src/jalview/javascript/JalviewLiteJsApi.java
+++ b/
src/jalview/javascript/JalviewLiteJsApi.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JsCallBack.java
b/src/jalview/javascript/JsCallBack.java
index
505f80d
..
a723ec2
100644
(file)
--- a/
src/jalview/javascript/JsCallBack.java
+++ b/
src/jalview/javascript/JsCallBack.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JsSelectionSender.java
b/src/jalview/javascript/JsSelectionSender.java
index
cc293b1
..
57da5b4
100644
(file)
--- a/
src/jalview/javascript/JsSelectionSender.java
+++ b/
src/jalview/javascript/JsSelectionSender.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/MouseOverListener.java
b/src/jalview/javascript/MouseOverListener.java
index
26d582e
..
2b228da
100644
(file)
--- a/
src/jalview/javascript/MouseOverListener.java
+++ b/
src/jalview/javascript/MouseOverListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/MouseOverStructureListener.java
b/src/jalview/javascript/MouseOverStructureListener.java
index
b08aeca
..
e25f47c
100644
(file)
--- a/
src/jalview/javascript/MouseOverStructureListener.java
+++ b/
src/jalview/javascript/MouseOverStructureListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GAlignExportSettings.java
b/src/jalview/jbgui/GAlignExportSettings.java
index
fcc38fb
..
282055b
100644
(file)
--- a/
src/jalview/jbgui/GAlignExportSettings.java
+++ b/
src/jalview/jbgui/GAlignExportSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GAlignFrame.java
b/src/jalview/jbgui/GAlignFrame.java
index
2e361c7
..
2a77a57
100755
(executable)
--- a/
src/jalview/jbgui/GAlignFrame.java
+++ b/
src/jalview/jbgui/GAlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GAlignmentPanel.java
b/src/jalview/jbgui/GAlignmentPanel.java
index
efbc6af
..
a6217b9
100755
(executable)
--- a/
src/jalview/jbgui/GAlignmentPanel.java
+++ b/
src/jalview/jbgui/GAlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
b/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
index
ce704fe
..
14f5c73
100644
(file)
--- a/
src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
+++ b/
src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GCutAndPasteTransfer.java
b/src/jalview/jbgui/GCutAndPasteTransfer.java
index
10f4166
..
f1c8e12
100755
(executable)
--- a/
src/jalview/jbgui/GCutAndPasteTransfer.java
+++ b/
src/jalview/jbgui/GCutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GDasSourceBrowser.java
b/src/jalview/jbgui/GDasSourceBrowser.java
index
bbff0ab
..
c2b1421
100755
(executable)
--- a/
src/jalview/jbgui/GDasSourceBrowser.java
+++ b/
src/jalview/jbgui/GDasSourceBrowser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GDesktop.java
b/src/jalview/jbgui/GDesktop.java
index
8fd5921
..
9602b64
100755
(executable)
--- a/
src/jalview/jbgui/GDesktop.java
+++ b/
src/jalview/jbgui/GDesktop.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GFinder.java
b/src/jalview/jbgui/GFinder.java
index
af1760f
..
8e025ea
100755
(executable)
--- a/
src/jalview/jbgui/GFinder.java
+++ b/
src/jalview/jbgui/GFinder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GFontChooser.java
b/src/jalview/jbgui/GFontChooser.java
index
d4b8906
..
fe55c96
100755
(executable)
--- a/
src/jalview/jbgui/GFontChooser.java
+++ b/
src/jalview/jbgui/GFontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPCAPanel.java
b/src/jalview/jbgui/GPCAPanel.java
index
f57845d
..
e52635c
100755
(executable)
--- a/
src/jalview/jbgui/GPCAPanel.java
+++ b/
src/jalview/jbgui/GPCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPairwiseAlignPanel.java
b/src/jalview/jbgui/GPairwiseAlignPanel.java
index
e23060f
..
e658c19
100755
(executable)
--- a/
src/jalview/jbgui/GPairwiseAlignPanel.java
+++ b/
src/jalview/jbgui/GPairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPreferences.java
b/src/jalview/jbgui/GPreferences.java
index
3458347
..
b3939f6
100755
(executable)
--- a/
src/jalview/jbgui/GPreferences.java
+++ b/
src/jalview/jbgui/GPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GRestInputParamEditDialog.java
b/src/jalview/jbgui/GRestInputParamEditDialog.java
index
b0f0480
..
dbf1224
100644
(file)
--- a/
src/jalview/jbgui/GRestInputParamEditDialog.java
+++ b/
src/jalview/jbgui/GRestInputParamEditDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GRestServiceEditorPane.java
b/src/jalview/jbgui/GRestServiceEditorPane.java
index
c233f63
..
7651b73
100644
(file)
--- a/
src/jalview/jbgui/GRestServiceEditorPane.java
+++ b/
src/jalview/jbgui/GRestServiceEditorPane.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GRnaStructureViewer.java
b/src/jalview/jbgui/GRnaStructureViewer.java
index
ad84901
..
f4595a8
100644
(file)
--- a/
src/jalview/jbgui/GRnaStructureViewer.java
+++ b/
src/jalview/jbgui/GRnaStructureViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GSequenceLink.java
b/src/jalview/jbgui/GSequenceLink.java
index
bdd9908
..
86a3a48
100755
(executable)
--- a/
src/jalview/jbgui/GSequenceLink.java
+++ b/
src/jalview/jbgui/GSequenceLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GSliderPanel.java
b/src/jalview/jbgui/GSliderPanel.java
index
588f0cf
..
eedf92b
100755
(executable)
--- a/
src/jalview/jbgui/GSliderPanel.java
+++ b/
src/jalview/jbgui/GSliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GSplitFrame.java
b/src/jalview/jbgui/GSplitFrame.java
index
f06d8f0
..
26a404b
100644
(file)
--- a/
src/jalview/jbgui/GSplitFrame.java
+++ b/
src/jalview/jbgui/GSplitFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GStructureViewer.java
b/src/jalview/jbgui/GStructureViewer.java
index
ac2202c
..
8c1bcb0
100644
(file)
--- a/
src/jalview/jbgui/GStructureViewer.java
+++ b/
src/jalview/jbgui/GStructureViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GTreePanel.java
b/src/jalview/jbgui/GTreePanel.java
index
6130204
..
9b6e6a5
100755
(executable)
--- a/
src/jalview/jbgui/GTreePanel.java
+++ b/
src/jalview/jbgui/GTreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GUserDefinedColours.java
b/src/jalview/jbgui/GUserDefinedColours.java
index
d54e98a
..
7947fcc
100755
(executable)
--- a/
src/jalview/jbgui/GUserDefinedColours.java
+++ b/
src/jalview/jbgui/GUserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GWebserviceInfo.java
b/src/jalview/jbgui/GWebserviceInfo.java
index
f64568a
..
5f78579
100755
(executable)
--- a/
src/jalview/jbgui/GWebserviceInfo.java
+++ b/
src/jalview/jbgui/GWebserviceInfo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GWsPreferences.java
b/src/jalview/jbgui/GWsPreferences.java
index
98b6c73
..
de2bb5e
100644
(file)
--- a/
src/jalview/jbgui/GWsPreferences.java
+++ b/
src/jalview/jbgui/GWsPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/PDBDocFieldPreferences.java
b/src/jalview/jbgui/PDBDocFieldPreferences.java
index
8c3aab6
..
e65f1ad
100644
(file)
--- a/
src/jalview/jbgui/PDBDocFieldPreferences.java
+++ b/
src/jalview/jbgui/PDBDocFieldPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/json/binding/biojs/BioJSReleasePojo.java
b/src/jalview/json/binding/biojs/BioJSReleasePojo.java
index
c60cea2
..
56098c7
100644
(file)
--- a/
src/jalview/json/binding/biojs/BioJSReleasePojo.java
+++ b/
src/jalview/json/binding/biojs/BioJSReleasePojo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/json/binding/biojs/BioJSRepositoryPojo.java
b/src/jalview/json/binding/biojs/BioJSRepositoryPojo.java
index
cafe762
..
3b2fe9a
100644
(file)
--- a/
src/jalview/json/binding/biojs/BioJSRepositoryPojo.java
+++ b/
src/jalview/json/binding/biojs/BioJSRepositoryPojo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/json/binding/biojson/v1/AlignmentAnnotationPojo.java
b/src/jalview/json/binding/biojson/v1/AlignmentAnnotationPojo.java
index
a8a3218
..
9435265
100644
(file)
--- a/
src/jalview/json/binding/biojson/v1/AlignmentAnnotationPojo.java
+++ b/
src/jalview/json/binding/biojson/v1/AlignmentAnnotationPojo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/json/binding/biojson/v1/AlignmentPojo.java
b/src/jalview/json/binding/biojson/v1/AlignmentPojo.java
index
7b78313
..
ccf529e
100644
(file)
--- a/
src/jalview/json/binding/biojson/v1/AlignmentPojo.java
+++ b/
src/jalview/json/binding/biojson/v1/AlignmentPojo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/json/binding/biojson/v1/AnnotationDisplaySettingPojo.java
b/src/jalview/json/binding/biojson/v1/AnnotationDisplaySettingPojo.java
index
d493bf2
..
3554b66
100644
(file)
--- a/
src/jalview/json/binding/biojson/v1/AnnotationDisplaySettingPojo.java
+++ b/
src/jalview/json/binding/biojson/v1/AnnotationDisplaySettingPojo.java
@@
-1,6
+1,6
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
diff --git
a/src/jalview/json/binding/biojson/v1/AnnotationPojo.java
b/src/jalview/json/binding/biojson/v1/AnnotationPojo.java
index
54effda
..
77b4b53
100644
(file)
--- a/
src/jalview/json/binding/biojson/v1/AnnotationPojo.java
+++ b/
src/jalview/json/binding/biojson/v1/AnnotationPojo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/json/binding/biojson/v1/ColourSchemeMapper.java
b/src/jalview/json/binding/biojson/v1/ColourSchemeMapper.java
index
b3422ab
..
786d80e
100644
(file)
--- a/
src/jalview/json/binding/biojson/v1/ColourSchemeMapper.java
+++ b/
src/jalview/json/binding/biojson/v1/ColourSchemeMapper.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
diff --git
a/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
b/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
index
318eeac
..
a87356e
100644
(file)
--- a/
src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
+++ b/
src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
b/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
index
f64ec92
..
3861adb
100644
(file)
--- a/
src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
+++ b/
src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/json/binding/biojson/v1/SequencePojo.java
b/src/jalview/json/binding/biojson/v1/SequencePojo.java
index
59c875f
..
bc1d118
100644
(file)
--- a/
src/jalview/json/binding/biojson/v1/SequencePojo.java
+++ b/
src/jalview/json/binding/biojson/v1/SequencePojo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/math/AlignmentDimension.java
b/src/jalview/math/AlignmentDimension.java
index
f6198b4
..
894c4bb
100644
(file)
--- a/
src/jalview/math/AlignmentDimension.java
+++ b/
src/jalview/math/AlignmentDimension.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/math/Matrix.java
b/src/jalview/math/Matrix.java
index
189ec51
..
4a1571b
100755
(executable)
--- a/
src/jalview/math/Matrix.java
+++ b/
src/jalview/math/Matrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/math/RotatableMatrix.java
b/src/jalview/math/RotatableMatrix.java
index
075ac0e
..
99f0c87
100755
(executable)
--- a/
src/jalview/math/RotatableMatrix.java
+++ b/
src/jalview/math/RotatableMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/renderer/AnnotationRenderer.java
b/src/jalview/renderer/AnnotationRenderer.java
index
9610a79
..
bc47fc6
100644
(file)
--- a/
src/jalview/renderer/AnnotationRenderer.java
+++ b/
src/jalview/renderer/AnnotationRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/renderer/AwtRenderPanelI.java
b/src/jalview/renderer/AwtRenderPanelI.java
index
dd18bd6
..
3e83b37
100644
(file)
--- a/
src/jalview/renderer/AwtRenderPanelI.java
+++ b/
src/jalview/renderer/AwtRenderPanelI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/renderer/seqfeatures/FeatureRenderer.java
b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
index
d05d158
..
56c5c07
100644
(file)
--- a/
src/jalview/renderer/seqfeatures/FeatureRenderer.java
+++ b/
src/jalview/renderer/seqfeatures/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/rest/RestHandler.java
b/src/jalview/rest/RestHandler.java
index
76cf184
..
