jalview.git
4 years agoMerge branch 'releases/Release_2_11_1_Branch'
Jim Procter [Wed, 22 Apr 2020 10:43:00 +0000 (11:43 +0100)]
Merge branch 'releases/Release_2_11_1_Branch'

4 years agoMerge branch 'documentation/JAL-3407_2.11.1_release' into releases/Release_2_11_1_Branch Release_2_11_1_0
Jim Procter [Tue, 21 Apr 2020 23:07:33 +0000 (00:07 +0100)]
Merge branch 'documentation/JAL-3407_2.11.1_release' into releases/Release_2_11_1_Branch

4 years agoJAL-3407 add GPL license to Jalview source files
Jim Procter [Tue, 21 Apr 2020 23:06:07 +0000 (00:06 +0100)]
JAL-3407 add GPL license to Jalview source files

4 years agoJAL-3407 release notes - JAL-247 - for auto-set-ID, and revise wording for transferri...
Jim Procter [Tue, 21 Apr 2020 23:03:25 +0000 (00:03 +0100)]
JAL-3407 release notes - JAL-247 - for auto-set-ID, and revise wording for transferring virtual features in chimera

4 years agoMerge branch 'documentation/JAL-3407_2.11.1_release' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 21 Apr 2020 20:19:35 +0000 (21:19 +0100)]
Merge branch 'documentation/JAL-3407_2.11.1_release' into releases/Release_2_11_1_Branch

4 years agoJAL-3407 fix JAL-3574 - remove from known issues for 2.11.1.0
Jim Procter [Tue, 21 Apr 2020 20:18:56 +0000 (21:18 +0100)]
JAL-3407 fix JAL-3574 - remove from known issues for 2.11.1.0

4 years agoMerge branch 'documentation/JAL-3407_2.11.1_release' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 21 Apr 2020 17:23:57 +0000 (18:23 +0100)]
Merge branch 'documentation/JAL-3407_2.11.1_release' into releases/Release_2_11_1_Branch

4 years agoJAL-3574 JAL-3407 release notes
Jim Procter [Tue, 21 Apr 2020 17:23:11 +0000 (18:23 +0100)]
JAL-3574 JAL-3407 release notes

4 years agoMerge branch 'bug/JAL-3574filterByPOS' into documentation/JAL-3407_2.11.1_release
Jim Procter [Tue, 21 Apr 2020 17:06:17 +0000 (18:06 +0100)]
Merge branch 'bug/JAL-3574filterByPOS' into documentation/JAL-3407_2.11.1_release

4 years agoMerge branch 'develop' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 21 Apr 2020 17:04:40 +0000 (18:04 +0100)]
Merge branch 'develop' into releases/Release_2_11_1_Branch

4 years agoMerge branch 'documentation/JAL-3407_2.11.1_release' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 21 Apr 2020 17:04:33 +0000 (18:04 +0100)]
Merge branch 'documentation/JAL-3407_2.11.1_release' into releases/Release_2_11_1_Branch

4 years agoMerge branch 'documentation/JAL-3407_2.11.1_release' into develop
Jim Procter [Tue, 21 Apr 2020 17:03:45 +0000 (18:03 +0100)]
Merge branch 'documentation/JAL-3407_2.11.1_release' into develop

4 years agoJAL-3407 add and document ComputePeptideVariants.groovy
Jim Procter [Tue, 21 Apr 2020 16:39:33 +0000 (17:39 +0100)]
JAL-3407 add and document ComputePeptideVariants.groovy

4 years agoJAL-3577 changed default RELEASE dir in build.gradle to use absolute path to help...
Ben Soares [Tue, 21 Apr 2020 14:37:32 +0000 (15:37 +0100)]
JAL-3577 changed default RELEASE dir in build.gradle to use absolute path to help buildship when importing project for first time

4 years agoMerge branch 'develop' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 21 Apr 2020 13:16:50 +0000 (14:16 +0100)]
Merge branch 'develop' into releases/Release_2_11_1_Branch

4 years agoMerge branch 'develop' of http://source.jalview.org/git/jalview into develop
Jim Procter [Tue, 21 Apr 2020 13:16:17 +0000 (14:16 +0100)]
Merge branch 'develop' of source.jalview.org/git/jalview into develop

4 years agoMerge branch 'develop' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 21 Apr 2020 13:15:07 +0000 (14:15 +0100)]
Merge branch 'develop' into releases/Release_2_11_1_Branch

