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[jalview.git] / src / jalview / gui / AlignFrame.java

2022-12-14	Jim Procter	Merge branch 'develop' into update_212_Dec_merge_with_2...	blob \| commitdiff
2022-12-13	Jim Procter	Merge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl...	blob \| commitdiff \| diff to current
2022-11-21	Jim Procter	Merge commit 'alpha/update_2_12_for_2_11_2_series_merge...	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2022-03-04	Jim Procter	JAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2021-09-21	Ben Soares	JAL-3691 automatic insertion of Locale.ROOT to toUpperC...	blob \| commitdiff \| diff to current
2021-09-21	Jim Procter	Merge branch 'doc/JAL-3746_Release_2_11_2' into develop	blob \| commitdiff \| diff to current
2021-09-16	Ben Soares	JAL-3774 combined changes from bug/JAL-3774_splitFrameF...	blob \| commitdiff \| diff to current
2021-09-15	Jim Procter	JAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...	blob \| commitdiff \| diff to current
2021-07-25	Jim Procter	JAL-3848 reinstate Fetch DB References submenu	blob \| commitdiff \| diff to current
2021-02-22	Mateusz Warowny	JAL-3809 - Fixed param edit dialog for jalviewjs.	blob \| commitdiff \| diff to current
2021-02-05	Jim Procter	JAL-3811 document SHOW_JWS2_SERVICES user preference...	blob \| commitdiff \| diff to current
2020-12-14	Jim Procter	Merge branch 'Jalview-JS/develop' into merge_js_develop	blob \| commitdiff \| diff to current
2020-12-11	Mateusz	JAL-3690 Let's enable web services (seriously this...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3775 Eclipse re-formatting commit	blob \| commitdiff \| diff to current
2020-11-13	Mateusz Waronwy	JAL-3690 separate startup and poll code in SeqAnnotatio...	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3628 Error when saving alert box has been moved...	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...	blob \| commitdiff \| diff to current
2020-11-10	Ben Soares	JAL-3628 Fixed oddly worded and non-formatted error...	blob \| commitdiff \| diff to current
2020-11-10	Ben Soares	JAL-3628 Even more Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-11-10	Ben Soares	JAL-3628 More Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-09-23	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-09-21	Jim Procter	Merge branch 'merge_review/JAL-3490_2_11_2_develop...	blob \| commitdiff \| diff to current
2020-08-31	Jim Procter	JAL-3732 - sequences can be moved up/down in cursor...	blob \| commitdiff \| diff to current
2020-08-31	Jim Procter	JAL-3732 - sequences can be moved up/down in cursor...	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	JAL-3490 merged with 2.11.2 develop	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	Merge branch 'patch/Release_2_11_1_Branch_patch_JAL...	blob \| commitdiff \| diff to current
2020-08-12	Ben Soares	JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...	blob \| commitdiff \| diff to current
2020-07-20	Mateusz Warowny	JAL-3690 alternative servers menu fix	blob \| commitdiff \| diff to current
2020-07-17	Mateusz Warowny	JAL-3690 restore jws1 JPred	blob \| commitdiff \| diff to current
2020-07-15	Mateusz Warowny	JAL-3690 refactoring web-services discovery	blob \| commitdiff \| diff to current
2020-07-09	Mateusz Warowny	Merge branch 'feature/JAL-3686_slivka_client_js_update... alpha/merge_212_JalviewJS_2112	blob \| commitdiff \| diff to current
2020-07-08	Ben Soares	Merge branch 'releases/Release_2_11_1_Branch' into...	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3628 Fixed oddly worded and non-formatted error...	blob \| commitdiff \| diff to current
2020-07-06	Ben Soares	JAL-3628 Even more Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-07-04	Jim Procter	JAL-3638 don’t move cursor to next gap after moving...	blob \| commitdiff \| diff to current
2020-07-04	Jim Procter	JAL-3680 check whether a sequence selection exists...	blob \| commitdiff \| diff to current
2020-07-04	Jim Procter	JAL-3638 shift+arrow keys in cursor mode jumps cursor...	blob \| commitdiff \| diff to current
2020-07-04	Ben Soares	JAL-3628 More Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	JAL-3493 clear search highlights when escape/deselect all	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	JAL-3493 clear search highlights when escape/deselect all	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...	blob \| commitdiff \| diff to current
2020-06-12	BobHanson	JAL-3446 from applet -- reload; also fixes some repaint...	blob \| commitdiff \| diff to current
2020-06-10	BobHanson	JAL-3645 errant "g" in JavaDoc	blob \| commitdiff \| diff to current
2020-06-10	BobHanson	JAL-3446 Dynamic menu - Moves calc sortby tree item...	blob \| commitdiff \| diff to current
2020-06-09	BobHanson	JAL-3446 from applet; JAL-3374	blob \| commitdiff \| diff to current
2020-06-07	BobHanson	JAL-3446 reorganized JalviewJSApp (accidentally put...	blob \| commitdiff \| diff to current
2020-06-07	BobHanson	reorganized JalviewJSApp (accidentally put that in...	blob \| commitdiff \| diff to current