0e84b9a
100644
(file)
--- a/
src/jalview/rest/RestHandler.java
+++ b/
src/jalview/rest/RestHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/AnnotationColourGradient.java
b/src/jalview/schemes/AnnotationColourGradient.java
index
ed8077f
..
4f92d18
100755
(executable)
--- a/
src/jalview/schemes/AnnotationColourGradient.java
+++ b/
src/jalview/schemes/AnnotationColourGradient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/Blosum62ColourScheme.java
b/src/jalview/schemes/Blosum62ColourScheme.java
index
9e226de
..
fda5647
100755
(executable)
--- a/
src/jalview/schemes/Blosum62ColourScheme.java
+++ b/
src/jalview/schemes/Blosum62ColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/BuriedColourScheme.java
b/src/jalview/schemes/BuriedColourScheme.java
index
f2859d3
..
8e610cc
100755
(executable)
--- a/
src/jalview/schemes/BuriedColourScheme.java
+++ b/
src/jalview/schemes/BuriedColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ClustalxColourScheme.java
b/src/jalview/schemes/ClustalxColourScheme.java
index
2ba06dc
..
71e30fb
100755
(executable)
--- a/
src/jalview/schemes/ClustalxColourScheme.java
+++ b/
src/jalview/schemes/ClustalxColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ColourSchemeI.java
b/src/jalview/schemes/ColourSchemeI.java
index
0c393cd
..
44a1974
100755
(executable)
--- a/
src/jalview/schemes/ColourSchemeI.java
+++ b/
src/jalview/schemes/ColourSchemeI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ColourSchemeProperty.java
b/src/jalview/schemes/ColourSchemeProperty.java
index
500047b
..
4f7f12d
100755
(executable)
--- a/
src/jalview/schemes/ColourSchemeProperty.java
+++ b/
src/jalview/schemes/ColourSchemeProperty.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/Consensus.java
b/src/jalview/schemes/Consensus.java
index
337672c
..
1dc541e
100755
(executable)
--- a/
src/jalview/schemes/Consensus.java
+++ b/
src/jalview/schemes/Consensus.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/CovariationColourScheme.java
b/src/jalview/schemes/CovariationColourScheme.java
index
c88393a
..
6a81abe
100644
(file)
--- a/
src/jalview/schemes/CovariationColourScheme.java
+++ b/
src/jalview/schemes/CovariationColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/FollowerColourScheme.java
b/src/jalview/schemes/FollowerColourScheme.java
index
163bcff
..
cdcc6e0
100644
(file)
--- a/
src/jalview/schemes/FollowerColourScheme.java
+++ b/
src/jalview/schemes/FollowerColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/GraduatedColor.java
b/src/jalview/schemes/GraduatedColor.java
index
3de2ab5
..
367e989
100644
(file)
--- a/
src/jalview/schemes/GraduatedColor.java
+++ b/
src/jalview/schemes/GraduatedColor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/HelixColourScheme.java
b/src/jalview/schemes/HelixColourScheme.java
index
a89bc47
..
323c05b
100755
(executable)
--- a/
src/jalview/schemes/HelixColourScheme.java
+++ b/
src/jalview/schemes/HelixColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/HydrophobicColourScheme.java
b/src/jalview/schemes/HydrophobicColourScheme.java
index
56e0106
..
5e3dd44
100755
(executable)
--- a/
src/jalview/schemes/HydrophobicColourScheme.java
+++ b/
src/jalview/schemes/HydrophobicColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/NucleotideColourScheme.java
b/src/jalview/schemes/NucleotideColourScheme.java
index
dd99f8a
..
1bd3132
100755
(executable)
--- a/
src/jalview/schemes/NucleotideColourScheme.java
+++ b/
src/jalview/schemes/NucleotideColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/PIDColourScheme.java
b/src/jalview/schemes/PIDColourScheme.java
index
d21c30f
..
47358da
100755
(executable)
--- a/
src/jalview/schemes/PIDColourScheme.java
+++ b/
src/jalview/schemes/PIDColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/PurinePyrimidineColourScheme.java
b/src/jalview/schemes/PurinePyrimidineColourScheme.java
index
441a117
..
bda6123
100644
(file)
--- a/
src/jalview/schemes/PurinePyrimidineColourScheme.java
+++ b/
src/jalview/schemes/PurinePyrimidineColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/RNAHelicesColour.java
b/src/jalview/schemes/RNAHelicesColour.java
index
9c2ec3e
..
85cbb42
100644
(file)
--- a/
src/jalview/schemes/RNAHelicesColour.java
+++ b/
src/jalview/schemes/RNAHelicesColour.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/RNAHelicesColourChooser.java
b/src/jalview/schemes/RNAHelicesColourChooser.java
index
5a09a34
..
e5e551b
100644
(file)
--- a/
src/jalview/schemes/RNAHelicesColourChooser.java
+++ b/
src/jalview/schemes/RNAHelicesColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/RNAInteractionColourScheme.java
b/src/jalview/schemes/RNAInteractionColourScheme.java
index
e23a497
..
ee8fa54
100644
(file)
--- a/
src/jalview/schemes/RNAInteractionColourScheme.java
+++ b/
src/jalview/schemes/RNAInteractionColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ResidueColourScheme.java
b/src/jalview/schemes/ResidueColourScheme.java
index
3164748
..
c2cd8d7
100755
(executable)
--- a/
src/jalview/schemes/ResidueColourScheme.java
+++ b/
src/jalview/schemes/ResidueColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ResidueProperties.java
b/src/jalview/schemes/ResidueProperties.java
index
092971d
..
a6a7e09
100755
(executable)
--- a/
src/jalview/schemes/ResidueProperties.java
+++ b/
src/jalview/schemes/ResidueProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ScoreColourScheme.java
b/src/jalview/schemes/ScoreColourScheme.java
index
fba1188
..
a99bc1c
100755
(executable)
--- a/
src/jalview/schemes/ScoreColourScheme.java
+++ b/
src/jalview/schemes/ScoreColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ScoreMatrix.java
b/src/jalview/schemes/ScoreMatrix.java
index
e2aa232
..
20b4b77
100644
(file)
--- a/
src/jalview/schemes/ScoreMatrix.java
+++ b/
src/jalview/schemes/ScoreMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/StrandColourScheme.java
b/src/jalview/schemes/StrandColourScheme.java
index
6fe4013
..
14320aa
100755
(executable)
--- a/
src/jalview/schemes/StrandColourScheme.java
+++ b/
src/jalview/schemes/StrandColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TCoffeeColourScheme.java
b/src/jalview/schemes/TCoffeeColourScheme.java
index
bc56281
..
31d2b35
100644
(file)
--- a/
src/jalview/schemes/TCoffeeColourScheme.java
+++ b/
src/jalview/schemes/TCoffeeColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TaylorColourScheme.java
b/src/jalview/schemes/TaylorColourScheme.java
index
da7d265
..
11742d7
100755
(executable)
--- a/
src/jalview/schemes/TaylorColourScheme.java
+++ b/
src/jalview/schemes/TaylorColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TurnColourScheme.java
b/src/jalview/schemes/TurnColourScheme.java
index
c0a4e3c
..
0983d52
100755
(executable)
--- a/
src/jalview/schemes/TurnColourScheme.java
+++ b/
src/jalview/schemes/TurnColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/UserColourScheme.java
b/src/jalview/schemes/UserColourScheme.java
index
dec0a41
..
edde29b
100755
(executable)
--- a/
src/jalview/schemes/UserColourScheme.java
+++ b/
src/jalview/schemes/UserColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ZappoColourScheme.java
b/src/jalview/schemes/ZappoColourScheme.java
index
a313767
..
24bebfd
100755
(executable)
--- a/
src/jalview/schemes/ZappoColourScheme.java
+++ b/
src/jalview/schemes/ZappoColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/AlignmentViewPanelListener.java
b/src/jalview/structure/AlignmentViewPanelListener.java
index
1c4babd
..
9b03d15
100644
(file)
--- a/
src/jalview/structure/AlignmentViewPanelListener.java
+++ b/
src/jalview/structure/AlignmentViewPanelListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/AtomSpec.java
b/src/jalview/structure/AtomSpec.java
index
6dbc557
..
bdb83e2
100644
(file)
--- a/
src/jalview/structure/AtomSpec.java
+++ b/
src/jalview/structure/AtomSpec.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/CommandListener.java
b/src/jalview/structure/CommandListener.java
index
a8df3c8
..
2a0a6bc
100644
(file)
--- a/
src/jalview/structure/CommandListener.java
+++ b/
src/jalview/structure/CommandListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SecondaryStructureListener.java
b/src/jalview/structure/SecondaryStructureListener.java
index
c8be34c
..
b8edb21
100644
(file)
--- a/
src/jalview/structure/SecondaryStructureListener.java
+++ b/
src/jalview/structure/SecondaryStructureListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SelectionListener.java
b/src/jalview/structure/SelectionListener.java
index
582cfd8
..
b3b656c
100644
(file)
--- a/
src/jalview/structure/SelectionListener.java
+++ b/
src/jalview/structure/SelectionListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SelectionSource.java
b/src/jalview/structure/SelectionSource.java
index
b1bf009
..
88c731f
100644
(file)
--- a/
src/jalview/structure/SelectionSource.java
+++ b/
src/jalview/structure/SelectionSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SequenceListener.java
b/src/jalview/structure/SequenceListener.java
index
c44aa0b
..
d895598
100644
(file)
--- a/
src/jalview/structure/SequenceListener.java
+++ b/
src/jalview/structure/SequenceListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureListener.java
b/src/jalview/structure/StructureListener.java
index
755fd0c
..
6b6a185
100644
(file)
--- a/
src/jalview/structure/StructureListener.java
+++ b/
src/jalview/structure/StructureListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureMapping.java
b/src/jalview/structure/StructureMapping.java
index
147cc07
..
06a67ff
100644
(file)
--- a/
src/jalview/structure/StructureMapping.java
+++ b/
src/jalview/structure/StructureMapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureMappingcommandSet.java
b/src/jalview/structure/StructureMappingcommandSet.java
index
c61d90a
..
4aeb55e
100644
(file)
--- a/
src/jalview/structure/StructureMappingcommandSet.java
+++ b/
src/jalview/structure/StructureMappingcommandSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureSelectionManager.java
b/src/jalview/structure/StructureSelectionManager.java
index
c30908c
..
74cab59
100644
(file)
--- a/
src/jalview/structure/StructureSelectionManager.java
+++ b/
src/jalview/structure/StructureSelectionManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/VamsasListener.java
b/src/jalview/structure/VamsasListener.java
index
dbcccd9
..
eabd2b9
100644
(file)
--- a/
src/jalview/structure/VamsasListener.java
+++ b/
src/jalview/structure/VamsasListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/VamsasSource.java
b/src/jalview/structure/VamsasSource.java
index
b9841f6
..
52096b8
100644
(file)
--- a/
src/jalview/structure/VamsasSource.java
+++ b/
src/jalview/structure/VamsasSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structures/models/AAStructureBindingModel.java
b/src/jalview/structures/models/AAStructureBindingModel.java
index
74fee63
..
aa3d778
100644
(file)
--- a/
src/jalview/structures/models/AAStructureBindingModel.java
+++ b/
src/jalview/structures/models/AAStructureBindingModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structures/models/SequenceStructureBindingModel.java
b/src/jalview/structures/models/SequenceStructureBindingModel.java
index
54c1a53
..
2e53873
100644
(file)
--- a/
src/jalview/structures/models/SequenceStructureBindingModel.java
+++ b/
src/jalview/structures/models/SequenceStructureBindingModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/AWTConsole.java
b/src/jalview/util/AWTConsole.java
index
9d4f72a
..
7089c0f
100644
(file)
--- a/
src/jalview/util/AWTConsole.java
+++ b/
src/jalview/util/AWTConsole.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/BrowserLauncher.java
b/src/jalview/util/BrowserLauncher.java
index
52a3cdd
..
1da860b
100755
(executable)
--- a/
src/jalview/util/BrowserLauncher.java
+++ b/
src/jalview/util/BrowserLauncher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ColorUtils.java
b/src/jalview/util/ColorUtils.java
index
c2f54f7
..
a39ae7c
100644
(file)
--- a/
src/jalview/util/ColorUtils.java
+++ b/
src/jalview/util/ColorUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Comparison.java
b/src/jalview/util/Comparison.java
index
c491be4
..
