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Merge branch 'develop' into groovy/JAL-2074_upgradeto2.4.4
[jalview.git] / test /
2016-04-26 tcofoegbuJAL-2071 improvement to get column data files as InputS... tree | commitdiff
2016-04-26 tcofoegbuJAL-2071 House keeping tree | commitdiff
2016-04-25 tcofoegbudevelop merge tree | commitdiff
2016-04-25 tcofoegbudevelop merge tree | commitdiff
2016-04-25 tcofoegbuJAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search tree | commitdiff
2016-04-24 Jim ProcterMerge branch 'JAL-2075_features_hiddeng' into develop tree | commitdiff
2016-04-24 Jim ProcterJAL-2075 test showing hidden columns bug in feature... tree | commitdiff
2016-04-24 Jim ProcterJAL-2075 refactor FeatureScoreModel to native testNG... tree | commitdiff
2016-04-23 Jim ProcterJAL-2075 findPosition for SeqCigar (with test) tree | commitdiff
2016-04-22 tcofoegbuJAL-2071 further refactoring, optimisation, and house... tree | commitdiff
2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue tree | commitdiff
2016-04-22 gmungocJAL-2068 convenience helper method for graduated score... tree | commitdiff
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free... tree | commitdiff
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib... tree | commitdiff
2016-04-14 gmungocJAL-2041 clinical_significance shown on sequence featur... tree | commitdiff
2016-04-14 gmungocJAL-2049 revised computePeptideVariants to transfer... tree | commitdiff
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g.... tree | commitdiff
2016-04-14 gmungocJAL-653 test updated for 'use ID for description' tree | commitdiff
2016-04-13 Jim ProcterJAL-2046 test to demonstrate feature duplication bug tree | commitdiff
2016-04-13 Jim ProcterMerge branch 'bug/JAL-2046_ds_sharing_features_broken... tree | commitdiff
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test tree | commitdiff
2016-04-13 tcofoegbumerge tree | commitdiff
2016-04-13 tcofoegbuJAL-1270 Fixed failing tests due to race conditions... tree | commitdiff
2016-04-12 gmungocJAL-2049 separate protein variant per dna variant ... tree | commitdiff
2016-04-11 tcofoegbuJAL-2054 Renamed getStartEnd in AlignFrame to getVisibl... tree | commitdiff
2016-04-08 Jim ProcterMerge branch 'feature/JAL-2050_intronhidden' into develop tree | commitdiff
2016-04-08 Jim ProcterJAL-2050 JAL-1722 new getSelectedRange() method to... tree | commitdiff
2016-04-06 tcofoegbumerge tree | commitdiff
2016-04-06 tcofoegbuJAL-1960 updated test to capture new behaviour improvement tree | commitdiff
2016-04-05 Jim ProcterJAL-2046 RFC about cyclic dataset sequence references... tree | commitdiff
2016-04-05 Jim ProcterJAL-2046 revise test for ambiguous case tree | commitdiff
2016-04-05 Jim ProcterJAL-2046 ambiguous test for addSequenceFeature when... tree | commitdiff
2016-04-05 Jim ProcterJAL-2046 RFC on addSequenceFeature behaviour after... tree | commitdiff
2016-04-05 Jim ProcterJAL-2046 test behaviour of copy constructor in differen... tree | commitdiff
2016-04-04 Jim ProcterJAL-2046 basic test to make sure any derived sequence... tree | commitdiff
2016-04-04 Jim ProcterJAL-2001 faster getMax/getMin selected column, with... tree | commitdiff
2016-04-01 gmungocJAL-1705 ensure the right mapping is used to align... tree | commitdiff
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-04-01 gmungocJAL-2046 fix for broken test for deriveSequence tree | commitdiff
2016-04-01 gmungocJAL-1705 reworked AlignmentUtils.makeCdsAlignment and... tree | commitdiff
2016-04-01 gmungocJAL-653 updated test to match parsing of multi-valued... tree | commitdiff
2016-04-01 gmungocJAL-1705 tweak to MapList.toString for debugging tree | commitdiff
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1... tree | commitdiff
2016-04-01 gmungocJAL-1705 test updated for canonicalised UNIPROT sequenc... tree | commitdiff
2016-04-01 gmungocJAL-2037 set DBRefEntry.version to "0" not "" in EMBL... tree | commitdiff
