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[jalview.git] / src / jalview / analysis / Finder.java

2020-08-10	gmungoc	JAL-3490 match count independent of contiguous matches... patch/Release_2_11_1_Branch_patch_JAL-3490	blob \| commitdiff
2019-12-12	gmungoc	JAL-3490 unit test for ignore hidden regions with selec...	blob \| commitdiff \| diff to current
2019-12-11	gmungoc	JAL-3490 tests for skip hidden regions (and a bug fix)	blob \| commitdiff \| diff to current
2019-12-11	gmungoc	JAL-3490 revised layout and search algorithm (more...	blob \| commitdiff \| diff to current
2019-11-29	gmungoc	JAL-3490 Finder match across entirely gapped hidden...	blob \| commitdiff \| diff to current
2018-03-14	gmungoc	JAL-2933 pass viewport in Finder constructor, find... bug/JAL-2839findWithHidden	blob \| commitdiff \| diff to current
2018-03-14	gmungoc	JAL-2933 gui and applet Finder hold a FinderI per viewport	blob \| commitdiff \| diff to current
2018-03-14	gmungoc	JAL-2839 refactored out getNextVisibleSequenceRegion	blob \| commitdiff \| diff to current
2018-03-13	gmungoc	JAL-2839 refactored analysis.Finder and tests	blob \| commitdiff \| diff to current
2018-03-09	gmungoc	JAL-2839 Finder refactoring prior to fixing the defect	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2016-11-03	gmungoc	JAL-2310 don't double-count sequence matches; code...	blob \| commitdiff \| diff to current
2016-11-02	Jim Procter	JAL-1738 JAL-345 fix for JAL-2302 only report Matches...	blob \| commitdiff \| diff to current
2016-10-28	Jim Procter	JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-02-02	Charles Ofoegbu	Merge branch 'bug/JAL-1644_Finder-logic-improvement...	blob \| commitdiff \| diff to current
2015-02-02	Charles Ofoegbu	JAL-1644 added null check for sequence description...	blob \| commitdiff \| diff to current
2015-02-02	Charles Ofoegbu	Merge commit	blob \| commitdiff \| diff to current
2015-02-02	Charles Ofoegbu	JAL-1644 revised Finder's implementation to use a flag...	blob \| commitdiff \| diff to current
2015-02-02	Charles Ofoegbu	Merge branch 'bug/JAL-1644_Finder-logic-improvement...	blob \| commitdiff \| diff to current
2015-02-02	Charles Ofoegbu	JAL-1644 improvment of finder logic to include the...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-06-13	Jim Procter	Merge branch 'Release_2_8_2_Branch' into JAL-1483_featu...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1481 relevant todo re warning user for broken regex	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-02-27	jprocter	patch for JAL-780	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-28	jprocter	find incrementally searches ID then subsequence matches.	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-12-01	jprocter	match case switch should work for both sequence ID...	blob \| commitdiff \| diff to current
2008-11-12	jprocter	avoid exception if search returns valid object but...	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-01-29	jprocter	reinstated proper case insensitive searching for both...	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-01-25	amwaterhouse	1.1 enabled	blob \| commitdiff \| diff to current
2007-01-23	amwaterhouse	Hidden representatives moved from sequence to viewport	blob \| commitdiff \| diff to current
2007-01-23	jprocter	refactoring (added seqIndex/resIndex state for incremen...	blob \| commitdiff \| diff to current
2007-01-23	jprocter	refactored search algorithm from gui classes	blob \| commitdiff \| diff to current

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