8c643cd
100644
(file)
--- a/
src/jalview/util/Comparison.java
+++ b/
src/jalview/util/Comparison.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/DBRefUtils.java
b/src/jalview/util/DBRefUtils.java
index
32589f7
..
da836ad
100755
(executable)
--- a/
src/jalview/util/DBRefUtils.java
+++ b/
src/jalview/util/DBRefUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Format.java
b/src/jalview/util/Format.java
index
ffc80d3
..
f8eb389
100755
(executable)
--- a/
src/jalview/util/Format.java
+++ b/
src/jalview/util/Format.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/GroupUrlLink.java
b/src/jalview/util/GroupUrlLink.java
index
1acf94b
..
244db75
100644
(file)
--- a/
src/jalview/util/GroupUrlLink.java
+++ b/
src/jalview/util/GroupUrlLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/HttpUtils.java
b/src/jalview/util/HttpUtils.java
index
991a20a
..
68e628a
100644
(file)
--- a/
src/jalview/util/HttpUtils.java
+++ b/
src/jalview/util/HttpUtils.java
@@
-1,6
+1,6
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
diff --git
a/src/jalview/util/ImageMaker.java
b/src/jalview/util/ImageMaker.java
index
3c7ac8c
..
3fdc3c1
100755
(executable)
--- a/
src/jalview/util/ImageMaker.java
+++ b/
src/jalview/util/ImageMaker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/MapList.java
b/src/jalview/util/MapList.java
index
a20a340
..
ebf3fd2
100644
(file)
--- a/
src/jalview/util/MapList.java
+++ b/
src/jalview/util/MapList.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/MappingUtils.java
b/src/jalview/util/MappingUtils.java
index
0933b97
..
aa0afea
100644
(file)
--- a/
src/jalview/util/MappingUtils.java
+++ b/
src/jalview/util/MappingUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/MessageManager.java
b/src/jalview/util/MessageManager.java
index
51f23bb
..
2f993ef
100644
(file)
--- a/
src/jalview/util/MessageManager.java
+++ b/
src/jalview/util/MessageManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ParseHtmlBodyAndLinks.java
b/src/jalview/util/ParseHtmlBodyAndLinks.java
index
e3ff02e
..
6d02d64
100644
(file)
--- a/
src/jalview/util/ParseHtmlBodyAndLinks.java
+++ b/
src/jalview/util/ParseHtmlBodyAndLinks.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Platform.java
b/src/jalview/util/Platform.java
index
ef860d4
..
45df4fb
100644
(file)
--- a/
src/jalview/util/Platform.java
+++ b/
src/jalview/util/Platform.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/QuickSort.java
b/src/jalview/util/QuickSort.java
index
19ef730
..
216f864
100755
(executable)
--- a/
src/jalview/util/QuickSort.java
+++ b/
src/jalview/util/QuickSort.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ReverseListIterator.java
b/src/jalview/util/ReverseListIterator.java
index
1145b66
..
ed802fa
100644
(file)
--- a/
src/jalview/util/ReverseListIterator.java
+++ b/
src/jalview/util/ReverseListIterator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ShiftList.java
b/src/jalview/util/ShiftList.java
index
860a700
..
ad1300a
100644
(file)
--- a/
src/jalview/util/ShiftList.java
+++ b/
src/jalview/util/ShiftList.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/StringUtils.java
b/src/jalview/util/StringUtils.java
index
b499e6e
..
6369dad
100644
(file)
--- a/
src/jalview/util/StringUtils.java
+++ b/
src/jalview/util/StringUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/TableSorter.java
b/src/jalview/util/TableSorter.java
index
77e0577
..
164c840
100755
(executable)
--- a/
src/jalview/util/TableSorter.java
+++ b/
src/jalview/util/TableSorter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/UrlLink.java
b/src/jalview/util/UrlLink.java
index
85a4bc8
..
a6ef8d2
100644
(file)
--- a/
src/jalview/util/UrlLink.java
+++ b/
src/jalview/util/UrlLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/jarInputStreamProvider.java
b/src/jalview/util/jarInputStreamProvider.java
index
17bb015
..
a6b5c5e
100644
(file)
--- a/
src/jalview/util/jarInputStreamProvider.java
+++ b/
src/jalview/util/jarInputStreamProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/AlignmentViewport.java
b/src/jalview/viewmodel/AlignmentViewport.java
index
a15e9a6
..
c5196b1
100644
(file)
--- a/
src/jalview/viewmodel/AlignmentViewport.java
+++ b/
src/jalview/viewmodel/AlignmentViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/PCAModel.java
b/src/jalview/viewmodel/PCAModel.java
index
54a4925
..
34941e4
100644
(file)
--- a/
src/jalview/viewmodel/PCAModel.java
+++ b/
src/jalview/viewmodel/PCAModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java
b/src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java
index
68c5ba8
..
fa56cb5
100644
(file)
--- a/
src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java
+++ b/
src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
b/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
index
e361413
..
2e79577
100644
(file)
--- a/
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
+++ b/
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java
b/src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java
index
93884f5
..
ed867f3
100644
(file)
--- a/
src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java
+++ b/
src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/seqfeatures/FeatureSettingsModel.java
b/src/jalview/viewmodel/seqfeatures/FeatureSettingsModel.java
index
a311bc5
..
7d923dd
100644
(file)
--- a/
src/jalview/viewmodel/seqfeatures/FeatureSettingsModel.java
+++ b/
src/jalview/viewmodel/seqfeatures/FeatureSettingsModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/seqfeatures/FeaturesDisplayed.java
b/src/jalview/viewmodel/seqfeatures/FeaturesDisplayed.java
index
81a06a3
..
3a4d58b
100644
(file)
--- a/
src/jalview/viewmodel/seqfeatures/FeaturesDisplayed.java
+++ b/
src/jalview/viewmodel/seqfeatures/FeaturesDisplayed.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/styles/ViewStyle.java
b/src/jalview/viewmodel/styles/ViewStyle.java
index
a0ba633
..
f54d91c
100644
(file)
--- a/
src/jalview/viewmodel/styles/ViewStyle.java
+++ b/
src/jalview/viewmodel/styles/ViewStyle.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/AlignCalcManager.java
b/src/jalview/workers/AlignCalcManager.java
index
2fa0553
..
475da30
100644
(file)
--- a/
src/jalview/workers/AlignCalcManager.java
+++ b/
src/jalview/workers/AlignCalcManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/AlignCalcWorker.java
b/src/jalview/workers/AlignCalcWorker.java
index
6bdf1c2
..
570af09
100644
(file)
--- a/
src/jalview/workers/AlignCalcWorker.java
+++ b/
src/jalview/workers/AlignCalcWorker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/ComplementConsensusThread.java
b/src/jalview/workers/ComplementConsensusThread.java
index
13e9790
..
fef76ed
100644
(file)
--- a/
src/jalview/workers/ComplementConsensusThread.java
+++ b/
src/jalview/workers/ComplementConsensusThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/ConsensusThread.java
b/src/jalview/workers/ConsensusThread.java
index
ff7e7ce
..
dd0f228
100644
(file)
--- a/
src/jalview/workers/ConsensusThread.java
+++ b/
src/jalview/workers/ConsensusThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/ConservationThread.java
b/src/jalview/workers/ConservationThread.java
index
990f724
..
c0b901e
100644
(file)
--- a/
src/jalview/workers/ConservationThread.java
+++ b/
src/jalview/workers/ConservationThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/StrucConsensusThread.java
b/src/jalview/workers/StrucConsensusThread.java
index
a7f64e7
..
cc4172f
100644
(file)
--- a/
src/jalview/workers/StrucConsensusThread.java
+++ b/
src/jalview/workers/StrucConsensusThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/AWSThread.java
b/src/jalview/ws/AWSThread.java
index
156bd84
..
2074f9f
100644
(file)
--- a/
src/jalview/ws/AWSThread.java
+++ b/
src/jalview/ws/AWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/AWsJob.java
b/src/jalview/ws/AWsJob.java
index
3bd7e65
..
e461d16
100644
(file)
--- a/
src/jalview/ws/AWsJob.java
+++ b/
src/jalview/ws/AWsJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/DBRefFetcher.java
b/src/jalview/ws/DBRefFetcher.java
index
f07b302
..
353f40e
100644
(file)
--- a/
src/jalview/ws/DBRefFetcher.java
+++ b/
src/jalview/ws/DBRefFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/DasSequenceFeatureFetcher.java
b/src/jalview/ws/DasSequenceFeatureFetcher.java
index
345bdd7
..
c1db0b1
100644
(file)
--- a/
src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/
src/jalview/ws/DasSequenceFeatureFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/HttpClientUtils.java
b/src/jalview/ws/HttpClientUtils.java
index
a782917
..
421f000
100644
(file)
--- a/
src/jalview/ws/HttpClientUtils.java
+++ b/
src/jalview/ws/HttpClientUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/JobStateSummary.java
b/src/jalview/ws/JobStateSummary.java
index
f5b678c
..
11008c2
100644
(file)
--- a/
src/jalview/ws/JobStateSummary.java
+++ b/
src/jalview/ws/JobStateSummary.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/SequenceFetcher.java
b/src/jalview/ws/SequenceFetcher.java
index
aba3c6f
..
34e1fb4
100644
(file)
--- a/
src/jalview/ws/SequenceFetcher.java
+++ b/
src/jalview/ws/SequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSClient.java
b/src/jalview/ws/WSClient.java
index
4ca0b76
..
bf4b9b9
100755
(executable)
--- a/
src/jalview/ws/WSClient.java
+++ b/
src/jalview/ws/WSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSClientI.java
b/src/jalview/ws/WSClientI.java
index
2b3539e
..
bc609dd
100755
(executable)
--- a/
src/jalview/ws/WSClientI.java
+++ b/
src/jalview/ws/WSClientI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSMenuEntryProviderI.java
b/src/jalview/ws/WSMenuEntryProviderI.java
index
76f5519
..
09b3ccf
100644
(file)
--- a/
src/jalview/ws/WSMenuEntryProviderI.java
+++ b/
src/jalview/ws/WSMenuEntryProviderI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
index
09ce4bc
..
4b5a386
100644
(file)
--- a/
src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
+++ b/
src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EmblCdsSouce.java
b/src/jalview/ws/dbsources/EmblCdsSouce.java
index
40a4098
..
383f2ae
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblCdsSouce.java
+++ b/
src/jalview/ws/dbsources/EmblCdsSouce.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EmblSource.java
b/src/jalview/ws/dbsources/EmblSource.java
index
3d57000
..
b8ff08f
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblSource.java
+++ b/
src/jalview/ws/dbsources/EmblSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EmblXmlSource.java
b/src/jalview/ws/dbsources/EmblXmlSource.java
index
697e4ee
..
997cc20
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblXmlSource.java
+++ b/
src/jalview/ws/dbsources/EmblXmlSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/GeneDbSource.java
b/src/jalview/ws/dbsources/GeneDbSource.java
index
3b251ed
..
22930a6
100644
(file)
--- a/
src/jalview/ws/dbsources/GeneDbSource.java
+++ b/
src/jalview/ws/dbsources/GeneDbSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/PDBRestClient.java
b/src/jalview/ws/dbsources/PDBRestClient.java
index
44ef3fc
..
d21aacb
100644
(file)
--- a/
src/jalview/ws/dbsources/PDBRestClient.java
+++ b/
src/jalview/ws/dbsources/PDBRestClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Pdb.java
b/src/jalview/ws/dbsources/Pdb.java
index
a125ce4
..
dcea063
100644
(file)
--- a/
src/jalview/ws/dbsources/Pdb.java
+++ b/
src/jalview/ws/dbsources/Pdb.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Pfam.java
b/src/jalview/ws/dbsources/Pfam.java
index
356eac3
..
4cc7120
100644
(file)
--- a/
src/jalview/ws/dbsources/Pfam.java
+++ b/
src/jalview/ws/dbsources/Pfam.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/PfamFull.java
b/src/jalview/ws/dbsources/PfamFull.java
index
a979098
..
a0b480f
100644
(file)
--- a/
src/jalview/ws/dbsources/PfamFull.java
+++ b/
src/jalview/ws/dbsources/PfamFull.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/PfamSeed.java
b/src/jalview/ws/dbsources/PfamSeed.java
index
027db80
..
f1394ad
100644
(file)
--- a/
src/jalview/ws/dbsources/PfamSeed.java
+++ b/
src/jalview/ws/dbsources/PfamSeed.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Rfam.java
b/src/jalview/ws/dbsources/Rfam.java
index
842090d
..
