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Merge branch 'develop' into groovy/JAL-2074_upgradeto2.4.4
[jalview.git] / examples /
2016-04-25 tcofoegbudevelop merge tree | commitdiff
2016-04-25 tcofoegbuJAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search tree | commitdiff
2016-04-22 gmungocJAL-2068 framework and example scripts for pluggable... tree | commitdiff
2016-04-11 tcofoegbuRestored auto-deleted file from commit: ad54c1ae5bc1b93... tree | commitdiff
2016-03-21 tcofoegbumerge tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-01-26 tcofoegbudevelop merge tree | commitdiff
2016-01-21 tcofoegbuJAL-1986 JAL-1996 separated out appletDeploment page... tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-10-08 Jim ProcterJAL-1684 updated fragment alignment for example and... tree | commitdiff
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc tree | commitdiff
2015-10-05 Jim ProcterJAL-1684 trimmed proteins to just those sequences that... tree | commitdiff
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... tree | commitdiff
2015-09-22 gmungocJAL-1859 adding "set hoverDelay 0.001;" to Jmol startup... tree | commitdiff
2015-09-16 gmungocJAL-1684 typo correction tree | commitdiff
2015-09-16 gmungocJAL-1859 working variable to aid inspection in debugger tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for groovy files tree | commitdiff
2015-09-10 Jim ProcterJAL-1684 updated example to just a fragment of the... tree | commitdiff
2015-09-09 gmungocJAL-857 debug=true for Jmol example diagnosis tree | commitdiff
2015-09-09 Jim ProcterJAL-1684 use Muscle protein alignment as guide for... tree | commitdiff
2015-09-09 Jim ProcterJAL-1684 clarification of which alignment will be used... tree | commitdiff
2015-09-09 Jim ProcterJAL-1684 aligned proteins and citation for for Estrogen... tree | commitdiff
2015-09-08 Jim ProcterJAL-1645 update appletParameters docs for 2.9 tree | commitdiff
2015-09-08 Jim ProcterJAL-1626 added missing gap character and fixed typo... tree | commitdiff
2015-09-08 Jim ProcterJAL-1551 crlf change tree | commitdiff
2015-09-08 tcofoegbucommited jmol/Jmol2.js diff with origin shows no change... tree | commitdiff
2015-09-08 tcofoegbuJAL-857 revert show equivalent decoration link tree | commitdiff
2015-09-08 tcofoegbumerge tree | commitdiff
2015-09-08 tcofoegbuJAL-857 removed 'development' as active link and added... tree | commitdiff
2015-09-08 gmungocJAL-1859 reverted to signed JalviewApplet.jar! tree | commitdiff
2015-09-08 gmungocJAL-1859 Jmol applet black background; fix _jvmols... tree | commitdiff
2015-09-07 gmungocJAL-1859 Jmol linked applet updated to use Jmol2.js tree | commitdiff
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files... tree | commitdiff
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files... tree | commitdiff
2015-09-04 gmungocJAL-1859 jmolFindTarget not JmolFindTarget tree | commitdiff
2015-09-04 gmungocJAL-1859 embedded Jmol applet example updated for Jmol... tree | commitdiff
2015-09-03 tcofoegbuJAL-1859 JAL-857 house keeping tree | commitdiff
2015-09-03 tcofoegbuJAL-1859 JAL-857 updated all reference of JmolApplet... tree | commitdiff
2015-09-03 tcofoegbuanother merge from develop tree | commitdiff
2015-09-03 tcofoegbuupdated examples index page tree | commitdiff
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html... tree | commitdiff
2015-09-03 tcofoegbuJAL-857 increased callback timeout to accomodated apple... tree | commitdiff
2015-09-03 tcofoegbumerge from develop tree | commitdiff
2015-08-10 Jim ProcterMerge branch 'release/2_9_documentation' into develop tree | commitdiff
2015-08-04 tcofoegbuJAL-1816 fixed bug in identify file preventing it from... tree | commitdiff
2015-08-04 tcofoegbuJAL-1788 updated biojson docs tree | commitdiff
2015-07-28 tcofoegbuJAL-857 converted jalview applet launch scripts to... tree | commitdiff
2015-07-28 tcofoegbuJAL-857 merge from develop tree | commitdiff
2015-07-24 tcofoegbuJAL-857 javascipt housekeeping tree | commitdiff
2015-07-24 tcofoegbuJAL-857 modified javascipt to read browser url on page... tree | commitdiff
2015-07-24 tcofoegbuJAL-857 disabled javascript page state storage in cookies tree | commitdiff
2015-07-23 tcofoegbuJAL-1805 modified test setup's so the are ran for group... tree | commitdiff
2015-07-23 tcofoegbuJAL-1819 Test cases for Identify file tree | commitdiff
2015-07-09 tcofoegbuJAL-1769 added test for commandline input operations tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-08 tcofoegbuJAL-1641 biojson documentation with docson tree | commitdiff
2015-07-06 tcofoegbuJAL-1641 added json schema for jalview JSON model,... tree | commitdiff
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring tree | commitdiff
2015-06-30 Jim ProcterJAL-1682 JAL-1645 remove references to 2.8.3 tree | commitdiff
2015-06-25 tcofoegbuJAL-857 updated examples directory web pages to be... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 JAL-1140 added RNAML example alignment... tree | commitdiff
2015-06-06 Jim ProcterJAL-653 test and testdata for importing GFF3 file with... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 refactored exonerate full output to separate... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 JAL-845 test to check exonerate cDNA-Protein... tree | commitdiff
2015-06-02 tcofoegbuJAL-1641 updated examples/applets.html tree | commitdiff
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... tree | commitdiff
2015-04-13 gmungocJAL-1695 enableSplitFrame=true for applet example tree | commitdiff
2015-04-08 gmungocJAL-1684 adjusting parameters for split frame applet... tree | commitdiff
2015-04-08 gmungocJAL-1690 scaleProteinAsCdna new applet parameter documented tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-26 gmungocJAL-1665 getSequenceFeatures; Desktop.getAlignFrames... tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-03-05 Jim ProcterJAL-1213 JAL-1395 add Jmol to JalviewLite classpath... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files... tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into... tree | commitdiff
2014-12-01 Jim Procterfile for JAL-1268 jalview.io.Jalview2xmlTests.testTCoff... tree | commitdiff
2014-11-14 Charles OfoegbuMerge branch 'features/JAL-1541_BioJsMSAViewer-export... tree | commitdiff
2014-11-14 Charles OfoegbuHouse keeping tree | commitdiff
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... tree | commitdiff
2014-11-12 Jim ProcterJAL-674 new tests and deprecated tests for PDB mapping... tree | commitdiff
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe... tree | commitdiff
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to use class loader while... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 crlf changes tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support tree | commitdiff
2014-09-15 gmungocJAL-1542 script to show aligned positions of selected... tree | commitdiff
2014-09-12 gmungocJAL-1516 handle null annotations tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1516 Annotation row score output script for jalview... tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-28 Jim ProcterJAL-1509 use local deployJava tree | commitdiff
2014-05-28 Jim Procterfix for JAL-1510 - workaround for IE9 tree | commitdiff
2014-05-27 Jim ProcterJAL-1509 update deployJava.js from java.com/js/deployJa... tree | commitdiff
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