source.jalview.org Git - jalview.git/history - src/jalview/gui/AlignFrame.java

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[jalview.git] / src / jalview / gui / AlignFrame.java

2023-02-16	James Procter	Merge branch 'features/r2_11_2_alphafold/JAL-629' into...	blob \| commitdiff
2023-02-13	James Procter	Merge branch 'develop' into feature/JAL-1713_overviewIn...	blob \| commitdiff \| diff to current
2023-02-03	Ben Soares	JAL-629 Fasta sequence id reading whitespace fix. Flexi...	blob \| commitdiff \| diff to current
2023-02-03	James Procter	Merge branch 'develop' into features/r2_11_2_alphafold...	blob \| commitdiff \| diff to current
2023-01-31	James Procter	JAL-1713 update from Jalview 2.11.3 develop	blob \| commitdiff \| diff to current
2022-11-09	Ben Soares	Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...	blob \| commitdiff \| diff to current
2022-11-09	Ben Soares	JAL-3416 Remove all JFrame/JInternalFrame icons (set...	blob \| commitdiff \| diff to current
2022-11-04	Ben Soares	JAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...	blob \| commitdiff \| diff to current
2022-11-03	Ben Soares	JAL-3416 File Chooser iconified, JvOptionPanes iconifie...	blob \| commitdiff \| diff to current
2022-11-03	Ben Soares	JAL-3416 Start to add JInternalFrame icons (to replace...	blob \| commitdiff \| diff to current
2022-10-24	Ben Soares	JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...	blob \| commitdiff \| diff to current
2022-09-26	Ben Soares	JAL-1988 JAL-3772 linked undostack to saved changes...	blob \| commitdiff \| diff to current
2022-09-16	Jim Procter	JAL-4062 copy highlighted region docs, new Alignment...	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2022-03-04	Jim Procter	JAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2022-02-07	Jim Procter	Merge branch 'feature/JAL-1713_overviewInProject' into...	blob \| commitdiff \| diff to current
2022-02-07	Jim Procter	JAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit... bug/JAL-3785autoOverviewTitle	blob \| commitdiff \| diff to current
2021-09-21	Ben Soares	JAL-3691 automatic insertion of Locale.ROOT to toUpperC...	blob \| commitdiff \| diff to current
2021-09-21	Jim Procter	Merge branch 'doc/JAL-3746_Release_2_11_2' into develop	blob \| commitdiff \| diff to current
2021-09-16	Ben Soares	JAL-3774 combined changes from bug/JAL-3774_splitFrameF...	blob \| commitdiff \| diff to current
2021-09-15	Jim Procter	JAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...	blob \| commitdiff \| diff to current
2021-02-05	Jim Procter	JAL-3811 document SHOW_JWS2_SERVICES user preference...	blob \| commitdiff \| diff to current
2020-12-12	gmungoc	JAL-1713 JAL-3119 JAL-3785 refactored get/set Overview...	blob \| commitdiff \| diff to current
2020-12-11	gmungoc	JAL-3785 set full title on automatically opened Overvie...	blob \| commitdiff \| diff to current
2020-12-11	gmungoc	JAL-1713 fix typo; overview in project with open overvi...	blob \| commitdiff \| diff to current
2020-12-10	gmungoc	JAL-3784 null the right overview reference when it...	blob \| commitdiff \| diff to current
2020-12-10	gmungoc	JAL-3119 include view name (if any) in Overview title	blob \| commitdiff \| diff to current
2020-12-10	gmungoc	JAL-1713 refactorings to allow save/restore Overview...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3775 Eclipse re-formatting commit	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3628 Error when saving alert box has been moved...	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...	blob \| commitdiff \| diff to current
2020-11-10	Ben Soares	JAL-3628 Fixed oddly worded and non-formatted error...	blob \| commitdiff \| diff to current
2020-11-10	Ben Soares	JAL-3628 Even more Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-11-10	Ben Soares	JAL-3628 More Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-09-23	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-09-21	Jim Procter	Merge branch 'merge_review/JAL-3490_2_11_2_develop...	blob \| commitdiff \| diff to current
2020-08-31	Jim Procter	JAL-3732 - sequences can be moved up/down in cursor...	blob \| commitdiff \| diff to current
2020-08-31	Jim Procter	JAL-3732 - sequences can be moved up/down in cursor...	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	JAL-3490 merged with 2.11.2 develop	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	Merge branch 'patch/Release_2_11_1_Branch_patch_JAL...	blob \| commitdiff \| diff to current
2020-08-12	Ben Soares	JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...	blob \| commitdiff \| diff to current
2020-07-08	Ben Soares	Merge branch 'releases/Release_2_11_1_Branch' into...	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3628 Fixed oddly worded and non-formatted error...	blob \| commitdiff \| diff to current
2020-07-06	Ben Soares	JAL-3628 Even more Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-07-04	Jim Procter	JAL-3638 don’t move cursor to next gap after moving...	blob \| commitdiff \| diff to current
2020-07-04	Jim Procter	JAL-3680 check whether a sequence selection exists...	blob \| commitdiff \| diff to current