48877cc
100644
(file)
--- a/
src/jalview/ws/dbsources/Rfam.java
+++ b/
src/jalview/ws/dbsources/Rfam.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/RfamFull.java
b/src/jalview/ws/dbsources/RfamFull.java
index
09d5a93
..
bddcc0c
100644
(file)
--- a/
src/jalview/ws/dbsources/RfamFull.java
+++ b/
src/jalview/ws/dbsources/RfamFull.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/RfamSeed.java
b/src/jalview/ws/dbsources/RfamSeed.java
index
22d8c71
..
ff8d26f
100644
(file)
--- a/
src/jalview/ws/dbsources/RfamSeed.java
+++ b/
src/jalview/ws/dbsources/RfamSeed.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Uniprot.java
b/src/jalview/ws/dbsources/Uniprot.java
index
0d38ca6
..
c2efee7
100644
(file)
--- a/
src/jalview/ws/dbsources/Uniprot.java
+++ b/
src/jalview/ws/dbsources/Uniprot.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/UnprotName.java
b/src/jalview/ws/dbsources/UnprotName.java
index
8e4958e
..
8863e81
100644
(file)
--- a/
src/jalview/ws/dbsources/UnprotName.java
+++ b/
src/jalview/ws/dbsources/UnprotName.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Xfam.java
b/src/jalview/ws/dbsources/Xfam.java
index
40ea0fb
..
344f548
100644
(file)
--- a/
src/jalview/ws/dbsources/Xfam.java
+++ b/
src/jalview/ws/dbsources/Xfam.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
b/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
index
3550b42
..
06e1d78
100644
(file)
--- a/
src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
+++ b/
src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
b/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
index
79d003f
..
378a6ab
100644
(file)
--- a/
src/jalview/ws/dbsources/das/api/jalviewSourceI.java
+++ b/
src/jalview/ws/dbsources/das/api/jalviewSourceI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
index
8f00f75
..
168082e
100644
(file)
--- a/
src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
+++ b/
src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
b/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
index
7eb74b3
..
9e0a2bb
100644
(file)
--- a/
src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
+++ b/
src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
index
8cb3fba
..
c30b688
100644
(file)
--- a/
src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
+++ b/
src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/ebi/EBIFetchClient.java
b/src/jalview/ws/ebi/EBIFetchClient.java
index
5c1dd91
..
3c9e6b4
100644
(file)
--- a/
src/jalview/ws/ebi/EBIFetchClient.java
+++ b/
src/jalview/ws/ebi/EBIFetchClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/io/mime/HttpContentHandler.java
b/src/jalview/ws/io/mime/HttpContentHandler.java
index
6d70404
..
6015362
100644
(file)
--- a/
src/jalview/ws/io/mime/HttpContentHandler.java
+++ b/
src/jalview/ws/io/mime/HttpContentHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
b/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
index
1a4ded5
..
b13ab5b
100644
(file)
--- a/
src/jalview/ws/io/mime/JalviewMimeContentHandler.java
+++ b/
src/jalview/ws/io/mime/JalviewMimeContentHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/io/mime/MimeTypes.java
b/src/jalview/ws/io/mime/MimeTypes.java
index
366c945
..
de9b24a
100644
(file)
--- a/
src/jalview/ws/io/mime/MimeTypes.java
+++ b/
src/jalview/ws/io/mime/MimeTypes.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/Annotate3D.java
b/src/jalview/ws/jws1/Annotate3D.java
index
f3516b7
..
cf228d6
100644
(file)
--- a/
src/jalview/ws/jws1/Annotate3D.java
+++ b/
src/jalview/ws/jws1/Annotate3D.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/Discoverer.java
b/src/jalview/ws/jws1/Discoverer.java
index
b4c29d1
..
13d3cd1
100644
(file)
--- a/
src/jalview/ws/jws1/Discoverer.java
+++ b/
src/jalview/ws/jws1/Discoverer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JPredClient.java
b/src/jalview/ws/jws1/JPredClient.java
index
55d0813
..
9190db3
100644
(file)
--- a/
src/jalview/ws/jws1/JPredClient.java
+++ b/
src/jalview/ws/jws1/JPredClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JPredThread.java
b/src/jalview/ws/jws1/JPredThread.java
index
79c39b4
..
30f9272
100644
(file)
--- a/
src/jalview/ws/jws1/JPredThread.java
+++ b/
src/jalview/ws/jws1/JPredThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JWS1Thread.java
b/src/jalview/ws/jws1/JWS1Thread.java
index
97d041e
..
6d471fc
100644
(file)
--- a/
src/jalview/ws/jws1/JWS1Thread.java
+++ b/
src/jalview/ws/jws1/JWS1Thread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/MsaWSClient.java
b/src/jalview/ws/jws1/MsaWSClient.java
index
03b9b8f
..
17fccca
100644
(file)
--- a/
src/jalview/ws/jws1/MsaWSClient.java
+++ b/
src/jalview/ws/jws1/MsaWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/MsaWSThread.java
b/src/jalview/ws/jws1/MsaWSThread.java
index
e6afb04
..
1f3495e
100644
(file)
--- a/
src/jalview/ws/jws1/MsaWSThread.java
+++ b/
src/jalview/ws/jws1/MsaWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/SeqSearchWSClient.java
b/src/jalview/ws/jws1/SeqSearchWSClient.java
index
3783f23
..
0ff2913
100644
(file)
--- a/
src/jalview/ws/jws1/SeqSearchWSClient.java
+++ b/
src/jalview/ws/jws1/SeqSearchWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/SeqSearchWSThread.java
b/src/jalview/ws/jws1/SeqSearchWSThread.java
index
b9ed2e7
..
600eafd
100644
(file)
--- a/
src/jalview/ws/jws1/SeqSearchWSThread.java
+++ b/
src/jalview/ws/jws1/SeqSearchWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/WS1Client.java
b/src/jalview/ws/jws1/WS1Client.java
index
0589ffb
..
e729f58
100644
(file)
--- a/
src/jalview/ws/jws1/WS1Client.java
+++ b/
src/jalview/ws/jws1/WS1Client.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/WSJob.java
b/src/jalview/ws/jws1/WSJob.java
index
8654cb2
..
c3cff59
100644
(file)
--- a/
src/jalview/ws/jws1/WSJob.java
+++ b/
src/jalview/ws/jws1/WSJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AAConClient.java
b/src/jalview/ws/jws2/AAConClient.java
index
0c6c271
..
ef810de
100644
(file)
--- a/
src/jalview/ws/jws2/AAConClient.java
+++ b/
src/jalview/ws/jws2/AAConClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AADisorderClient.java
b/src/jalview/ws/jws2/AADisorderClient.java
index
d955db5
..
65620cc
100644
(file)
--- a/
src/jalview/ws/jws2/AADisorderClient.java
+++ b/
src/jalview/ws/jws2/AADisorderClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AWS2Thread.java
b/src/jalview/ws/jws2/AWS2Thread.java
index
3eaeb3f
..
b4b103a
100644
(file)
--- a/
src/jalview/ws/jws2/AWS2Thread.java
+++ b/
src/jalview/ws/jws2/AWS2Thread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AbstractJabaCalcWorker.java
b/src/jalview/ws/jws2/AbstractJabaCalcWorker.java
index
fa1e3d1
..
1cc6361
100644
(file)
--- a/
src/jalview/ws/jws2/AbstractJabaCalcWorker.java
+++ b/
src/jalview/ws/jws2/AbstractJabaCalcWorker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JPred301Client.java
b/src/jalview/ws/jws2/JPred301Client.java
index
b98eae4
..
0189cf9
100644
(file)
--- a/
src/jalview/ws/jws2/JPred301Client.java
+++ b/
src/jalview/ws/jws2/JPred301Client.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JWs2Job.java
b/src/jalview/ws/jws2/JWs2Job.java
index
602b882
..
558d891
100644
(file)
--- a/
src/jalview/ws/jws2/JWs2Job.java
+++ b/
src/jalview/ws/jws2/JWs2Job.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaParamStore.java
b/src/jalview/ws/jws2/JabaParamStore.java
index
757ee23
..
e3ac85a
100644
(file)
--- a/
src/jalview/ws/jws2/JabaParamStore.java
+++ b/
src/jalview/ws/jws2/JabaParamStore.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaPreset.java
b/src/jalview/ws/jws2/JabaPreset.java
index
561e4e8
..
7dc5c2e
100644
(file)
--- a/
src/jalview/ws/jws2/JabaPreset.java
+++ b/
src/jalview/ws/jws2/JabaPreset.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaWsServerQuery.java
b/src/jalview/ws/jws2/JabaWsServerQuery.java
index
e376a73
..
b47f9b0
100644
(file)
--- a/
src/jalview/ws/jws2/JabaWsServerQuery.java
+++ b/
src/jalview/ws/jws2/JabaWsServerQuery.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabawsCalcWorker.java
b/src/jalview/ws/jws2/JabawsCalcWorker.java
index
d2e5bcd
..
1fc85ad
100644
(file)
--- a/
src/jalview/ws/jws2/JabawsCalcWorker.java
+++ b/
src/jalview/ws/jws2/JabawsCalcWorker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
b/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
index
d45a0e1
..
6d29f40
100644
(file)
--- a/
src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
+++ b/
src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/Jws2Client.java
b/src/jalview/ws/jws2/Jws2Client.java
index
d8fb846
..
724dc26
100644
(file)
--- a/
src/jalview/ws/jws2/Jws2Client.java
+++ b/
src/jalview/ws/jws2/Jws2Client.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/Jws2Discoverer.java
b/src/jalview/ws/jws2/Jws2Discoverer.java
index
60fa85b
..
76f9689
100644
(file)
--- a/
src/jalview/ws/jws2/Jws2Discoverer.java
+++ b/
src/jalview/ws/jws2/Jws2Discoverer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/MsaWSClient.java
b/src/jalview/ws/jws2/MsaWSClient.java
index
b961cfd
..
152adad
100644
(file)
--- a/
src/jalview/ws/jws2/MsaWSClient.java
+++ b/
src/jalview/ws/jws2/MsaWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/MsaWSThread.java
b/src/jalview/ws/jws2/MsaWSThread.java
index
40e6de7
..
d72ea5f
100644
(file)
--- a/
src/jalview/ws/jws2/MsaWSThread.java
+++ b/
src/jalview/ws/jws2/MsaWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/ParameterUtils.java
b/src/jalview/ws/jws2/ParameterUtils.java
index
99a0d2c
..
b55a28c
100644
(file)
--- a/
src/jalview/ws/jws2/ParameterUtils.java
+++ b/
src/jalview/ws/jws2/ParameterUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/RNAalifoldClient.java
b/src/jalview/ws/jws2/RNAalifoldClient.java
index
769100e
..
b613a5b
100644
(file)
--- a/
src/jalview/ws/jws2/RNAalifoldClient.java
+++ b/
src/jalview/ws/jws2/RNAalifoldClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
b/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
index
75cb678
..
c51cea9
100644
(file)
--- a/
src/jalview/ws/jws2/SequenceAnnotationWSClient.java
+++ b/
src/jalview/ws/jws2/SequenceAnnotationWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/AAConSettings.java
b/src/jalview/ws/jws2/dm/AAConSettings.java
index
285b755
..
fd89a4c
100644
(file)
--- a/
src/jalview/ws/jws2/dm/AAConSettings.java
+++ b/
src/jalview/ws/jws2/dm/AAConSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaOption.java
b/src/jalview/ws/jws2/dm/JabaOption.java
index
66b3112
..
9d63444
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaOption.java
+++ b/
src/jalview/ws/jws2/dm/JabaOption.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaParameter.java
b/src/jalview/ws/jws2/dm/JabaParameter.java
index
214c15d
..
8bd3805
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaParameter.java
+++ b/
src/jalview/ws/jws2/dm/JabaParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaValueConstrain.java
b/src/jalview/ws/jws2/dm/JabaValueConstrain.java
index
7aff089
..
a752b7a
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaValueConstrain.java
+++ b/
src/jalview/ws/jws2/dm/JabaValueConstrain.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaWsParamSet.java
b/src/jalview/ws/jws2/dm/JabaWsParamSet.java
index
07ad45d
..
