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JAL-2045 JAL-2047 improvement for sorting PDB quality measure numerically, and improv...
[jalview.git] / src / jalview / appletgui /
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... tree | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-11 gmungocJAL-1989 additional ways to 'mirror' show/hide columns... tree | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... tree | commitdiff
2015-12-22 gmungocJAL-653 set showSequenceFeatures=true on loading a... tree | commitdiff
2015-12-09 Jim ProcterJAL-1982 hotfix to prevent NPE with applet launch on... tree | commitdiff
2015-11-21 gmungocJAL-1968 remove feature links tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-11-11 tcofoegbumerge tree | commitdiff
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge... tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting tree | commitdiff
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc tree | commitdiff
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent... tree | commitdiff
2015-09-28 tcofoegbumerge tree | commitdiff
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... tree | commitdiff
2015-09-28 gmungocJAL-1909 repaint complementary alignment panel after... tree | commitdiff
2015-09-22 tcofoegbuJAL-1774 house keeping tree | commitdiff
2015-09-21 tcofoegbumerge tree | commitdiff
2015-09-21 tcofoegbuJAL-1774 modifed warning dialog to use JVDialog rather... tree | commitdiff
2015-09-21 gmungocJAL-1152 set initial state of show alignment/sequence... tree | commitdiff
2015-09-18 tcofoegbuJAL-1774 JAL-1506 revised implementaion for clear highl... tree | commitdiff
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort... tree | commitdiff
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... tree | commitdiff
2015-09-14 gmungocJAL-1684 align added alignment to match original in... tree | commitdiff
2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference... tree | commitdiff
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu... tree | commitdiff
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... tree | commitdiff
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour... tree | commitdiff
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates... tree | commitdiff
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens... tree | commitdiff
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead... tree | commitdiff
2015-08-26 gmungocJAL-1840 correct setting status bar for structure mouseover tree | commitdiff
2015-08-26 gmungocJAL-1759 added check for null (console 'history') tree | commitdiff
2015-08-26 gmungocFix to use correct resource bundle entry tree | commitdiff
2015-08-25 gmungocJAL-1674 more correct status bars in splitframe mouseov... tree | commitdiff
2015-08-24 gmungocremove mentions of non-functional RNAInteraction colour... tree | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop tree | commitdiff
2015-07-23 Jim ProcterJAL-1551 JAL-1819 formatting/imports tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-06 gmungocJAL-1799 tweaked calculation for applet, now showing... tree | commitdiff
2015-07-06 gmungocJAL-1799 equivalent logic in applet tree | commitdiff
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate tree | commitdiff
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics tree | commitdiff
2015-06-29 gmungocJAL-1799 adjusted annotation height calculation tree | commitdiff
2015-06-26 gmungocJAL-1759 changed to non-deprecated Viewer.renderScreenI... tree | commitdiff
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate tree | commitdiff
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11 tree | commitdiff
2015-06-24 Jim ProcterJAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 dropped unnecessary refs tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 minimise call rate now av.hasHiddenRow... tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and... tree | commitdiff
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports tree | commitdiff
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into... tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments tree | commitdiff
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile tree | commitdiff
2015-06-12 tcofoegbuJAL-1641 refactor tree | commitdiff
2015-06-10 tcofoegbuJAL-1641 updated applet version tree | commitdiff
2015-06-05 tcofoegbuMerge branch 'bug/JAL-1760_restore-hidden-seqs' into... tree | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... tree | commitdiff
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code... tree | commitdiff
2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name... tree | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... tree | commitdiff
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package tree | commitdiff
2015-05-19 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop tree | commitdiff
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... tree | commitdiff
2015-05-18 gmungocJAL-1663 detect tab out of RGB value; correct field... tree | commitdiff
2015-05-18 gmungocJAL-1663 apply new colour correctly; source formatting tree | commitdiff
2015-05-01 gmungocJAL-1690 refining 'copy format from' as applied to... tree | commitdiff
2015-05-01 gmungocJAL-1690 unused fields removed tree | commitdiff
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit... tree | commitdiff
2015-04-13 gmungocJAL-1690 show 'scale protein' in protein _and_ dna... tree | commitdiff
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled tree | commitdiff
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5... tree | commitdiff
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences... tree | commitdiff
2015-04-01 gmungocJAL-1264 reinstate Show annotations menu item tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-02-27 Jim ProcterJAL-1678 - patch to make sure we only compare positions... tree | commitdiff
2015-02-27 Jim Procterfix for JAL-1678 tree | commitdiff
2015-02-02 Charles OfoegbuMerge commit tree | commitdiff
2015-02-02 Charles OfoegbuJAL-1644 revised Finder's implementation to use a flag... tree | commitdiff
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... tree | commitdiff
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... tree | commitdiff
2015-01-23 Charles OfoegbuJAL-1553 added help documentation and updated Annotatio... features/JAL-1553_improvement-select-column-by-annotation-row-query-interface tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 crlf changes tree | commitdiff
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method tree | commitdiff
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