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Merge branch 'j2s/develop-toc' into j2s/develop
[jalview.git] / src /
2015-07-12 gmungocJAL-1807 expanded import java.awt.* to allow code analysis j2s/develop-jim j2s/develop-mungo tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (uk.ac) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (org.jibble) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (MCview) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.ws.*) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.workers) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.viewmodel) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.util) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.structure) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.schemes) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.renderer) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.jbgui) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.javascript) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.io.*) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.gui) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.ext.*) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.datamodel) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.controller) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.commands) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.bin) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.appletgui) tree | commitdiff
2015-07-10 gmungocJAL-1807 explicit imports (jalview.analysis) tree | commitdiff
2015-07-08 gmungocJAL-1807 merge from JAL-1759jmolUpdate tree | commitdiff
2015-07-08 gmungocJAL-1807 disambiguated method signatures with numeric... tree | commitdiff
2015-07-08 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-07-08 gmungocJAL-1598 replaced faulty regex, amended Varna call... tree | commitdiff
2015-07-07 tcofoegbuJAL-1769 fixed output to jalview (.jpv) file in headles... tree | commitdiff
2015-07-07 tcofoegbuJAL-1805 test envirionment separation tree | commitdiff
2015-07-06 tcofoegbuMerge branch 'features/1769_headless-mode-test' into... tree | commitdiff
2015-07-06 tcofoegbuJAL-1769 fixed headless execution mode and created... tree | commitdiff
2015-07-06 gmungocJAL-1421 generics used for leaner safer code tree | commitdiff
2015-07-06 gmungocJAL-1799 tweaked calculation for applet, now showing... tree | commitdiff
2015-07-06 gmungocJAL-1799 equivalent logic in applet tree | commitdiff
2015-07-03 gmungocMerge branch 'develop' into features/JAL-892varnaToProject tree | commitdiff
2015-07-03 gmungocJAL-892 1 second delay for correct initial rendering... tree | commitdiff
2015-07-02 tcofoegbuMerge branch 'bug/JAL-1443_loading-empty-file' into... tree | commitdiff
2015-07-02 tcofoegbuJAL-1443 data validation for empty content before loadi... tree | commitdiff
2015-07-02 gmungocJAL-1677 check all response lines when parsing REST... tree | commitdiff
2015-07-01 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-07-01 gmungocJAL-1681 more condensed tooltip where codons share... tree | commitdiff
2015-07-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-07-01 tcofoegbuhouse keeping tree | commitdiff
2015-07-01 gmungocJAL-1802 explanatory comment added tree | commitdiff
2015-07-01 gmungocJAL-1802 handle slide sequences edits in split frame... tree | commitdiff
2015-07-01 gmungocJAL-1799 deduct more space for decorators on Windows tree | commitdiff
2015-07-01 gmungocJAL-1619 align the added sequences to match what they... tree | commitdiff
2015-06-30 tcofoegbuMerge branch 'features/JAL-1641_JSON-tests-and-docs... tree | commitdiff
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring tree | commitdiff
2015-06-30 gmungocJAL-1691 trackpad scrolling goes to full width even... tree | commitdiff
2015-06-29 gmungocJAL-1799 adjusted annotation height calculation tree | commitdiff
2015-06-26 tcofoegbuJAL-1641 fixed broken functionalities after refactor tree | commitdiff
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject tree | commitdiff
2015-06-26 tcofoegbumerge tree | commitdiff
2015-06-26 tcofoegbuJAL-1780 improvement to ensure export settings dialog... tree | commitdiff
2015-06-25 Jim ProcterJAL-1691 avoid NPE when original split frame has been... tree | commitdiff
2015-06-25 Jim ProcterJAL-1780 JAL-653 JAL-1892 brackets in wrong place broke... tree | commitdiff
2015-06-24 Jim ProcterMerge branch 'features/JAL-1370_patchshowunconserved... tree | commitdiff
2015-06-24 Jim ProcterJAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation tree | commitdiff
2015-06-23 Jim ProcterJAL-1780 JAL-653 jim forgot to put the conditional... merge/develop_JAL-1780_JAL-653_JAL-1892 tree | commitdiff
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 dropped unnecessary refs tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports tree | commitdiff
2015-06-22 gmungocJAL-892 tidy Varna panel names; JAL-1789 simplified... tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil... tree | commitdiff
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports tree | commitdiff
2015-06-19 gmungocJAL-892 check viewer is linked to alignment panel on... tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 minimise call rate now av.hasHiddenRow... tree | commitdiff
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and... tree | commitdiff
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring tree | commitdiff
2015-06-18 Jim ProcterJAL-653 JAL-1780 JAL-1543 javadoc and comment about... tree | commitdiff
2015-06-18 Jim ProcterJAL-653 JAL-1780 javadoc for FeatureRenderer prior... tree | commitdiff
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... tree | commitdiff
2015-06-18 gmungocJAL-1544 typos in comments tree | commitdiff
2015-06-18 gmungocJAL-892 JAL-1779 save/restore Varna viewer to/from... tree | commitdiff
2015-06-18 gmungocJAL-1695 default ENABLE_SPLIT_FRAME to true for desktop tree | commitdiff
2015-06-18 gmungocJAL-892 schema changes (rnaViewer) for save Varna to... tree | commitdiff
2015-06-18 gmungocJAL-1781 annotation.sequenceRef now sequence id not... features/JAL-1781annotationXmlIds tree | commitdiff
2015-06-17 Jim ProcterJAL-1784 minimise data duplication, and report out... tree | commitdiff
2015-06-17 Jim ProcterJAL-1784 refactor parse method to directly parse FilePa... tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into... tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-1780_export... tree | commitdiff
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile tree | commitdiff
2015-06-17 tcofoegbuJAL-1780 Export settings for flatfile output tree | commitdiff
2015-06-17 gmungocJAL-1588 restore ChimeraViewFrame geometry as well tree | commitdiff
2015-06-17 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-17 gmungocJAL-1778 reinstated this.ssm to handle 'close all windo... tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 patch for regression from Anne Menard’s pseudo... tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 patch regression bug when displayChar is null... tree | commitdiff
2015-06-15 Jim Procterfix for JAL-1775 (and reorganise imports) tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 FileLoader javadoc tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 fix regression from commit 70f9c4700f20a8fa57e... tree | commitdiff
2015-06-15 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-06-15 gmungocJAL-1778 deregister as a listener when panel closed tree | commitdiff
2015-06-15 tcofoegbuJAL-1641 clean up tree | commitdiff
2015-06-15 tcofoegbuJAL-1641 docs for ComplexAlignFile interface tree | commitdiff
2015-06-15 tcofoegbuclean up tree | commitdiff
2015-06-12 tcofoegbuJAL-1627 removed extra spaces at end of tooltip tree | commitdiff
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