2020-06-06	BobHanson	JAL-3446 no actual changes; just using meaningful frame...	blob \| commitdiff \| diff to current
2020-06-06	BobHanson	JAL-3446 adds Jmol viewer embedding.	blob \| commitdiff \| diff to current
2020-06-05	BobHanson	JAL-3446 removes all JalviewJSApp dependency from jalvi...	blob \| commitdiff \| diff to current
2020-06-05	BobHanson	Refactoring of Jalview, JalviewAppLoader, JalviewApp...	blob \| commitdiff \| diff to current
2020-06-03	BobHanson	JAL-3446 from JAL-3253 Discoverers	blob \| commitdiff \| diff to current
2020-06-03	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3446 from JAL-3253-applet Desktop and Jws2Discovere...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3626 from JAL-3253-applet Jalview.java	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3626 from JAL-3253-applet web page embedding	blob \| commitdiff \| diff to current
2020-06-01	BobHanson	JAL-3626 from JAL-3253-applet JalviewLite scrollTo...	blob \| commitdiff \| diff to current
2020-06-01	BobHanson	JAL-3262 from JAL-3253-applet JalviewApp integration	blob \| commitdiff \| diff to current
2020-06-01	BobHanson	JAL-3262 from JAL-3253-applet JalviewApp integration	blob \| commitdiff \| diff to current
2020-05-19	gmungoc	Merge branch 'develop' into feature/JAL-3551Pymol	blob \| commitdiff \| diff to current
2020-05-18	Jim Procter	Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...	blob \| commitdiff \| diff to current
2020-04-23	Jim Procter	Merge branch 'develop' into alpha/JAL-3362_Jalview_212_...	blob \| commitdiff \| diff to current
2020-04-21	gmungoc	JAL-3603 load annotation file from RELATIVE_URL in...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-03-09	gmungoc	Merge branch 'develop' into feature/JAL-2422ChimeraX	blob \| commitdiff \| diff to current
2020-02-21	Jim Procter	JAL-3186 avoid repainting twice in splitframe	blob \| commitdiff \| diff to current
2020-02-21	Jim Procter	Merge branch 'develop' into features/JAL-3187_uitweaks	blob \| commitdiff \| diff to current
2020-02-20	gmungoc	JAL-3187 repaint complement after loading on features	blob \| commitdiff \| diff to current
2020-02-19	Jim Procter	JAL-3187 JAL-2764 close feature settings when parent...	blob \| commitdiff \| diff to current
2020-02-18	Jim Procter	JAl-3187 JAL-3535 JAL-3534 update open feature settings...	blob \| commitdiff \| diff to current
2020-02-17	Jim Procter	JAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...	blob \| commitdiff \| diff to current
2020-02-17	Jim Procter	JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...	blob \| commitdiff \| diff to current
2020-02-12	Jim Procter	JAL-3187 view controller UI api method to show feature...	blob \| commitdiff \| diff to current
2020-02-04	gmungoc	JAL-2422 pull up refactoring in preparation for Chimera...	blob \| commitdiff \| diff to current
2020-02-04	MMWarowny	JAL-3515 Extract core WSDiscoverer methods to a separat...	blob \| commitdiff \| diff to current
2019-12-11	gmungoc	JAL-3490 revised layout and search algorithm (more...	blob \| commitdiff \| diff to current
2019-10-03	Jim Procter	JAL-3070 slivka service discovery as a background threa...	blob \| commitdiff \| diff to current
2019-09-23	Jim Procter	JAL-3066 JAL-3070 pull up non-jabaws specific service...	blob \| commitdiff \| diff to current
2019-09-05	Mateusz Warowny	JAL-3066 Implement clustaloWS using slivka system.	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-07-15	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	blob \| commitdiff \| diff to current
2019-07-12	Thomas	JAL-2629 add sort by evalue and bit score	blob \| commitdiff \| diff to current
2019-07-11	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	blob \| commitdiff \| diff to current
2019-07-10	Jim Procter	Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha...	blob \| commitdiff \| diff to current
2019-07-10	tva	JAL-2629 fix incorrect hmmbuild on groups behaviour	blob \| commitdiff \| diff to current
2019-07-10	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	blob \| commitdiff \| diff to current
2019-07-03	tva	JAL-2629 can now filter by sequence e-value or bit...	blob \| commitdiff \| diff to current
2019-07-02	tva	JAL-2629 add simple jackhmmer functionality	blob \| commitdiff \| diff to current
2019-06-24	Jim Procter	JAL-3330 merge styles onto originating view after fetch...	blob \| commitdiff \| diff to current
2019-06-04	Jim Procter	Merge branch 'develop' into developtomchmmer	blob \| commitdiff \| diff to current
2019-05-28	Ben Soares	JAL-1988 Some TEST code accidentally left in now remove...	blob \| commitdiff \| diff to current
2019-04-18	hansonr	Corrects incorrect calls to ViewportRanges.setEndSeq()	blob \| commitdiff \| diff to current
2019-04-16	hansonr	caching of DnD files dropped	blob \| commitdiff \| diff to current
2019-04-11	Jim Procter	Merge branch 'develop' into task/JAL-3130_Java_11_inves...	blob \| commitdiff \| diff to current
2019-04-03	hansonr	replacing @j2sNative with @j2sIgnore where appropriate...	blob \| commitdiff \| diff to current
2019-03-31	hansonr	clean up implicit object refs	blob \| commitdiff \| diff to current
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