| 2016-03-15 |
gmungoc | JAL-2016 corrected Javadoc, added test for anonymous... |
tree | commitdiff |
| 2016-03-15 |
gmungoc | JAL-1705 code tidy/comment only |
tree | commitdiff |
| 2016-03-15 |
gmungoc | JAL-1705 compute reverse complement of variants on... |
tree | commitdiff |
| 2016-03-11 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
| 2016-03-11 |
gmungoc | JAL-1270 unit test for SequenceIdMatcher.SeqIdName |
tree | commitdiff |
| 2016-03-11 |
gmungoc | JAL-1705 refactoring etc for fetching Ensembl --> Uniprot |
tree | commitdiff |
| 2016-03-07 |
gmungoc | JAL-2023 CDS sequences added to / share alignment dataset |
tree | commitdiff |
| 2016-03-03 |
gmungoc | JAL-1705 unit test for aligning with incomplete start... |
tree | commitdiff |
| 2016-03-03 |
gmungoc | JAL-1705 include stop codons in derived CDS; support... |
tree | commitdiff |
| 2016-03-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
| 2016-03-01 |
gmungoc | JAL-1705 align CDS and peptide products to transcripts |
tree | commitdiff |
| 2016-02-26 |
tcofoegbu | JAL-1994 fix for broken tests |
tree | commitdiff |
| 2016-02-19 |
gmungoc | JAL-1705 regular expression updates, tests, other refac... |
tree | commitdiff |
| 2016-02-19 |
gmungoc | JAL-1705 updated for change to CrossRef signature |
tree | commitdiff |
| 2016-02-19 |
gmungoc | JAL-1705 return Ensembl genes for model species for... |
tree | commitdiff |
| 2016-02-19 |
gmungoc | JAL-1705 lenient DBRef matcher added (accession id... |
tree | commitdiff |
| 2016-02-19 |
gmungoc | JAL-1705 helper method for mapping excluding stop codon |
tree | commitdiff |
| 2016-02-12 |
gmungoc | JAL-1270 remove trailing space + test |
tree | commitdiff |
| 2016-02-12 |
gmungoc | JAL-1705 various refactoring towards Uniprot-to-Ensembl... |
tree | commitdiff |
| 2016-02-12 |
gmungoc | JAL-1191 additions to SOLite, tweak to test |
tree | commitdiff |
| 2016-02-12 |
gmungoc | JAL-1705 JAL-1686 stronger SequenceFeature.equals(... |
tree | commitdiff |
| 2016-02-12 |
gmungoc | JAL-2008 avoid unnecessary repaints; signatures changed... |
tree | commitdiff |
| 2016-02-04 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
| 2016-02-04 |
gmungoc | JAL-2005 added (stable) sort methods parameterised by |
tree | commitdiff |
| 2016-02-04 |
gmungoc | JAL-1705 additional tests, validation regexp tweaks... |
tree | commitdiff |
| 2016-02-01 |
gmungoc | JAL-1705 further unit tests |
tree | commitdiff |
| 2016-02-01 |
gmungoc | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
| 2016-02-01 |
gmungoc | JAL-1705 tests added |
tree | commitdiff |
| 2016-02-01 |
gmungoc | JAL-1705 JAL-1191 SequenceOntologyLite added as hard... |
tree | commitdiff |
| 2016-01-28 |
gmungoc | JAL-1705 refine feature copying to including 5' and... |
tree | commitdiff |
| 2016-01-28 |
gmungoc | JAL-1705 tests added, minor bugfix and refactoring |
tree | commitdiff |
| 2016-01-28 |
gmungoc | Merge branch 'develop' into JAL-1705_trialMerge |
tree | commitdiff |
| 2016-01-28 |
gmungoc | JAL-1705 merge contiguous ranges when constructing... |
tree | commitdiff |
| 2016-01-27 |
gmungoc | JAL-1705 use GET for single queries; set gene name... |
tree | commitdiff |
| 2016-01-25 |
gmungoc | JAL-1705 EnsemblGene added, and related refactoring |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 reworked Ensembl clients now fetching and... |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 removed (only) usage of otherwise unused constant |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 features transferred to CDS sequence; makeExon... |
tree | commitdiff |
| 2016-01-21 |
tcofoegbu | JAL-1479 JAL-1979 updated the modified-aminoacid triple... |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 tidy and todo comment, no functional change |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 tests for amended toString |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 isFromForwardStrand added; toString (for debug... |
tree | commitdiff |
| 2016-01-21 |
gmungoc | JAL-1705 canonicalise ENSEMBL name; code tidy |
tree | commitdiff |
| 2016-01-11 |
gmungoc | JAL-1989 map hidden column ranges |
tree | commitdiff |
| 2016-01-11 |
gmungoc | JAL-1989 more unit tests and encapsulation for ColumnSe... |
tree | commitdiff |
| 2016-01-08 |
gmungoc | JAL-1705 DbSourceProxy properties converted to methods... |
tree | commitdiff |
| 2016-01-07 |
tcofoegbu | merge |
tree | commitdiff |
| 2016-01-07 |
tcofoegbu | JAL-1479 implemented timestamp based caching of SIFTS... |
tree | commitdiff |
| 2016-01-05 |
gmungoc | JAL-653 updating 'align as' tests to match latest tweak... |
tree | commitdiff |
| 2016-01-05 |
gmungoc | Merge remote-tracking branch 'origin/features/JAL-1705_... |
tree | commitdiff |
| 2016-01-05 |
gmungoc | JAL-1191 check for obsolete term when descriptions... |
