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JAL-4020 Added search for PyMOLWinWithConsole.bat (and PyMOLWin.exe) in likely places...
[jalview.git] / src / jalview / bin /
2022-03-08 Jim ProcterJAL-3746 apply copyright to source tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse... tree | commitdiff
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2 tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3814 NONEWS property tree | commitdiff
2022-03-02 Jim ProcterMerge branch 'benreview/JAL-3691_for_2_11_2_getdownrebu... tree | commitdiff
2022-02-17 Jim ProcterJAL-3959 add key retrieval urls that support CORS neede... tree | commitdiff
2022-02-17 Jim ProcterJAL-3691 patch toUpper/toLower to use Locale.ROOT for... tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 read ~/.jalview_properties before initialising... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... tree | commitdiff
2022-02-04 Ben SoaresJAL-3949 An attempt at converting to Log4j 2 -- no... tree | commitdiff
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal... tree | commitdiff
2022-01-10 Ben SoaresJAL-3937 enable AIA download of intermediate certificat... tree | commitdiff
2022-01-10 Ben SoaresJAL-3937 enable AIA download of intermediate certificat... tree | commitdiff
2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration tree | commitdiff
2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to... tree | commitdiff
2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration tree | commitdiff
2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to... tree | commitdiff
2021-12-14 Ben SoaresJAL-3933 updated log4j and slf4j jars with log4j1.2... tree | commitdiff
2021-12-14 Ben SoaresJAL-3933 Updated log4j jars with log4j-2.16.0 and compa... tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... tree | commitdiff
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of... tree | commitdiff
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more... tree | commitdiff
2021-04-19 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor... tree | commitdiff
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor... tree | commitdiff
2021-03-25 Ben SoaresJAL-3633 refactored/simplified LaunchUtils code tree | commitdiff
2021-03-20 Ben SoaresJAL-3503 Changed decimal display of memory in Prefences tree | commitdiff
2021-03-19 Ben SoaresJAL-3503 Added a Startup tab in Preferences, with gui... tree | commitdiff
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences... tree | commitdiff
2021-02-05 Jim ProcterJAL-3813 NOIDENTIFIERSSERVICE preference disables jalvi... tree | commitdiff
2021-02-05 Jim ProcterJAL-3812 new argument ‘-nohtmltemplates’ and user prefe... tree | commitdiff
2021-02-05 Jim ProcterJAL-3811 document SHOW_JWS2_SERVICES user preference... tree | commitdiff
2021-02-05 Jim ProcterJAL-3814 NONEWS property tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215 tree | commitdiff
2020-12-14 Ben SoaresJAL-3594 Allow setting of getdownappbase and getdowndis... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Test for remote release build_properties file... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... tree | commitdiff
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code... tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... tree | commitdiff
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... tree | commitdiff
2020-12-08 Ben SoaresJAL-3594 Change main window title tree | commitdiff
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... tree | commitdiff
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Refactoring a bit of jalview.bin... tree | commitdiff
2020-12-01 Ben SoaresJAL-3660 Fix for specified output format when using... tree | commitdiff
2020-12-01 Ben SoaresJAL-3530 Added a -nowebservicediscovery command line... tree | commitdiff
2020-11-27 Ben SoaresJAL-3660 Fix for specified output format when using... tree | commitdiff
2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to... tree | commitdiff
2020-11-13 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with... tree | commitdiff
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 formatting save after cherry-picks tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 Report when scale setting used. tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI.... tree | commitdiff
2020-11-06 soaresJAL-3609 corrected maxdimension to mindimension. Adjust... tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 removed debugging prints tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 changed property names to something more palat... tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 system properties to force a scale, or automat... tree | commitdiff
2020-11-06 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly... tree | commitdiff
2020-11-05 Ben SoaresJAL-3608 cherry pick of 92cb745e7 tree | commitdiff
2020-09-24 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to... tree | commitdiff
2020-09-23 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... tree | commitdiff
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls tree | commitdiff
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... tree | commitdiff
2020-09-17 Jim ProcterJAL-3750 parse protocol before checking if argument... tree | commitdiff
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... tree | commitdiff
2020-09-02 Ben SoaresJAL-3280 Test for remote release build_properties file... tree | commitdiff
2020-09-01 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... tree | commitdiff
2020-08-31 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... tree | commitdiff
2020-08-25 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3561_JAL-3660_fileformatexport_... tree | commitdiff
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests... tree | commitdiff
2020-08-12 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 tree | commitdiff
2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL... tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... tree | commitdiff
2020-07-08 Ben SoaresMerge branch 'task/JAL-3609_HiDPI_support_in_java'... tree | commitdiff
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 tree | commitdiff
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 tree | commitdiff
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error tree | commitdiff
2020-07-07 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... tree | commitdiff
2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_... tree | commitdiff
2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... tree | commitdiff
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