Modified AnnotationColumnChooser to maintain state of previous selection when current...
[jalview.git] / src /
2015-01-14 Charles OfoegbuModified AnnotationColumnChooser to maintain state... features/JAL-1553_select-columns-by-annotation
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh...
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati...
2014-12-22 Charles OfoegbuPatch to synchronize title svg and allignment svg scrolling
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when...
2014-12-14 Mungo CarstairsJAL-1596 set HTTP 1.1 in HttpClient
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched
2014-12-08 Charles Ofoegbumerge commit
2014-12-08 Charles OfoegbuJAL-1613 hotfix for duplicated sequence after pairwise...
2014-12-08 Charles OfoegbuAdded annotation export configuration for Html export...
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into...
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export...
2014-12-05 Charles Ofoegbumodified html css
2014-12-05 Charles OfoegbuJAL-1605 merge commit
2014-12-05 Charles OfoegbuChange the Html export to utilize svg
2014-12-05 gmungocJAL-1614 flag 'protein' removed
2014-12-05 gmungocJAL-1614 flag 'protein' removed
2014-12-03 Jim ProcterJAL-1517 disable desktop 'take snapshot' menu item...
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard...
2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element.
2014-12-01 Jim ProcterJAL-1601 ignore the JABA Jpred client in Jalview 2...
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into...
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into...
2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into develop
2014-11-28 gmungocJAL-1610 check reference annotations against alignment...
2014-11-28 Jim ProcterJAL-1522 output installation type to stdout
2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from...
2014-11-28 Jim ProcterJAL-1517 formatting
2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity
2014-11-28 Jim ProcterJAL-1583 javadoc and fix constructor signature
2014-11-28 Jim ProcterJAL-1604 formatting
2014-11-28 Jim ProcterJAL-1604 revised wording and internationalised dialog
2014-11-28 Jim ProcterJAL-1583 back out original fix and simply check MSAWSTh...
2014-11-28 Jim ProcterJAL-1583 formatting
2014-11-28 Jim ProcterJAL-1583 new validInput flag set according to validity...
2014-11-28 Jim ProcterJAL-1583 refactored addInternalFrame to allow webservic...
2014-11-28 Jim ProcterJAL-1517 formatting/tidy
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B...
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into develop
2014-11-27 Jim ProcterJAL-674 add sequence associated annotation rows to...
2014-11-27 Jim ProcterJAL-1177 JAL-905 cannot recover sequences from dataset...
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into develop
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B...
2014-11-27 Jim ProcterJAL-674 patch to fix bug with showing reference annotat...
2014-11-27 Jim ProcterJAL-674 formatting
2014-11-27 Jim ProcterJAL-674 unused variable
2014-11-27 gmungocJAL-1603 if Chimera selected in Preferences, warn if...
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source...
2014-11-27 Jim ProcterJAL-674 JAL-966 new method to retrieve all views
2014-11-27 Jim Procterorganise imports
2014-11-27 Jim ProcterJAL-966 promote getName to an api method
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1604_Entire-alignment-submission...
2014-11-27 Charles OfoegbuJAL-1604 Entire sequence submision for MSA job bugfix
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1583_MSA_webservice_validation...
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1583_MSA_webservice_validation...
2014-11-27 Charles Ofoegbumodified regex for sequence validation
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source...
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-207_pairwise-alignment-context...
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-207_pairwise-alignment-context...
2014-11-26 Charles OfoegbuJAL-207 pairwise alignment sequence contexts propergati...
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into...
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into...
2014-11-26 Charles OfoegbuJAL-998 fixed empty tooltip bug when only one sequence...
2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into develop
2014-11-26 Jim ProcterJAL-674 make RNAML-extracted secondary structure lines...
2014-11-26 Jim ProcterJAL-1578 fix logic for showing score when no descriptio...
2014-11-26 Jim ProcterJAL-674 JAL-1578 commented code for displaying annotati...
2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondar...
2014-11-26 Jim ProcterJAL-674 employ the provided DNA/Protein matrix string...
2014-11-26 Jim ProcterJAL-674 disable addition of PDBRESNUM annotation line
2014-11-26 Jim ProcterJAL-674 nicer temperature factor labelling and include...
2014-11-26 gmungocJAL-1528 NullPointer check / more informative PDB fetch...
2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into develop
2014-11-25 Jim Procterfix for JAL-689 ensure fastpainting flag set only when...
2014-11-25 Jim Procterformatting
2014-11-25 Jim Procterpatch for JAL-1599 - annotation row constructed by...
2014-11-25 Charles Ofoegbumerge commit
2014-11-25 Charles Ofoegbumerge commit features/JAL-1469_svg-output-for-figure-export
2014-11-25 Charles OfoegbuJAL-1469 Added SVGOptions.java for lineart/text renderi...
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_...
2014-11-24 Jim ProcterJAL-1593 refactor rna helix colours to static singleton...
2014-11-24 Jim ProcterJAL-1264 update annotation panel dimensions before...
2014-11-24 Jim ProcterJAL-1595 update annotation sort on opening of the ...
2014-11-24 Jim ProcterJAL-1595 annotation score is total number of rna helices
2014-11-23 Jim ProcterJAL-1569 interactive editing of secondary structure...
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_...
2014-11-23 Jim Procteremploy test and secondary structure character for deter...
2014-11-23 Jim ProcterJAL-1569 formatting
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (store...
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character
2014-11-23 Jim ProcterJAL-1569 formatting
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment...
2014-11-23 Jim ProcterJAL-1569 formatting
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files...
2014-11-23 Jim ProcterJAL-1569 remove stdout on parsing RNA
2014-11-23 Jim ProcterJAL-1152 avoid NPE on null alignment annotation vector
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