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acceptDrop call added before getTransferable in alignment frame drag and
[jalview.git] / src /
2016-10-17 kiramtacceptDrop call added before getTransferable in alignme... bug/JAL-1552dragndroptake2 tree | commitdiff
2016-10-17 kiramtRe-attempt to fix JAL-1552 by removing extra calls... tree | commitdiff
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties tree | commitdiff
2016-10-13 gmungocJAL-2253 2 second timeout on ping URL, default 5 minute... feature/JAL-2553ensemblGenomes tree | commitdiff
2016-10-13 gmungocMerge branch 'releases/Release_2_10_Branch' into develop tree | commitdiff
2016-10-13 gmungocJAL-1479 revise warning message to suit all contexts bug/JAL-2044jmolModelBinding tree | commitdiff
2016-10-13 gmungocJAL-2044 increase Jmol file load timeout from 5 to... tree | commitdiff
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has... tree | commitdiff
2016-10-13 gmungocJAL-2044 include model name in progress bar message... tree | commitdiff
2016-10-11 tcofoegbuMerge branch 'features/JAL-2039_Offer_cached_structuref... tree | commitdiff
2016-10-11 tcofoegbuJAL-2039 improvement to offer cached structure view... features/JAL-2039_Offer_cached_structurefiles_immediately tree | commitdiff
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop tree | commitdiff
2016-10-11 gmungocJAL-2241 check for null jprovider when processing New... tree | commitdiff
2016-10-11 kiramtJAL-1552 added acceptDrop call before getTransferable... bug/JAL-1552dragndropurl tree | commitdiff
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop tree | commitdiff
2016-10-11 gmungocJAL-1479 small tidy of error message when Sifts mapping... tree | commitdiff
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels tree | commitdiff
2016-10-10 tcofoegbuJAL-2262 JAL-2195 bug fix for mapping local structure... tree | commitdiff
2016-10-06 gmungocJAL-2254 map error text in root node of EMBL XML response tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties tree | commitdiff
2016-10-06 gmungocJAL-2245 checks for null added (in case EMBL fetch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2036 rebuild menus for each panel before adding... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 license header tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties tree | commitdiff
2016-10-05 Jim ProcterRevert "JAL-2245 Castor mapping and code changes for... tree | commitdiff
2016-10-05 gmungocJAL-1191 revert to using SequenceOntologyLite due to... tree | commitdiff
2016-10-05 gmungocJAL-1191 configure full SO for desktop, SOLite for... tree | commitdiff
2016-10-05 gmungocJAL-2245 defence against NullPointer if no EMBL data... tree | commitdiff
2016-10-05 gmungocJAL-1191 use full SO in desktop application tree | commitdiff
2016-10-05 gmungocJAL-2105 update Ensembl REST version to 4.7 tree | commitdiff
2016-10-05 gmungocJAL-1191 refined warning message tree | commitdiff
2016-10-05 gmungocJAL-1191 added mRNA isA transcript to SequenceOntologyL... tree | commitdiff
2016-10-04 gmungocMerge branch 'bug/JAL-2245enaXmlChange' into develop tree | commitdiff
2016-10-04 gmungocJAL-2245 Castor mapping and code changes for change... bug/JAL-2245enaXmlChange tree | commitdiff
2016-10-04 gmungocJAL-2232 JAL-2154 update dbrefs to newly created datase... tree | commitdiff
2016-10-03 gmungocJAL-2110 javadoc formatting only tree | commitdiff
2016-10-03 gmungocJAL-2110 JAL-1705 handle not found (400) better tree | commitdiff
2016-10-03 gmungocJAL-2110 additional tests for setDatasetSequence, javad... tree | commitdiff
2016-10-03 Jim ProcterJAL-2210 use addDBRef to ensure normalisation (just... tree | commitdiff
2016-10-03 Jim ProcterJAL-2210 need to add both transcript and product, and... tree | commitdiff
2016-10-03 Jim ProcterJAL-2210 JAL-2232 remove version number from ENACDS... tree | commitdiff
2016-10-03 Jim ProcterJAL-2210 hack to remove EMBL from Protein crossrefs... tree | commitdiff
2016-10-03 Jim ProcterJAL-2210 explicit ‘doNotAdd’ list to prevent sequences... tree | commitdiff
2016-10-02 Jim ProcterJAL-2210 remove ENSEMBL from protein DB list: tree | commitdiff
2016-10-02 Jim ProcterJAL-2210 two pass attempt to import retrieved sequences... tree | commitdiff
2016-10-02 Jim ProcterJAL-2210 try to merge all sequences referenced by a... tree | commitdiff
2016-10-02 Jim ProcterJAL-2210 comments tree | commitdiff
2016-10-02 Jim ProcterJAL-2210 discover candidate dataset sequences for an... tree | commitdiff
