| 2019-07-03 |
tva | JAL-2629 can now filter by sequence e-value or bit... |
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| 2019-07-02 |
tva | JAL-2629 add simple jackhmmer functionality |
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| 2019-06-04 |
Jim Procter | Merge branch 'develop' into developtomchmmer |
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| 2019-04-15 |
Ben Soares | JAL-3130 Helper classes to take Class Exceptions when... |
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| 2019-03-20 |
Ben Soares | JAL-3130 Lots of deprecation fixes. See utils/deprecat... |
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| 2019-03-07 |
gmungoc | Merge branch 'feature/JAL-3180colourAnnotationMenu... |
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| 2019-03-05 |
gmungoc | Merge remote-tracking branch 'origin/features/JAL-2620a... |
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| 2019-01-04 |
gmungoc | JAL-3180 fix By Annotation selection state in colour... |
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| 2018-10-04 |
gmungoc | JAL-3132 set status message when over sequence id or... |
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| 2018-05-30 |
gmungoc | JAL-2629 suppress 'Add Database' menu option in favour... |
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| 2018-05-22 |
gmungoc | JAL-2629 method refactor and menu tidying |
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| 2018-03-30 |
gmungoc | JAL-2629 combine with/without defaults in one method... |
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| 2018-03-26 |
gmungoc | JAL-2939 unused action handler methods removed |
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| 2018-03-16 |
gmungoc | JAL-2620 alternative genetic code translation tables |
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| 2018-02-20 |
gmungoc | Merge branch 'develop' into features/mchmmer |
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| 2018-02-19 |
gmungoc | JAL-2629 refactoring of Hmmer preferences |
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| 2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
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| 2017-09-21 |
gmungoc | JAL-2738 PoC of Load VCF file on to gene sequence |
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| 2017-08-25 |
TZVanaalten | JAL-2629 add ability to add and select a DB for hmmsearch |
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| 2017-08-25 |
TZVanaalten | JAL-2629 add basic parameter adjustment to hmmsearch... |
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| 2017-08-18 |
TZVanaalten | Merge branch 'develop' into features/hmmer |
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| 2017-08-17 |
TZVanaalten | JAL-2629 add documentation to previous work |
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| 2017-08-16 |
Jim Procter | JAL-2418 source formatting |
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| 2017-08-15 |
TZVanaalten | JAL-2629 add HMMER version check |
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| 2017-08-15 |
TZVanaalten | JAL-2629 selected HMM name now shown in HMMER menu |
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| 2017-08-15 |
TZVanaalten | JAL-2629 the HMMER tab is now disabled when HMMER is... |
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| 2017-08-14 |
TZVanaalten | JAL-2629 remove redundant options from HMMER menu |
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| 2017-08-08 |
TZVanaalten | JAL-2629 add ability to select hmmer binaries folder |
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| 2017-08-04 |
TZVanaalten | JAL-2629 multiple HMMs can now be dropped onto an alignment |
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| 2017-07-31 |
TZVanaalten | JAL-2629 add hmmalign command |
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| 2017-07-27 |
TZVanaalten | JAL-2629 implement hmmbuild |
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| 2017-07-25 |
TZVanaalten | JAL-2629 add non-functional HMMER menu |
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| 2017-07-14 |
TZVanaalten | add partial button fix to annotation and statistics... features/hmmer_statistics |
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| 2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
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| 2017-05-05 |
gmungoc | Merge branch 'develop' into features/JAL-2435splitScree... |
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| 2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside... |
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| 2017-04-07 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
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| 2017-03-31 |
gmungoc | JAL-1608 unused method removed |
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| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups |
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| 2017-03-30 |
gmungoc | JAL-1608 leave Create Group, Remove Group menu items... |
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| 2017-02-27 |
gmungoc | JAL-1632 dialog to calculate either Tree or PCA |
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| 2017-02-13 |
gmungoc | JAL-1632 first cut of Tree chooser dialog and ScoreMode... |
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| 2017-02-09 |
gmungoc | JAL-1608 menu entry text; enable/disable Create/Remove... |
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| 2017-02-08 |
gmungoc | JAL-2399 JAL-2400 tidy Text Colour wording, behaviour... |
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| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refact... |
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| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-19 |
gmungoc | JAL-2383 restore PID colour threshold from project... |
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| 2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-11 |
gmungoc | JAL-2344 FileFormats singleton for formats, FileFormatI... |
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| 2016-12-21 |
gmungoc | JAL-2360 ColourMenuHelper now builds and selects items... |
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| 2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignF... |
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| 2016-12-19 |