3cab582
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaWsParamSet.java
+++ b/
src/jalview/ws/jws2/dm/JabaWsParamSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
index
a1307f5
..
b5fdf3b
100644
(file)
--- a/
src/jalview/ws/jws2/jabaws2/Jws2Instance.java
+++ b/
src/jalview/ws/jws2/jabaws2/Jws2Instance.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
b/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
index
105a0c3
..
1bc1d63
100644
(file)
--- a/
src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
+++ b/
src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ArgumentI.java
b/src/jalview/ws/params/ArgumentI.java
index
8d57d0a
..
9bf60b5
100644
(file)
--- a/
src/jalview/ws/params/ArgumentI.java
+++ b/
src/jalview/ws/params/ArgumentI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/AutoCalcSetting.java
b/src/jalview/ws/params/AutoCalcSetting.java
index
cf892cb
..
296db95
100644
(file)
--- a/
src/jalview/ws/params/AutoCalcSetting.java
+++ b/
src/jalview/ws/params/AutoCalcSetting.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/InvalidArgumentException.java
b/src/jalview/ws/params/InvalidArgumentException.java
index
58a20dc
..
7b3d20c
100644
(file)
--- a/
src/jalview/ws/params/InvalidArgumentException.java
+++ b/
src/jalview/ws/params/InvalidArgumentException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/OptionI.java
b/src/jalview/ws/params/OptionI.java
index
1fa7944
..
6492702
100644
(file)
--- a/
src/jalview/ws/params/OptionI.java
+++ b/
src/jalview/ws/params/OptionI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParamDatastoreI.java
b/src/jalview/ws/params/ParamDatastoreI.java
index
8ed54b2
..
c481f44
100644
(file)
--- a/
src/jalview/ws/params/ParamDatastoreI.java
+++ b/
src/jalview/ws/params/ParamDatastoreI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParamManager.java
b/src/jalview/ws/params/ParamManager.java
index
0d01c28
..
0000f60
100644
(file)
--- a/
src/jalview/ws/params/ParamManager.java
+++ b/
src/jalview/ws/params/ParamManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParameterI.java
b/src/jalview/ws/params/ParameterI.java
index
cd85c1a
..
044d3ef
100644
(file)
--- a/
src/jalview/ws/params/ParameterI.java
+++ b/
src/jalview/ws/params/ParameterI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ValueConstrainI.java
b/src/jalview/ws/params/ValueConstrainI.java
index
fa7a706
..
2c855ed
100644
(file)
--- a/
src/jalview/ws/params/ValueConstrainI.java
+++ b/
src/jalview/ws/params/ValueConstrainI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/WsParamSetI.java
b/src/jalview/ws/params/WsParamSetI.java
index
2223d58
..
b7b40c0
100644
(file)
--- a/
src/jalview/ws/params/WsParamSetI.java
+++ b/
src/jalview/ws/params/WsParamSetI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/BooleanOption.java
b/src/jalview/ws/params/simple/BooleanOption.java
index
484a46d
..
db43eb8
100644
(file)
--- a/
src/jalview/ws/params/simple/BooleanOption.java
+++ b/
src/jalview/ws/params/simple/BooleanOption.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/IntegerParameter.java
b/src/jalview/ws/params/simple/IntegerParameter.java
index
88cb488
..
e014732
100644
(file)
--- a/
src/jalview/ws/params/simple/IntegerParameter.java
+++ b/
src/jalview/ws/params/simple/IntegerParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/Option.java
b/src/jalview/ws/params/simple/Option.java
index
c3c6db2
..
74c3d04
100644
(file)
--- a/
src/jalview/ws/params/simple/Option.java
+++ b/
src/jalview/ws/params/simple/Option.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/Parameter.java
b/src/jalview/ws/params/simple/Parameter.java
index
46767db
..
06cae9a
100644
(file)
--- a/
src/jalview/ws/params/simple/Parameter.java
+++ b/
src/jalview/ws/params/simple/Parameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/StringChoiceParameter.java
b/src/jalview/ws/params/simple/StringChoiceParameter.java
index
74023b7
..
91d24e0
100644
(file)
--- a/
src/jalview/ws/params/simple/StringChoiceParameter.java
+++ b/
src/jalview/ws/params/simple/StringChoiceParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/AlignmentProcessor.java
b/src/jalview/ws/rest/AlignmentProcessor.java
index
43193b6
..
2ff5022
100644
(file)
--- a/
src/jalview/ws/rest/AlignmentProcessor.java
+++ b/
src/jalview/ws/rest/AlignmentProcessor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/HttpResultSet.java
b/src/jalview/ws/rest/HttpResultSet.java
index
836ca09
..
6e7fe00
100644
(file)
--- a/
src/jalview/ws/rest/HttpResultSet.java
+++ b/
src/jalview/ws/rest/HttpResultSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/InputType.java
b/src/jalview/ws/rest/InputType.java
index
df340b0
..
59b4cfc
100644
(file)
--- a/
src/jalview/ws/rest/InputType.java
+++ b/
src/jalview/ws/rest/InputType.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/NoValidInputDataException.java
b/src/jalview/ws/rest/NoValidInputDataException.java
index
2038973
..
ef16bb2
100644
(file)
--- a/
src/jalview/ws/rest/NoValidInputDataException.java
+++ b/
src/jalview/ws/rest/NoValidInputDataException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestClient.java
b/src/jalview/ws/rest/RestClient.java
index
202ea12
..
03918a8
100644
(file)
--- a/
src/jalview/ws/rest/RestClient.java
+++ b/
src/jalview/ws/rest/RestClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestJob.java
b/src/jalview/ws/rest/RestJob.java
index
0378d62
..
bb8fb72
100644
(file)
--- a/
src/jalview/ws/rest/RestJob.java
+++ b/
src/jalview/ws/rest/RestJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestJobThread.java
b/src/jalview/ws/rest/RestJobThread.java
index
2d5a83a
..
cbbfd07
100644
(file)
--- a/
src/jalview/ws/rest/RestJobThread.java
+++ b/
src/jalview/ws/rest/RestJobThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestServiceDescription.java
b/src/jalview/ws/rest/RestServiceDescription.java
index
d97ad07
..
311a922
100644
(file)
--- a/
src/jalview/ws/rest/RestServiceDescription.java
+++ b/
src/jalview/ws/rest/RestServiceDescription.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/Alignment.java
b/src/jalview/ws/rest/params/Alignment.java
index
d7b1fc7
..
f8319fc
100644
(file)
--- a/
src/jalview/ws/rest/params/Alignment.java
+++ b/
src/jalview/ws/rest/params/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/AnnotationFile.java
b/src/jalview/ws/rest/params/AnnotationFile.java
index
dd1f39e
..
a8bf2d1
100644
(file)
--- a/
src/jalview/ws/rest/params/AnnotationFile.java
+++ b/
src/jalview/ws/rest/params/AnnotationFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/JobConstant.java
b/src/jalview/ws/rest/params/JobConstant.java
index
da12bb9
..
9a7e610
100644
(file)
--- a/
src/jalview/ws/rest/params/JobConstant.java
+++ b/
src/jalview/ws/rest/params/JobConstant.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/SeqGroupIndexVector.java
b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
index
6bc208b
..
af96fea
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqGroupIndexVector.java
+++ b/
src/jalview/ws/rest/params/SeqGroupIndexVector.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/SeqIdVector.java
b/src/jalview/ws/rest/params/SeqIdVector.java
index
66703a0
..
c125b64
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqIdVector.java
+++ b/
src/jalview/ws/rest/params/SeqIdVector.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/SeqVector.java
b/src/jalview/ws/rest/params/SeqVector.java
index
0be6b98
..
e9842ef
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqVector.java
+++ b/
src/jalview/ws/rest/params/SeqVector.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/Tree.java
b/src/jalview/ws/rest/params/Tree.java
index
736e155
..
8f33db8
100644
(file)
--- a/
src/jalview/ws/rest/params/Tree.java
+++ b/
src/jalview/ws/rest/params/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
index
4dcc657
..
ba94139
100644
(file)
--- a/
src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/
src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/seqfetcher/DbSourceProxy.java
b/src/jalview/ws/seqfetcher/DbSourceProxy.java
index
57beea2
..
ee6bb2a
100644
(file)
--- a/
src/jalview/ws/seqfetcher/DbSourceProxy.java
+++ b/
src/jalview/ws/seqfetcher/DbSourceProxy.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
index
f0407ad
..
10aa578
100644
(file)
--- a/
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
+++ b/
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/uimodel/AlignAnalysisUIText.java
b/src/jalview/ws/uimodel/AlignAnalysisUIText.java
index
5b13bb9
..
4cc8375
100644
(file)
--- a/
src/jalview/ws/uimodel/AlignAnalysisUIText.java
+++ b/
src/jalview/ws/uimodel/AlignAnalysisUIText.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/org/jibble/epsgraphics/EpsDocument.java
b/src/org/jibble/epsgraphics/EpsDocument.java
index
1e71632
..
d137bcf
100755
(executable)
--- a/
src/org/jibble/epsgraphics/EpsDocument.java
+++ b/
src/org/jibble/epsgraphics/EpsDocument.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/org/jibble/epsgraphics/EpsException.java
b/src/org/jibble/epsgraphics/EpsException.java
index
faaaa07
..
a708909
100755
(executable)
--- a/
src/org/jibble/epsgraphics/EpsException.java
+++ b/
src/org/jibble/epsgraphics/EpsException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/org/jibble/epsgraphics/EpsGraphics2D.java
b/src/org/jibble/epsgraphics/EpsGraphics2D.java
index
34a4ae2
..
1f297b0
100755
(executable)
--- a/
src/org/jibble/epsgraphics/EpsGraphics2D.java
+++ b/
src/org/jibble/epsgraphics/EpsGraphics2D.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/CrossReference.java
b/src/uk/ac/ebi/picr/model/CrossReference.java
index
edadddc
..
d041c43
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/CrossReference.java
+++ b/
src/uk/ac/ebi/picr/model/CrossReference.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
b/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
index
5b5c3f7
..
d37aea9
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/CrossReference_Helper.java
+++ b/
src/uk/ac/ebi/picr/model/CrossReference_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/UPEntry.java
b/src/uk/ac/ebi/picr/model/UPEntry.java
index
ca9b1f4
..
679e869
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/UPEntry.java
+++ b/
src/uk/ac/ebi/picr/model/UPEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
b/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
index
fba9b44
..
4aefb6f
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/UPEntry_Helper.java
+++ b/
src/uk/ac/ebi/picr/model/UPEntry_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/Data.java
b/src/uk/ac/ebi/www/Data.java
index
9a71fdd
..
257ca66
100755
(executable)
--- a/
src/uk/ac/ebi/www/Data.java
+++ b/
src/uk/ac/ebi/www/Data.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/InputParams.java
b/src/uk/ac/ebi/www/InputParams.java
index
696214a
..
c7bcc6b
100755
(executable)
--- a/
src/uk/ac/ebi/www/InputParams.java
+++ b/
src/uk/ac/ebi/www/InputParams.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSFile.java
b/src/uk/ac/ebi/www/WSFile.java
index
04dfe41
..
a29822a
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSFile.java
+++ b/
src/uk/ac/ebi/www/WSFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlast.java
b/src/uk/ac/ebi/www/WSWUBlast.java
index
e540ebc
..
a724a70
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlast.java
+++ b/
src/uk/ac/ebi/www/WSWUBlast.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastService.java
b/src/uk/ac/ebi/www/WSWUBlastService.java
index
ee9ee35
..
56f9826
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastService.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
b/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
index
ae8b2a8
..
70a14e6
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
b/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
index
ce192ee
..
3199e97
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
index
0e679dc
..
aa13d25
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
index
7bff797
..
21bc5f9
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
index
a384dbe
..
dc6abe7
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
index
3936f73
..
5629529
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/IMsaWS.java
b/src/vamsas/IMsaWS.java
index
1a5d92d
..
97c88b3
100755
(executable)
--- a/
src/vamsas/IMsaWS.java
+++ b/
src/vamsas/IMsaWS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Alignment.java
b/src/vamsas/objects/simple/Alignment.java
index
7070015
..