2016-10-02 Jim ProcterJAL-2079 pass server name when reporting FTS ‘warning... tree | commitdiff
2016-10-01 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_unipro... tree | commitdiff
2016-10-01 Jim ProcterJAL-2210 factored out code for processing cross-referen... tree | commitdiff
2016-10-01 Jim ProcterJAL-2210 refactor code to remove from a list of dbrefs... tree | commitdiff
2016-09-30 Jim ProcterJAL-2210 some DBRef xref/ref correspondences may add... tree | commitdiff
2016-09-30 Jim ProcterJAL-2210 CrossRef.findInDataset should search for prese... tree | commitdiff
2016-09-30 Jim ProcterJAL-2210 add uniprot+mapping between ENST and ENSP... tree | commitdiff
2016-09-30 gmungocJAL-2236 code restored (and some compiler warnings... tree | commitdiff
2016-09-30 gmungocMerge branch 'develop' into features/JAL-1856dbRefFetch... tree | commitdiff
2016-09-30 gmungocJAL-2236 fixes for desktop and applet implementation... tree | commitdiff
2016-09-29 gmungocJAL-1856 better warning messages for sequence matching... features/JAL-1856dbRefFetcherMessages tree | commitdiff
2016-09-29 gmungocJAL-2213 code warnings addressed (typed collections... tree | commitdiff
2016-09-29 gmungocJAL-2213 removed PDB from db sources list; also code... tree | commitdiff
2016-09-29 gmungocJAL-2213 made RESNUM constant private (not used elsewhe... tree | commitdiff
2016-09-29 gmungocJAL-2213 corrected wait for files to load in Jmol;... tree | commitdiff
2016-09-29 gmungocJAL-2237 apply default filter as sort in initial search tree | commitdiff
2016-09-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-09-29 Jim ProcterJAL-2236 include associated sequence id for annotation... tree | commitdiff
2016-09-29 Jim ProcterMerge branch 'patch/JAL-2238_tcoffee_subgroups' into... tree | commitdiff
2016-09-29 Jim ProcterJAL-2236 fix: bail if no context available for subgroup tree | commitdiff
2016-09-29 gmungocJAL-1903 increase REST reply timeout from 5 to 15 seconds tree | commitdiff
2016-09-28 Jim ProcterJAL-2235 raise exceptions if self reference or referenc... tree | commitdiff
2016-09-28 Jim ProcterJAL-2210 patch for when no DBRefs on sequence tree | commitdiff
2016-09-28 Jim ProcterJAL-2210 instrument setDBRefs to call ensurePrimaries tree | commitdiff
2016-09-28 Jim ProcterJAL-2210 JAL-2232 check response code before attempting... tree | commitdiff
2016-09-28 Jim ProcterJAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot... tree | commitdiff
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol tree | commitdiff
2016-09-27 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_unipro... tree | commitdiff
2016-09-27 Jim ProcterJAL-2210 formatting tree | commitdiff
2016-09-27 Jim ProcterJAL-2210 report stack trace for unexpected exceptions tree | commitdiff
2016-09-27 Jim ProcterJAL-2210 promote direct dbrefs from verified sources... tree | commitdiff
2016-09-27 Jim ProcterJAL-2210 resolve todo - addDBRef adds to dataset sequen... tree | commitdiff
2016-09-27 gmungocJAL-2231 save preferred scroll height _without_ progres... tree | commitdiff
2016-09-27 gmungocJAL-2230 use correct mapping to transfer features to... tree | commitdiff
2016-09-24 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop tree | commitdiff
2016-09-23 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-09-23 tcofoegbuJAL-2164 JAL-1919 fixed failed revert commit tree | commitdiff
2016-09-23 Jim ProcterJAL-2214 fix docs (consistent and correct base pair... tree | commitdiff
2016-09-23 gmungocJAL-2214 Javadoc tree | commitdiff
2016-09-22 gmungocJAL-1421 use declared type of ResidueProperties.propHash tree | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... tree | commitdiff
2016-09-22 gmungocJAL-2216 null currentAlignFrame on close all windows... tree | commitdiff
2016-09-22 gmungocJAL-2216 finalize call super.finalize() tree | commitdiff
2016-09-22 gmungocJAL-2216 finalise corrected to finalize tree | commitdiff
2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and Annotation... tree | commitdiff
2016-09-22 gmungocJAL-2216 finalize() refactored so not called programmat... tree | commitdiff
2016-09-22 gmungocJAL-2216 new dispose() method to null references tree | commitdiff
2016-09-22 gmungocJAL-2216 finalize call super.finalize() tree | commitdiff
2016-09-21 Jim ProcterJAL-2214 JAL-1841 compute canonical, canonicalAndWobble... tree | commitdiff
2016-09-21 Jim ProcterJAL-1841 JAL-2215 add the ‘ignore gaps’ structure conse... tree | commitdiff
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