gmungoc | JAL-2361 select colour menu item by matching its name... |
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| 2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum, |
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| 2016-12-13 |
gmungoc | JAL-2361 adding items to applet colour menus, TCoffee... |
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| 2016-12-12 |
gmungoc | JAL-2361 extract methods to (re-)build colour menu |
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| 2016-12-09 |
gmungoc | JAL-1895 suppress RNA interaction colour option |
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| 2016-11-28 |
gmungoc | Merge branch 'develop' into trialMerge |
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| 2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
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| 2016-11-24 |
gmungoc | Distinguish text-only output formats and others (.jar... |
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| 2016-11-24 |
tcofoegbu | JAL-2326 updated references of JOptionPane to JvOptionPane |
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| 2016-11-24 |
gmungoc | FileFormatI further tweaks, clean compile |
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| 2016-11-22 |
Jim Procter | JAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie... |
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| 2016-11-02 |
Jim Procter | JAL-345 JAL-1738 menu item, AlignFrame action listener... |
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| 2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
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| 2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
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| 2016-10-05 |
Jim Procter | JAL-2189 source formatting |
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| 2016-08-31 |
gmungoc | JAL-2077 test isPopupTrigger in mouseReleased or mouseC... |
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| 2016-08-24 |
gmungoc | JAL-1355 correct 'thereshold' to 'threshold' in message... |
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| 2016-08-23 |
gmungoc | JAL-2176 unused field / methods removed |
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| 2016-04-24 |
Jim Procter | JAL-2077 - reinstate popups on osx |
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| 2016-04-22 |
gmungoc | JAL-1812 JAL-2068 add Run Groovy Script to AlignFrame... |
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| 2015-12-22 |
gmungoc | JAL-391 new Calculate options to Reverse, Reverse Compl... |
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| 2015-10-16 |
Jim Procter | JAL-1925 update source version in license Release_2_9_0b2 |
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| 2015-10-08 |
Jim Procter | JAL-1894 update year/version in copyright |
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| 2015-10-01 |
tcofoegbu | JAL-1912 refactor annotation refsequence assignemnt... |
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| 2015-09-30 |
tcofoegbu | JAL-1912 added support of tcoffee annotation and other... |
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| 2015-09-22 |
Jim Procter | Merge branch 'develop' into Release_2_9_0b1_Branch |
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| 2015-09-14 |
gmungoc | JAL-1865 fixed so initial state of annotation sort... |
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| 2015-09-10 |
Jim Procter | JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... |
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| 2015-09-10 |
Jim Procter | JAL-1645 source formatting and organise imports |
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| 2015-09-06 |
Jim Procter | JAL-1645 JAL-1355 UI/i18n: added missing messages,... |
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| 2015-07-08 |
gmungoc | JAL-1759 merge from develop |
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| 2015-07-07 |
tcofoegbu | JAL-1805 test envirionment separation |
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| 2015-03-26 |
gmungoc | Merge develop to Release_2_8_3_Branch |
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| 2015-03-06 |
Jim Procter | JAL-1683 replace year/version strings with tokens in... |
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| 2015-03-06 |
Jim Procter | Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... |
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| 2015-01-20 |
Charles Ofoegbu | JAL-1553 enhancement of column selection by annotation... |
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| 2015-01-10 |
Charles Ofoegbu | JAL-1553 implementation of column selection by annotati... |
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| 2014-12-22 |
Jim Procter | Merge: 497958b 68dcaa7 |
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| 2014-12-15 |
Jim Procter | JAL-1620 version bump and release notes |
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| 2014-11-24 |
Jim Procter | Merge branch 'JAL-1569_wuss_vienna_broke' into develop |
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| 2014-11-24 |
Jim Procter | JAL-1595 update annotation sort on opening of the ... |
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| 2014-11-13 |
Jim Procter | Merge branch 'features/JAL-1469_svg-output-for-figure... |
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| 2014-11-13 |
Jim Procter | Merge branch 'features/JAL-1469_svg-output-for-figure... |
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| 2014-11-12 |
Charles Ofoegbu | Added support for SVG Export |
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| 2014-11-12 |
Jim Procter | Merge branch 'features/typed_annotations_calcId' into... |
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| 2014-11-06 |
gmungoc | JAL-1152 use a proper RadioButton not a faked one |
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| 2014-11-05 |
gmungoc | JAL-1152 new Structure tab on Preferences for SS deriva... |
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| 2014-11-03 |
gmungoc | JAL-1152 annotation sorting preferences and help docume... |
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| 2014-10-31 |
gmungoc | JAL-1152 menu tweaks plus new option to put Autocalc... |
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