1ed69a4
100755
(executable)
--- a/
src/vamsas/objects/simple/Alignment.java
+++ b/
src/vamsas/objects/simple/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Alignment_Helper.java
b/src/vamsas/objects/simple/Alignment_Helper.java
index
1e31e0b
..
caf0d3f
100755
(executable)
--- a/
src/vamsas/objects/simple/Alignment_Helper.java
+++ b/
src/vamsas/objects/simple/Alignment_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/JpredResult.java
b/src/vamsas/objects/simple/JpredResult.java
index
5e28795
..
dccbc3b
100755
(executable)
--- a/
src/vamsas/objects/simple/JpredResult.java
+++ b/
src/vamsas/objects/simple/JpredResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/JpredResult_Helper.java
b/src/vamsas/objects/simple/JpredResult_Helper.java
index
36c65ee
..
b47f44e
100755
(executable)
--- a/
src/vamsas/objects/simple/JpredResult_Helper.java
+++ b/
src/vamsas/objects/simple/JpredResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/MsaResult.java
b/src/vamsas/objects/simple/MsaResult.java
index
06c9853
..
ebb4449
100755
(executable)
--- a/
src/vamsas/objects/simple/MsaResult.java
+++ b/
src/vamsas/objects/simple/MsaResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/MsaResult_Helper.java
b/src/vamsas/objects/simple/MsaResult_Helper.java
index
4a140b7
..
128cd25
100755
(executable)
--- a/
src/vamsas/objects/simple/MsaResult_Helper.java
+++ b/
src/vamsas/objects/simple/MsaResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Msfalignment.java
b/src/vamsas/objects/simple/Msfalignment.java
index
39814f9
..
1f153d4
100755
(executable)
--- a/
src/vamsas/objects/simple/Msfalignment.java
+++ b/
src/vamsas/objects/simple/Msfalignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Msfalignment_Helper.java
b/src/vamsas/objects/simple/Msfalignment_Helper.java
index
47dbd9c
..
8022645
100755
(executable)
--- a/
src/vamsas/objects/simple/Msfalignment_Helper.java
+++ b/
src/vamsas/objects/simple/Msfalignment_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Object.java
b/src/vamsas/objects/simple/Object.java
index
713db9b
..
f7b6234
100755
(executable)
--- a/
src/vamsas/objects/simple/Object.java
+++ b/
src/vamsas/objects/simple/Object.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Object_Helper.java
b/src/vamsas/objects/simple/Object_Helper.java
index
0b81b50
..
065bb04
100755
(executable)
--- a/
src/vamsas/objects/simple/Object_Helper.java
+++ b/
src/vamsas/objects/simple/Object_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Result.java
b/src/vamsas/objects/simple/Result.java
index
2361016
..
ced280e
100755
(executable)
--- a/
src/vamsas/objects/simple/Result.java
+++ b/
src/vamsas/objects/simple/Result.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Result_Helper.java
b/src/vamsas/objects/simple/Result_Helper.java
index
6758287
..
0cd1f19
100755
(executable)
--- a/
src/vamsas/objects/simple/Result_Helper.java
+++ b/
src/vamsas/objects/simple/Result_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Secstructpred.java
b/src/vamsas/objects/simple/Secstructpred.java
index
ad7d67c
..
f72dcb7
100755
(executable)
--- a/
src/vamsas/objects/simple/Secstructpred.java
+++ b/
src/vamsas/objects/simple/Secstructpred.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Secstructpred_Helper.java
b/src/vamsas/objects/simple/Secstructpred_Helper.java
index
646eafa
..
37c393b
100755
(executable)
--- a/
src/vamsas/objects/simple/Secstructpred_Helper.java
+++ b/
src/vamsas/objects/simple/Secstructpred_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SeqSearchResult.java
b/src/vamsas/objects/simple/SeqSearchResult.java
index
7813607
..
3cecb44
100644
(file)
--- a/
src/vamsas/objects/simple/SeqSearchResult.java
+++ b/
src/vamsas/objects/simple/SeqSearchResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SeqSearchResult_Helper.java
b/src/vamsas/objects/simple/SeqSearchResult_Helper.java
index
b5a112f
..
09afa5b
100644
(file)
--- a/
src/vamsas/objects/simple/SeqSearchResult_Helper.java
+++ b/
src/vamsas/objects/simple/SeqSearchResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Sequence.java
b/src/vamsas/objects/simple/Sequence.java
index
0943dce
..
abf5af4
100755
(executable)
--- a/
src/vamsas/objects/simple/Sequence.java
+++ b/
src/vamsas/objects/simple/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SequenceSet.java
b/src/vamsas/objects/simple/SequenceSet.java
index
9f024bc
..
311e7fb
100755
(executable)
--- a/
src/vamsas/objects/simple/SequenceSet.java
+++ b/
src/vamsas/objects/simple/SequenceSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SequenceSet_Helper.java
b/src/vamsas/objects/simple/SequenceSet_Helper.java
index
59badf3
..
e0f2698
100755
(executable)
--- a/
src/vamsas/objects/simple/SequenceSet_Helper.java
+++ b/
src/vamsas/objects/simple/SequenceSet_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Sequence_Helper.java
b/src/vamsas/objects/simple/Sequence_Helper.java
index
2f24b7b
..
a5bba17
100755
(executable)
--- a/
src/vamsas/objects/simple/Sequence_Helper.java
+++ b/
src/vamsas/objects/simple/Sequence_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/WsJobId.java
b/src/vamsas/objects/simple/WsJobId.java
index
3efaf36
..
22fa555
100755
(executable)
--- a/
src/vamsas/objects/simple/WsJobId.java
+++ b/
src/vamsas/objects/simple/WsJobId.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/WsJobId_Helper.java
b/src/vamsas/objects/simple/WsJobId_Helper.java
index
4fa1555
..
bed2a48
100755
(executable)
--- a/
src/vamsas/objects/simple/WsJobId_Helper.java
+++ b/
src/vamsas/objects/simple/WsJobId_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/MCview/AtomTest.java
b/test/MCview/AtomTest.java
index
02ea52e
..
560b1a1
100644
(file)
--- a/
test/MCview/AtomTest.java
+++ b/
test/MCview/AtomTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/MCview/BondTest.java
b/test/MCview/BondTest.java
index
f3444c7
..
1f5ae81
100644
(file)
--- a/
test/MCview/BondTest.java
+++ b/
test/MCview/BondTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/MCview/PDBChainTest.java
b/test/MCview/PDBChainTest.java
index
159b206
..
ce020c9
100644
(file)
--- a/
test/MCview/PDBChainTest.java
+++ b/
test/MCview/PDBChainTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/MCview/PDBfileTest.java
b/test/MCview/PDBfileTest.java
index
59c7475
..
9427cd2
100644
(file)
--- a/
test/MCview/PDBfileTest.java
+++ b/
test/MCview/PDBfileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/MCview/ResidueTest.java
b/test/MCview/ResidueTest.java
index
7994981
..
a7a7ce1
100644
(file)
--- a/
test/MCview/ResidueTest.java
+++ b/
test/MCview/ResidueTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/AAFrequencyTest.java
b/test/jalview/analysis/AAFrequencyTest.java
index
2d64d28
..
94a04a6
100644
(file)
--- a/
test/jalview/analysis/AAFrequencyTest.java
+++ b/
test/jalview/analysis/AAFrequencyTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/AlignSeqTest.java
b/test/jalview/analysis/AlignSeqTest.java
index
61c2dc1
..
5c4cb08
100644
(file)
--- a/
test/jalview/analysis/AlignSeqTest.java
+++ b/
test/jalview/analysis/AlignSeqTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
b/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
index
7681928
..
4692fe4
100644
(file)
--- a/
test/jalview/analysis/AlignmentAnnotationUtilsTest.java
+++ b/
test/jalview/analysis/AlignmentAnnotationUtilsTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/AlignmentUtilsTests.java
b/test/jalview/analysis/AlignmentUtilsTests.java
index
6225397
..
4b74032
100644
(file)
--- a/
test/jalview/analysis/AlignmentUtilsTests.java
+++ b/
test/jalview/analysis/AlignmentUtilsTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/AnnotationSorterTest.java
b/test/jalview/analysis/AnnotationSorterTest.java
index
d6b31a0
..
243b0e4
100644
(file)
--- a/
test/jalview/analysis/AnnotationSorterTest.java
+++ b/
test/jalview/analysis/AnnotationSorterTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/CodingUtilsTest.java
b/test/jalview/analysis/CodingUtilsTest.java
index
afe154f
..
a4ac65a
100644
(file)
--- a/
test/jalview/analysis/CodingUtilsTest.java
+++ b/
test/jalview/analysis/CodingUtilsTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/CrossRefTest.java
b/test/jalview/analysis/CrossRefTest.java
index
4c4c7df
..
38fc59f
100644
(file)
--- a/
test/jalview/analysis/CrossRefTest.java
+++ b/
test/jalview/analysis/CrossRefTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/DnaAlignmentGenerator.java
b/test/jalview/analysis/DnaAlignmentGenerator.java
index
e0f9af1
..
7290b43
100644
(file)
--- a/
test/jalview/analysis/DnaAlignmentGenerator.java
+++ b/
test/jalview/analysis/DnaAlignmentGenerator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/DnaTest.java
b/test/jalview/analysis/DnaTest.java
index
c8f07ec
..
ae4d461
100644
(file)
--- a/
test/jalview/analysis/DnaTest.java
+++ b/
test/jalview/analysis/DnaTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/GroupingTest.java
b/test/jalview/analysis/GroupingTest.java
index
1a04517
..
6e1a620
100644
(file)
--- a/
test/jalview/analysis/GroupingTest.java
+++ b/
test/jalview/analysis/GroupingTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/ParsePropertiesTest.java
b/test/jalview/analysis/ParsePropertiesTest.java
index
7840824
..
2d7d54c
100644
(file)
--- a/
test/jalview/analysis/ParsePropertiesTest.java
+++ b/
test/jalview/analysis/ParsePropertiesTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/RnaTest.java
b/test/jalview/analysis/RnaTest.java
index
17279cd
..
dc738b3
100644
(file)
--- a/
test/jalview/analysis/RnaTest.java
+++ b/
test/jalview/analysis/RnaTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/TestAlignSeq.java
b/test/jalview/analysis/TestAlignSeq.java
index
2dee421
..
07aff4b
100644
(file)
--- a/
test/jalview/analysis/TestAlignSeq.java
+++ b/
test/jalview/analysis/TestAlignSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/scoremodels/FeatureScoreModelTest.java
b/test/jalview/analysis/scoremodels/FeatureScoreModelTest.java
index
61c4913
..
df5502e
100644
(file)
--- a/
test/jalview/analysis/scoremodels/FeatureScoreModelTest.java
+++ b/
test/jalview/analysis/scoremodels/FeatureScoreModelTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/bin/CommandLineOperations.java
b/test/jalview/bin/CommandLineOperations.java
index
dae07c1
..
0670327
100644
(file)
--- a/
test/jalview/bin/CommandLineOperations.java
+++ b/
test/jalview/bin/CommandLineOperations.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/bin/JalviewLiteTest.java
b/test/jalview/bin/JalviewLiteTest.java
index
8276300
..
79310a0
100644
(file)
--- a/
test/jalview/bin/JalviewLiteTest.java
+++ b/
test/jalview/bin/JalviewLiteTest.java
@@
-1,6
+1,6
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
diff --git
a/test/jalview/commands/EditCommandTest.java
b/test/jalview/commands/EditCommandTest.java
index
3bb98eb
..
fe67e5f
100644
(file)
--- a/
test/jalview/commands/EditCommandTest.java
+++ b/
test/jalview/commands/EditCommandTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/AlignedCodonFrameTest.java
b/test/jalview/datamodel/AlignedCodonFrameTest.java
index
1c85673
..
0b1a7f5
100644
(file)
--- a/
test/jalview/datamodel/AlignedCodonFrameTest.java
+++ b/
test/jalview/datamodel/AlignedCodonFrameTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/AlignedCodonIteratorTest.java
b/test/jalview/datamodel/AlignedCodonIteratorTest.java
index
3b69e17
..
d2cebaa
100644
(file)
--- a/
test/jalview/datamodel/AlignedCodonIteratorTest.java
+++ b/
test/jalview/datamodel/AlignedCodonIteratorTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/AlignedCodonTest.java
b/test/jalview/datamodel/AlignedCodonTest.java
index
52e017a
..