2020-07-04	Jim Procter	JAL-3638 shift+arrow keys in cursor mode jumps cursor...	blob \| commitdiff \| diff to current
2020-07-04	Ben Soares	JAL-3628 More Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	JAL-3493 clear search highlights when escape/deselect all	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	JAL-3493 clear search highlights when escape/deselect all	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...	blob \| commitdiff \| diff to current
2020-05-19	gmungoc	Merge branch 'develop' into feature/JAL-3551Pymol	blob \| commitdiff \| diff to current
2020-04-21	gmungoc	JAL-3603 load annotation file from RELATIVE_URL in...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-03-09	gmungoc	Merge branch 'develop' into feature/JAL-2422ChimeraX	blob \| commitdiff \| diff to current
2020-02-21	Jim Procter	JAL-3186 avoid repainting twice in splitframe	blob \| commitdiff \| diff to current
2020-02-21	Jim Procter	Merge branch 'develop' into features/JAL-3187_uitweaks	blob \| commitdiff \| diff to current
2020-02-20	gmungoc	JAL-3187 repaint complement after loading on features	blob \| commitdiff \| diff to current
2020-02-19	Jim Procter	JAL-3187 JAL-2764 close feature settings when parent...	blob \| commitdiff \| diff to current
2020-02-18	Jim Procter	JAl-3187 JAL-3535 JAL-3534 update open feature settings...	blob \| commitdiff \| diff to current
2020-02-17	Jim Procter	JAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...	blob \| commitdiff \| diff to current
2020-02-17	Jim Procter	JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...	blob \| commitdiff \| diff to current
2020-02-12	Jim Procter	JAL-3187 view controller UI api method to show feature...	blob \| commitdiff \| diff to current
2020-02-04	gmungoc	JAL-2422 pull up refactoring in preparation for Chimera...	blob \| commitdiff \| diff to current
2019-12-11	gmungoc	JAL-3490 revised layout and search algorithm (more...	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-06-24	Jim Procter	JAL-3330 merge styles onto originating view after fetch...	blob \| commitdiff \| diff to current
2019-05-28	Ben Soares	JAL-1988 Some TEST code accidentally left in now remove...	blob \| commitdiff \| diff to current
2019-04-18	hansonr	Corrects incorrect calls to ViewportRanges.setEndSeq()	blob \| commitdiff \| diff to current
2019-04-16	hansonr	caching of DnD files dropped	blob \| commitdiff \| diff to current
2019-04-11	Jim Procter	Merge branch 'develop' into task/JAL-3130_Java_11_inves...	blob \| commitdiff \| diff to current
2019-04-03	hansonr	replacing @j2sNative with @j2sIgnore where appropriate...	blob \| commitdiff \| diff to current
2019-03-31	hansonr	clean up implicit object refs	blob \| commitdiff \| diff to current
2019-03-27	hansonr	isJS cleanup	blob \| commitdiff \| diff to current
2019-03-23	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2019-03-23	gmungoc	JAL-1889 explicit recalc of geometry for scale left... bug/JAL-1889serverTestSuite	blob \| commitdiff \| diff to current
2019-03-20	Ben Soares	JAL-3130 Lots of deprecation fixes. See utils/deprecat...	blob \| commitdiff \| diff to current
2019-03-20	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2019-03-20	gmungoc	JAL-3093 fine tuning of SeqPanel tooltip	blob \| commitdiff \| diff to current
2019-03-19	Ben Soares	JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...	blob \| commitdiff \| diff to current
2019-03-14	gmungoc	JAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	JAL-3141 fix up merge artefact so BackupFilesTest passes	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	blob \| commitdiff \| diff to current
2019-03-07	gmungoc	Merge branch 'feature/JAL-3180colourAnnotationMenu...	blob \| commitdiff \| diff to current
2019-03-07	gmungoc	JAL-2250 default Apply Colour to All Groups selected	blob \| commitdiff \| diff to current
2019-03-05	gmungoc	Merge remote-tracking branch 'origin/features/JAL-2620a...	blob \| commitdiff \| diff to current
2019-03-04	gmungoc	Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...	blob \| commitdiff \| diff to current
2019-03-01	gmungoc	Merge branch 'feature/JAL-3093wrappedModeTooltips'...	blob \| commitdiff \| diff to current
2019-03-01	gmungoc	Merge branch 'bug/JAL-3158selectionBroadcasts' into...	blob \| commitdiff \| diff to current
2019-02-28	gmungoc	Merge remote-tracking branch 'origin/feature/JAL-3141_b...	blob \| commitdiff \| diff to current
2019-02-28	Jim Procter	Merge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211	blob \| commitdiff \| diff to current
2019-02-24	gmungoc	JAL-3198 SequenceGroup 'bulk constructor' without dupli...	blob \| commitdiff \| diff to current
2019-02-22	gmungoc	JAL-2915 don't recalculate Overview on scroll to positi...	blob \| commitdiff \| diff to current
2019-02-05	gmungoc	JAL-3048 JS-compatible confirm dialog on delete all	blob \| commitdiff \| diff to current
2019-01-26	hansonr	Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...	blob \| commitdiff \| diff to current
2019-01-18	Jim Procter	Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...	blob \| commitdiff \| diff to current
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