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms) tree | commitdiff
2016-03-28 tcofoegbuJAL-1919 Fixed broken test in DBRefUtilsTest tree | commitdiff
2016-03-23 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-03-23 gmungocJAL-1705 add DBRefEntry for 'self' to retrieved transcr... tree | commitdiff
2016-03-22 tcofoegburesolve conflict with Mungo's merge tree | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-03-22 gmungocJAL-1191 isolated SequenceOntology (BioJava wrapper... tree | commitdiff
2016-03-22 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-03-21 tcofoegbuJAL-1919 refactor moved StructureViewerSettings tree | commitdiff
2016-03-21 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-03-15 gmungocJAL-2016 corrected Javadoc, added test for anonymous... tree | commitdiff
2016-03-15 gmungocJAL-1705 code tidy/comment only tree | commitdiff
2016-03-15 gmungocJAL-1705 compute reverse complement of variants on... tree | commitdiff
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings... tree | commitdiff
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-03-11 gmungocJAL-1270 unit test for SequenceIdMatcher.SeqIdName tree | commitdiff
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot tree | commitdiff
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi... tree | commitdiff
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 fixed bug causing PDBfile test failure tree | commitdiff
2016-03-03 gmungocJAL-1705 unit test for aligning with incomplete start... tree | commitdiff
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support... tree | commitdiff
2016-03-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts tree | commitdiff
2016-02-26 tcofoegbudevelop merge tree | commitdiff
2016-02-26 tcofoegbuJAL-1994 fix for broken tests tree | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... tree | commitdiff
2016-02-19 gmungocJAL-1705 regular expression updates, tests, other refac... tree | commitdiff
2016-02-19 gmungocJAL-1705 updated for change to CrossRef signature tree | commitdiff
2016-02-19 gmungocJAL-1705 return Ensembl genes for model species for... tree | commitdiff
2016-02-19 gmungocJAL-1705 lenient DBRef matcher added (accession id... tree | commitdiff
2016-02-19 gmungocJAL-1705 helper method for mapping excluding stop codon tree | commitdiff
2016-02-12 gmungocJAL-1270 remove trailing space + test tree | commitdiff
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl... tree | commitdiff
2016-02-12 gmungocJAL-1191 additions to SOLite, tweak to test tree | commitdiff
2016-02-12 gmungocJAL-1705 JAL-1686 stronger SequenceFeature.equals(... tree | commitdiff
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed... tree | commitdiff
2016-02-09 tcofoegbumerge develop tree | commitdiff
2016-02-04 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-04 gmungocJAL-2005 added (stable) sort methods parameterised by tree | commitdiff
2016-02-04 gmungocJAL-1705 additional tests, validation regexp tweaks... tree | commitdiff
2016-02-01 gmungocJAL-1705 further unit tests tree | commitdiff
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-01 gmungocJAL-1705 tests added tree | commitdiff
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard... tree | commitdiff
2016-01-28 gmungocJAL-1705 refine feature copying to including 5' and... tree | commitdiff
2016-01-28 gmungocJAL-1705 tests added, minor bugfix and refactoring tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-28 gmungocJAL-1705 merge contiguous ranges when constructing... tree | commitdiff
2016-01-27 gmungocJAL-1705 use GET for single queries; set gene name... tree | commitdiff
2016-01-26 tcofoegbudevelop merge tree | commitdiff
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring tree | commitdiff
2016-01-21 gmungocJAL-1705 reworked Ensembl clients now fetching and... tree | commitdiff
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