898bab3
100644
(file)
--- a/
test/jalview/datamodel/AlignedCodonTest.java
+++ b/
test/jalview/datamodel/AlignedCodonTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/AlignmentAnnotationTests.java
b/test/jalview/datamodel/AlignmentAnnotationTests.java
index
fd292d3
..
d5e9d03
100644
(file)
--- a/
test/jalview/datamodel/AlignmentAnnotationTests.java
+++ b/
test/jalview/datamodel/AlignmentAnnotationTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/AlignmentTest.java
b/test/jalview/datamodel/AlignmentTest.java
index
24406e6
..
da73c50
100644
(file)
--- a/
test/jalview/datamodel/AlignmentTest.java
+++ b/
test/jalview/datamodel/AlignmentTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/AlignmentViewTest.java
b/test/jalview/datamodel/AlignmentViewTest.java
index
bce2289
..
7cb502c
100644
(file)
--- a/
test/jalview/datamodel/AlignmentViewTest.java
+++ b/
test/jalview/datamodel/AlignmentViewTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/ColumnSelectionTest.java
b/test/jalview/datamodel/ColumnSelectionTest.java
index
368a433
..
bf2df26
100644
(file)
--- a/
test/jalview/datamodel/ColumnSelectionTest.java
+++ b/
test/jalview/datamodel/ColumnSelectionTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/DBRefEntryTest.java
b/test/jalview/datamodel/DBRefEntryTest.java
index
f6e92f4
..
cca6bcf
100644
(file)
--- a/
test/jalview/datamodel/DBRefEntryTest.java
+++ b/
test/jalview/datamodel/DBRefEntryTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/MappingTest.java
b/test/jalview/datamodel/MappingTest.java
index
f8d3db1
..
a295017
100644
(file)
--- a/
test/jalview/datamodel/MappingTest.java
+++ b/
test/jalview/datamodel/MappingTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/MatchTest.java
b/test/jalview/datamodel/MatchTest.java
index
2ba488e
..
48cbb11
100644
(file)
--- a/
test/jalview/datamodel/MatchTest.java
+++ b/
test/jalview/datamodel/MatchTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/PDBEntryTest.java
b/test/jalview/datamodel/PDBEntryTest.java
index
cc7b1e4
..
0f32fbb
100644
(file)
--- a/
test/jalview/datamodel/PDBEntryTest.java
+++ b/
test/jalview/datamodel/PDBEntryTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/SearchResultsTest.java
b/test/jalview/datamodel/SearchResultsTest.java
index
aa9d3af
..
e21fe69
100644
(file)
--- a/
test/jalview/datamodel/SearchResultsTest.java
+++ b/
test/jalview/datamodel/SearchResultsTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/SeqCigarTest.java
b/test/jalview/datamodel/SeqCigarTest.java
index
8ef050c
..
c51a080
100644
(file)
--- a/
test/jalview/datamodel/SeqCigarTest.java
+++ b/
test/jalview/datamodel/SeqCigarTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/SequenceDummyTest.java
b/test/jalview/datamodel/SequenceDummyTest.java
index
d65653a
..
ab0e55a
100644
(file)
--- a/
test/jalview/datamodel/SequenceDummyTest.java
+++ b/
test/jalview/datamodel/SequenceDummyTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/SequenceTest.java
b/test/jalview/datamodel/SequenceTest.java
index
ecc633c
..
e3d3fc0
100644
(file)
--- a/
test/jalview/datamodel/SequenceTest.java
+++ b/
test/jalview/datamodel/SequenceTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/datamodel/xdb/embl/EmblFileTest.java
b/test/jalview/datamodel/xdb/embl/EmblFileTest.java
index
81be1be
..
ca61c9c
100644
(file)
--- a/
test/jalview/datamodel/xdb/embl/EmblFileTest.java
+++ b/
test/jalview/datamodel/xdb/embl/EmblFileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ext/jmol/JmolViewerTest.java
b/test/jalview/ext/jmol/JmolViewerTest.java
index
93def6e
..
22d2e72
100644
(file)
--- a/
test/jalview/ext/jmol/JmolViewerTest.java
+++ b/
test/jalview/ext/jmol/JmolViewerTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ext/jmol/PDBFileWithJmolTest.java
b/test/jalview/ext/jmol/PDBFileWithJmolTest.java
index
fa3922b
..
76f617f
100644
(file)
--- a/
test/jalview/ext/jmol/PDBFileWithJmolTest.java
+++ b/
test/jalview/ext/jmol/PDBFileWithJmolTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ext/paradise/TestAnnotate3D.java
b/test/jalview/ext/paradise/TestAnnotate3D.java
index
fc934b2
..
e2b6e0f
100644
(file)
--- a/
test/jalview/ext/paradise/TestAnnotate3D.java
+++ b/
test/jalview/ext/paradise/TestAnnotate3D.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ext/rbvi/chimera/AllTests.java
b/test/jalview/ext/rbvi/chimera/AllTests.java
index
a70e873
..
8269a47
100644
(file)
--- a/
test/jalview/ext/rbvi/chimera/AllTests.java
+++ b/
test/jalview/ext/rbvi/chimera/AllTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java
b/test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java
index
317d15e
..
c3ac7e4
100644
(file)
--- a/
test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java
+++ b/
test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ext/rbvi/chimera/ChimeraConnect.java
b/test/jalview/ext/rbvi/chimera/ChimeraConnect.java
index
3acc01a
..
6040757
100644
(file)
--- a/
test/jalview/ext/rbvi/chimera/ChimeraConnect.java
+++ b/
test/jalview/ext/rbvi/chimera/ChimeraConnect.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ext/rbvi/chimera/JalviewChimeraView.java
b/test/jalview/ext/rbvi/chimera/JalviewChimeraView.java
index
d7da606
..
2e6b35d
100644
(file)
--- a/
test/jalview/ext/rbvi/chimera/JalviewChimeraView.java
+++ b/
test/jalview/ext/rbvi/chimera/JalviewChimeraView.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/AlignViewportTest.java
b/test/jalview/gui/AlignViewportTest.java
index
8be9906
..
2052dfa
100644
(file)
--- a/
test/jalview/gui/AlignViewportTest.java
+++ b/
test/jalview/gui/AlignViewportTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/AnnotationChooserTest.java
b/test/jalview/gui/AnnotationChooserTest.java
index
29e2c38
..
371252f
100644
(file)
--- a/
test/jalview/gui/AnnotationChooserTest.java
+++ b/
test/jalview/gui/AnnotationChooserTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/AppVarnaTest.java
b/test/jalview/gui/AppVarnaTest.java
index
76ccd39
..
a326b6a
100644
(file)
--- a/
test/jalview/gui/AppVarnaTest.java
+++ b/
test/jalview/gui/AppVarnaTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/FontChooserTest.java
b/test/jalview/gui/FontChooserTest.java
index
a18d257
..
4bfa7ea
100644
(file)
--- a/
test/jalview/gui/FontChooserTest.java
+++ b/
test/jalview/gui/FontChooserTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/HelpTest.java
b/test/jalview/gui/HelpTest.java
index
081fbee
..
bfc3c5a
100644
(file)
--- a/
test/jalview/gui/HelpTest.java
+++ b/
test/jalview/gui/HelpTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/JAL1353bugdemo.java
b/test/jalview/gui/JAL1353bugdemo.java
index
be4df37
..
f325f81
100644
(file)
--- a/
test/jalview/gui/JAL1353bugdemo.java
+++ b/
test/jalview/gui/JAL1353bugdemo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/JvSwingUtilsTest.java
b/test/jalview/gui/JvSwingUtilsTest.java
index
f2ba731
..
fc186e5
100644
(file)
--- a/
test/jalview/gui/JvSwingUtilsTest.java
+++ b/
test/jalview/gui/JvSwingUtilsTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/PDBSearchPanelTest.java
b/test/jalview/gui/PDBSearchPanelTest.java
index
31766bb
..
8a48dd5
100644
(file)
--- a/
test/jalview/gui/PDBSearchPanelTest.java
+++ b/
test/jalview/gui/PDBSearchPanelTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/PaintRefresherTest.java
b/test/jalview/gui/PaintRefresherTest.java
index
23e22ad
..
6c22aa1
100644
(file)
--- a/
test/jalview/gui/PaintRefresherTest.java
+++ b/
test/jalview/gui/PaintRefresherTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/PopupMenuTest.java
b/test/jalview/gui/PopupMenuTest.java
index
0ac7a7e
..
073d398
100644
(file)
--- a/
test/jalview/gui/PopupMenuTest.java
+++ b/
test/jalview/gui/PopupMenuTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/ProgressBarTest.java
b/test/jalview/gui/ProgressBarTest.java
index
cfbc62b
..
b9eaf19
100644
(file)
--- a/
test/jalview/gui/ProgressBarTest.java
+++ b/
test/jalview/gui/ProgressBarTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/SequenceRendererTest.java
b/test/jalview/gui/SequenceRendererTest.java
index
6597a8c
..
0c2009d
100644
(file)
--- a/
test/jalview/gui/SequenceRendererTest.java
+++ b/
test/jalview/gui/SequenceRendererTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/StructureChooserTest.java
b/test/jalview/gui/StructureChooserTest.java
index
947cb99
..
121765e
100644
(file)
--- a/
test/jalview/gui/StructureChooserTest.java
+++ b/
test/jalview/gui/StructureChooserTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/AnnotatedPDBFileInputTest.java
b/test/jalview/io/AnnotatedPDBFileInputTest.java
index
56e8d91
..
899a990
100644
(file)
--- a/
test/jalview/io/AnnotatedPDBFileInputTest.java
+++ b/
test/jalview/io/AnnotatedPDBFileInputTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/AnnotationFileIOTest.java
b/test/jalview/io/AnnotationFileIOTest.java
index
3d353ab
..
d457fdc
100644
(file)
--- a/
test/jalview/io/AnnotationFileIOTest.java
+++ b/
test/jalview/io/AnnotationFileIOTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/BioJsHTMLOutputTest.java
b/test/jalview/io/BioJsHTMLOutputTest.java
index
e884190
..
45519bc
100644
(file)
--- a/
test/jalview/io/BioJsHTMLOutputTest.java
+++ b/
test/jalview/io/BioJsHTMLOutputTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/FeaturesFileTest.java
b/test/jalview/io/FeaturesFileTest.java
index
520d1bb
..
d817c54
100644
(file)
--- a/
test/jalview/io/FeaturesFileTest.java
+++ b/
test/jalview/io/FeaturesFileTest.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
diff --git
a/test/jalview/io/FileIOTester.java
b/test/jalview/io/FileIOTester.java
index
f741e74
..
c1488e8
100644
(file)
--- a/
test/jalview/io/FileIOTester.java
+++ b/
test/jalview/io/FileIOTester.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/Gff3tests.java
b/test/jalview/io/Gff3tests.java
index
faa4d43
..
0011d34
100644
(file)
--- a/
test/jalview/io/Gff3tests.java
+++ b/
test/jalview/io/Gff3tests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/HtmlFileTest.java
b/test/jalview/io/HtmlFileTest.java
index
2c4e409
..
2f70410
100644
(file)
--- a/
test/jalview/io/HtmlFileTest.java
+++ b/
test/jalview/io/HtmlFileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/IdentifyFileTest.java
b/test/jalview/io/IdentifyFileTest.java
index
fbecc00
..
801d205
100644
(file)
--- a/
test/jalview/io/IdentifyFileTest.java
+++ b/
test/jalview/io/IdentifyFileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/JSONFileTest.java
b/test/jalview/io/JSONFileTest.java
index
bd7ec71
..
6e4458e
100644
(file)
--- a/
test/jalview/io/JSONFileTest.java
+++ b/
test/jalview/io/JSONFileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/Jalview2xmlTests.java
b/test/jalview/io/Jalview2xmlTests.java
index
459a13a
..
77d497f
100644
(file)
--- a/
test/jalview/io/Jalview2xmlTests.java
+++ b/
test/jalview/io/Jalview2xmlTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/JalviewExportPropertiesTests.java
b/test/jalview/io/JalviewExportPropertiesTests.java
index
6936f63
..
4ea85f4
100644
(file)
--- a/
test/jalview/io/JalviewExportPropertiesTests.java
+++ b/
test/jalview/io/JalviewExportPropertiesTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/NewickFileTests.java
b/test/jalview/io/NewickFileTests.java
index
60c2934
..
b73897f
100644
(file)
--- a/
test/jalview/io/NewickFileTests.java
+++ b/
test/jalview/io/NewickFileTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/PhylipFileTests.java
b/test/jalview/io/PhylipFileTests.java
index
236ed1c
..
8c58382
100644
(file)
--- a/
test/jalview/io/PhylipFileTests.java
+++ b/
test/jalview/io/PhylipFileTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/RNAMLfileTest.java
b/test/jalview/io/RNAMLfileTest.java
index
8384ecc
..