tree | commitdiff |
| 2015-12-23 |
gmungoc | JAL-1191 zipped SO OBO file added to /resources, more... |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-1191 more test cases |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-1191 SequenceOntology wrapping/caching SO.OBO via... |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-653 realise virtual mappings and align when adding... |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-391 new Calculate options to Reverse, Reverse Compl... |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-653 AlignedCodonFrame collections changed from... |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-653 GFF new/refactored helper classes |
tree | commitdiff |
| 2015-12-22 |
gmungoc | JAL-653 AlignedCodonFrame internal refactor, merge... |
tree | commitdiff |
| 2015-12-03 |
gmungoc | JAL-653 code tidy / tests for 'realise gff mappings' |
tree | commitdiff |
| 2015-12-03 |
gmungoc | JAL-653 handle reverse strand mapping in SearchResults... |
tree | commitdiff |
| 2015-12-03 |
gmungoc | JAL-653 mappings always reside on the dataset alignment... |
tree | commitdiff |
| 2015-12-03 |
gmungoc | JAL-653 handle reverse strand mappings also |
tree | commitdiff |
| 2015-12-03 |
gmungoc | JAL-1827 code and comment tidy up |
tree | commitdiff |
| 2015-12-02 |
gmungoc | JAL-1827 refactored to handle missing residues better |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-653 test for 'resolving GFF mappings to sequences... |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-653 (experimental) methods to resolve dummy to... |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-1270 constructor test added |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-653 getStrand javadoc/refactor/test |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-1270 constructor tests added, compiler warnings... |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-652 further refactoring / tests |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-652 correct case for test file name |
tree | commitdiff |
| 2015-11-30 |
gmungoc | JAL-653 MapList constructor merges any contiguous ranges |
tree | commitdiff |
| 2015-11-23 |
gmungoc | JAL-653 Gff tests moved back in to FeaturesFileTest |
tree | commitdiff |
| 2015-11-22 |
gmungoc | JAL-653 test for 'groups file' and mixed Jalview/GFF |
tree | commitdiff |
| 2015-11-21 |
gmungoc | JAL-653 JAL-1968 FeaturesFile now handles Jalview or... |
tree | commitdiff |
| 2015-11-16 |
tcofoegbu | JAL-1967 JAL-1479 refactored sequence<->structure mappi... |
tree | commitdiff |
| 2015-11-13 |
tcofoegbu | JAL-1479 added transfer of residue annotation for SIFTS... |
tree | commitdiff |
| 2015-11-11 |
tcofoegbu | merge |
tree | commitdiff |
| 2015-11-11 |
tcofoegbu | JAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping |
tree | commitdiff |
| 2015-11-06 |
gmungoc | JAL-1946 unit tests (and comments) for PID() function |
tree | commitdiff |
| 2015-11-06 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
| 2015-11-05 |
tcofoegbu | JAL-1479 SiftClient house keeping |
tree | commitdiff |
| 2015-11-05 |
tcofoegbu | JAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc... |
tree | commitdiff |
| 2015-11-02 |
tcofoegbu | JAL-1955 Uniprot sequence fetcher refactor |
tree | commitdiff |
| 2015-10-30 |
Jim Procter | JAL-1954 formatting |
tree | commitdiff |
| 2015-10-28 |
Jim Procter | JAL-1954 test PFAM import results in AlignmentI.hasVali... |
tree | commitdiff |
| 2015-10-28 |
tcofoegbu | JAL-1479 added support for SIFTs mapping output viewing... |
tree | commitdiff |
| 2015-10-28 |
tcofoegbu | JAL-1887 JAL-1479 bugfix for incorrect start/end for... |
tree | commitdiff |
| 2015-10-28 |
gmungoc | JAL-1946 additional unit test cases for PID calculation |
tree | commitdiff |
| 2015-10-22 |
tcofoegbu | JAL-1479 added basic support for SIFTs mapping - more... |
tree | commitdiff |
| 2015-10-22 |
gmungoc | JAL-1932 TrimRegionCommand bug fix, tests and purge... |
tree | commitdiff |
| 2015-10-15 |
Jim Procter | JAL-653 JAL-1766 merge 290b1 - fix erroneous conflicts... |
tree | commitdiff |
| 2015-10-15 |
Jim Procter | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
| 2015-10-15 |
Jim Procter | Merge branch 'develop' into features/JAL-1705_ensembl |
tree | commitdiff |
| 2015-10-15 |
tcofoegbu | JAL-1479 refactored SequenceI interface - changed getDB... |
tree | commitdiff |
| 2015-10-08 |
Jim Procter | JAL-1894 add licensing |
tree | commitdiff |
| 2015-10-08 |
Jim Procter | JAL-1894 formatting |
tree | commitdiff |
| 2015-10-08 |
Jim Procter | JAL-1894 organise imports |
tree | commitdiff |
| 2015-10-05 |
Jim Procter | Merge branch 'develop' into features/JAL-1912_biojson... |
tree | commitdiff |
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git://source.jalview.org / jalview.git / history