7663250
100644
(file)
--- a/
test/jalview/io/RNAMLfileTest.java
+++ b/
test/jalview/io/RNAMLfileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/StockholmFileTest.java
b/test/jalview/io/StockholmFileTest.java
index
cbcbdf9
..
2f62110
100644
(file)
--- a/
test/jalview/io/StockholmFileTest.java
+++ b/
test/jalview/io/StockholmFileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/TCoffeeScoreFileTest.java
b/test/jalview/io/TCoffeeScoreFileTest.java
index
20c52d7
..
dfe48ab
100644
(file)
--- a/
test/jalview/io/TCoffeeScoreFileTest.java
+++ b/
test/jalview/io/TCoffeeScoreFileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/schemes/DnaCodonTests.java
b/test/jalview/schemes/DnaCodonTests.java
index
07ae7bb
..
0dcebc2
100644
(file)
--- a/
test/jalview/schemes/DnaCodonTests.java
+++ b/
test/jalview/schemes/DnaCodonTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/schemes/ResiduePropertiesTest.java
b/test/jalview/schemes/ResiduePropertiesTest.java
index
1e5821b
..
2b21e92
100644
(file)
--- a/
test/jalview/schemes/ResiduePropertiesTest.java
+++ b/
test/jalview/schemes/ResiduePropertiesTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/schemes/ScoreMatrixPrinter.java
b/test/jalview/schemes/ScoreMatrixPrinter.java
index
33bbfb0
..
a1bf977
100644
(file)
--- a/
test/jalview/schemes/ScoreMatrixPrinter.java
+++ b/
test/jalview/schemes/ScoreMatrixPrinter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/structure/Mapping.java
b/test/jalview/structure/Mapping.java
index
d506a72
..
5397c48
100644
(file)
--- a/
test/jalview/structure/Mapping.java
+++ b/
test/jalview/structure/Mapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/structure/StructureSelectionManagerTest.java
b/test/jalview/structure/StructureSelectionManagerTest.java
index
b89dcbd
..
6d66f7c
100644
(file)
--- a/
test/jalview/structure/StructureSelectionManagerTest.java
+++ b/
test/jalview/structure/StructureSelectionManagerTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/structures/models/AAStructureBindingModelTest.java
b/test/jalview/structures/models/AAStructureBindingModelTest.java
index
9c5657e
..
63b7e6c
100644
(file)
--- a/
test/jalview/structures/models/AAStructureBindingModelTest.java
+++ b/
test/jalview/structures/models/AAStructureBindingModelTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/util/ColorUtilsTest.java
b/test/jalview/util/ColorUtilsTest.java
index
a00d79f
..
6474f26
100644
(file)
--- a/
test/jalview/util/ColorUtilsTest.java
+++ b/
test/jalview/util/ColorUtilsTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/util/ComparisonTest.java
b/test/jalview/util/ComparisonTest.java
index
05522dd
..
2426a72
100644
(file)
--- a/
test/jalview/util/ComparisonTest.java
+++ b/
test/jalview/util/ComparisonTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/util/DBRefUtilsTest.java
b/test/jalview/util/DBRefUtilsTest.java
index
4ced1a7
..
c998fa0
100644
(file)
--- a/
test/jalview/util/DBRefUtilsTest.java
+++ b/
test/jalview/util/DBRefUtilsTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/util/MapListTest.java
b/test/jalview/util/MapListTest.java
index
0142977
..
52a16e2
100644
(file)
--- a/
test/jalview/util/MapListTest.java
+++ b/
test/jalview/util/MapListTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/util/MappingUtilsTest.java
b/test/jalview/util/MappingUtilsTest.java
index
4116eaf
..
22fe568
100644
(file)
--- a/
test/jalview/util/MappingUtilsTest.java
+++ b/
test/jalview/util/MappingUtilsTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/util/ParseHtmlBodyAndLinksTest.java
b/test/jalview/util/ParseHtmlBodyAndLinksTest.java
index
2d5b4b3
..
57cbb71
100644
(file)
--- a/
test/jalview/util/ParseHtmlBodyAndLinksTest.java
+++ b/
test/jalview/util/ParseHtmlBodyAndLinksTest.java
@@
-1,6
+1,6
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
diff --git
a/test/jalview/util/QuickSortTest.java
b/test/jalview/util/QuickSortTest.java
index
4acb490
..
3bac7e9
100644
(file)
--- a/
test/jalview/util/QuickSortTest.java
+++ b/
test/jalview/util/QuickSortTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/util/ShiftListTest.java
b/test/jalview/util/ShiftListTest.java
index
e166c42
..
544d079
100644
(file)
--- a/
test/jalview/util/ShiftListTest.java
+++ b/
test/jalview/util/ShiftListTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/util/StringUtilsTest.java
b/test/jalview/util/StringUtilsTest.java
index
4fcae99
..
5956324
100644
(file)
--- a/
test/jalview/util/StringUtilsTest.java
+++ b/
test/jalview/util/StringUtilsTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/viewmodel/styles/ViewStyleTest.java
b/test/jalview/viewmodel/styles/ViewStyleTest.java
index
fcabb5c
..
c758082
100644
(file)
--- a/
test/jalview/viewmodel/styles/ViewStyleTest.java
+++ b/
test/jalview/viewmodel/styles/ViewStyleTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/PDBSequenceFetcherTest.java
b/test/jalview/ws/PDBSequenceFetcherTest.java
index
28d461d
..
a672ee4
100644
(file)
--- a/
test/jalview/ws/PDBSequenceFetcherTest.java
+++ b/
test/jalview/ws/PDBSequenceFetcherTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/dbsources/PDBRestClientTest.java
b/test/jalview/ws/dbsources/PDBRestClientTest.java
index
23e849c
..
679cfe4
100644
(file)
--- a/
test/jalview/ws/dbsources/PDBRestClientTest.java
+++ b/
test/jalview/ws/dbsources/PDBRestClientTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/dbsources/UniprotTest.java
b/test/jalview/ws/dbsources/UniprotTest.java
index
ec637fe
..
a3c6105
100644
(file)
--- a/
test/jalview/ws/dbsources/UniprotTest.java
+++ b/
test/jalview/ws/dbsources/UniprotTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/gui/Jws2ParamView.java
b/test/jalview/ws/gui/Jws2ParamView.java
index
71a9ca4
..
5f1132c
100644
(file)
--- a/
test/jalview/ws/gui/Jws2ParamView.java
+++ b/
test/jalview/ws/gui/Jws2ParamView.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
b/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
index
35d5ccd
..
71fc829
100644
(file)
--- a/
test/jalview/ws/jabaws/DisorderAnnotExportImport.java
+++ b/
test/jalview/ws/jabaws/DisorderAnnotExportImport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
b/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
index
e897b1d
..
6ea3339
100644
(file)
--- a/
test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
+++ b/
test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
index
6f78f04
..
d5bca58
100644
(file)
--- a/
test/jalview/ws/jabaws/JpredJabaStructExportImport.java
+++ b/
test/jalview/ws/jabaws/JpredJabaStructExportImport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/jabaws/MinJabawsClientTests.java
b/test/jalview/ws/jabaws/MinJabawsClientTests.java
index
5a6289d
..
e1d1478
100644
(file)
--- a/
test/jalview/ws/jabaws/MinJabawsClientTests.java
+++ b/
test/jalview/ws/jabaws/MinJabawsClientTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/jabaws/RNAStructExportImport.java
b/test/jalview/ws/jabaws/RNAStructExportImport.java
index
745e37d
..
58bcb44
100644
(file)
--- a/
test/jalview/ws/jabaws/RNAStructExportImport.java
+++ b/
test/jalview/ws/jabaws/RNAStructExportImport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/jws2/ParameterUtilsTest.java
b/test/jalview/ws/jws2/ParameterUtilsTest.java
index
99a6d70
..
efb2d37
100644
(file)
--- a/
test/jalview/ws/jws2/ParameterUtilsTest.java
+++ b/
test/jalview/ws/jws2/ParameterUtilsTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/rest/RestClientTest.java
b/test/jalview/ws/rest/RestClientTest.java
index
4c55012
..
519f55c
100644
(file)
--- a/
test/jalview/ws/rest/RestClientTest.java
+++ b/
test/jalview/ws/rest/RestClientTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/rest/ShmmrRSBSService.java
b/test/jalview/ws/rest/ShmmrRSBSService.java
index
9d18018
..
f0f44d1
100644
(file)
--- a/
test/jalview/ws/rest/ShmmrRSBSService.java
+++ b/
test/jalview/ws/rest/ShmmrRSBSService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/seqfetcher/DasSequenceFetcher.java
b/test/jalview/ws/seqfetcher/DasSequenceFetcher.java
index
2696081
..
b128f53
100644
(file)
--- a/
test/jalview/ws/seqfetcher/DasSequenceFetcher.java
+++ b/
test/jalview/ws/seqfetcher/DasSequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
index
f17ac43
..
2927207
100644
(file)
--- a/
test/jalview/ws/seqfetcher/DbRefFetcherTest.java
+++ b/
test/jalview/ws/seqfetcher/DbRefFetcherTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/InstallAnywhere/Jalview.iap_xml
b/utils/InstallAnywhere/Jalview.iap_xml
index
cd9987c
..
48949a0
100755
(executable)
--- a/
utils/InstallAnywhere/Jalview.iap_xml
+++ b/
utils/InstallAnywhere/Jalview.iap_xml
@@
-1,8
+1,8
@@
<?xml version="1.0" encoding="UTF-8"?>
<!-- This script was automatically generated using InstallAnywhere 2014 Professional, Build 4783
STATUS: Fully Functional LICENSED Edition
<?xml version="1.0" encoding="UTF-8"?>
<!-- This script was automatically generated using InstallAnywhere 2014 Professional, Build 4783
STATUS: Fully Functional LICENSED Edition
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
diff --git
a/utils/InstallAnywhere/jalview_buildinstaller.xml
b/utils/InstallAnywhere/jalview_buildinstaller.xml
index
b14017f
..
b8b0ba4
100644
(file)
--- a/
utils/InstallAnywhere/jalview_buildinstaller.xml
+++ b/
utils/InstallAnywhere/jalview_buildinstaller.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/JettyExamplesDir.java
b/utils/JettyExamplesDir.java
index
76375d6
..
006c9be
100644
(file)
--- a/
utils/JettyExamplesDir.java
+++ b/
utils/JettyExamplesDir.java
@@
-1,6
+1,6
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
diff --git
a/utils/eclipse/JalviewCodeStyle.xml
b/utils/eclipse/JalviewCodeStyle.xml
index
df19c4b
..
9965830
100644
(file)
--- a/
utils/eclipse/JalviewCodeStyle.xml
+++ b/
utils/eclipse/JalviewCodeStyle.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!--
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/getJavaVersion.java
b/utils/getJavaVersion.java
index
5502baa
..
d7877c1
100644
(file)
--- a/
utils/getJavaVersion.java
+++ b/
utils/getJavaVersion.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/gff2annot.pl
b/utils/gff2annot.pl
index
fa8a0ac
..
2326573
100755
(executable)
--- a/
utils/gff2annot.pl
+++ b/
utils/gff2annot.pl
@@
-1,6
+1,6
@@
#!/usr/bin/perl
##
#!/usr/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/utils/help2Website.java
b/utils/help2Website.java
index
2161622
..
a57df1a
100755
(executable)
--- a/
utils/help2Website.java
+++ b/
utils/help2Website.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jarunsigner.pl
b/utils/jarunsigner.pl
index
4f829bb
..
86b2e29
100755
(executable)
--- a/
utils/jarunsigner.pl
+++ b/
utils/jarunsigner.pl
@@
-1,6
+1,6
@@
#!/usr/bin/perl
##
#!/usr/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/utils/patchGt.pl
b/utils/patchGt.pl
index
0ac9f2c
..
503b909
100644
(file)
--- a/
utils/patchGt.pl
+++ b/
utils/patchGt.pl
@@
-1,6
+1,6
@@
#!/bin/perl
##
#!/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/utils/splitstockholm.pl
b/utils/splitstockholm.pl
index
dd13a52
..
99a8dc2
100644
(file)
--- a/
utils/splitstockholm.pl
+++ b/
utils/splitstockholm.pl
@@
-1,6
+1,6
@@
#!/usr/bin/perl
##
#!/usr/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2015 The Jalview Authors
#
# This file is part of Jalview.