4 years agoJAL-3567 JAL-3407 document sequence features report and the additional info provided...
Jim Procter [Tue, 21 Apr 2020 13:10:22 +0000 (14:10 +0100)]
JAL-3567 JAL-3407 document sequence features report and the additional info provided for virtual features. Also bumped release date to 22st April

4 years agoJAL-3577 Added newer install dirs to the deletion list in the uninstaller and tidied...
Ben Soares [Tue, 21 Apr 2020 11:07:53 +0000 (12:07 +0100)]
JAL-3577 Added newer install dirs to the deletion list in the uninstaller and tidied the list

4 years agoMerge branch 'bug/JAL-3567virtualFeatureCoordinates' into develop
Jim Procter [Tue, 21 Apr 2020 10:58:30 +0000 (11:58 +0100)]
Merge branch 'bug/JAL-3567virtualFeatureCoordinates' into develop

4 years agoJAL-367 code tidy
Jim Procter [Tue, 21 Apr 2020 10:48:44 +0000 (11:48 +0100)]
JAL-367 code tidy

4 years agoJAL-3567 translated rather than imputed peptide
Jim Procter [Tue, 21 Apr 2020 10:48:35 +0000 (11:48 +0100)]
JAL-3567 translated rather than imputed peptide

4 years agoJAL-3567 unit tests for linked feature tooltips
gmungoc [Fri, 17 Apr 2020 13:00:10 +0000 (14:00 +0100)]
JAL-3567 unit tests for linked feature tooltips

4 years agoJAL-3567 adjust layout of linked feature report, unit test
gmungoc [Thu, 16 Apr 2020 17:43:21 +0000 (18:43 +0100)]
JAL-3567 adjust layout of linked feature report, unit test

4 years agoJAL-3567 added 'imputed by Jalview' to protein consequence in report
gmungoc [Thu, 16 Apr 2020 16:37:46 +0000 (17:37 +0100)]
JAL-3567 added 'imputed by Jalview' to protein consequence in report

4 years agoJAL-3567 report mapped location for virtual features in tooltip etc
gmungoc [Thu, 16 Apr 2020 15:11:23 +0000 (16:11 +0100)]
JAL-3567 report mapped location for virtual features in tooltip etc

4 years agoMerge branch 'develop' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 14 Apr 2020 15:39:04 +0000 (16:39 +0100)]
Merge branch 'develop' into releases/Release_2_11_1_Branch

4 years agoJAL-3407 JAL-3529 release notes
Jim Procter [Tue, 14 Apr 2020 15:38:39 +0000 (16:38 +0100)]
JAL-3407 JAL-3529 release notes

4 years agoMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into develop
Jim Procter [Tue, 14 Apr 2020 15:33:50 +0000 (16:33 +0100)]
Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into develop

4 years agoJAL-3529 revert ordering of DBRef addition so it reflects situation after Pfam import...
Jim Procter [Tue, 14 Apr 2020 15:33:22 +0000 (16:33 +0100)]
JAL-3529 revert ordering of DBRef addition so it reflects situation after Pfam import </picky>

4 years agoMerge branch 'develop' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 14 Apr 2020 15:09:51 +0000 (16:09 +0100)]
Merge branch 'develop' into releases/Release_2_11_1_Branch

4 years agoJAL-3597 improved Memory test suite by detecting base memory usage rather than assumi...
Jim Procter [Tue, 14 Apr 2020 12:50:54 +0000 (13:50 +0100)]
JAL-3597 improved Memory test suite by detecting base memory usage rather than assuming it is constant for each release.

4 years agoMerge branch 'develop' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 14 Apr 2020 12:24:46 +0000 (13:24 +0100)]
Merge branch 'develop' into releases/Release_2_11_1_Branch

4 years agoJAL-3407 release date set to 16th April, known issue report for JAL-3574
Jim Procter [Tue, 14 Apr 2020 12:21:38 +0000 (13:21 +0100)]
JAL-3407 release date set to 16th April, known issue report for JAL-3574

4 years agoMerge branch 'testing/JAL-3577_jalviewversion_autoset_fixed' into develop
Jim Procter [Tue, 14 Apr 2020 11:25:20 +0000 (12:25 +0100)]
Merge branch 'testing/JAL-3577_jalviewversion_autoset_fixed' into develop

4 years agoJAL-3574 test coverage corners bug/JAL-3574filterByPOS
gmungoc [Mon, 13 Apr 2020 15:42:42 +0000 (16:42 +0100)]
JAL-3574 test coverage corners

4 years agoJAL-3574 Matcher with integer/long value pattern (e.g. VCF POS locus)
gmungoc [Mon, 13 Apr 2020 11:45:38 +0000 (12:45 +0100)]
JAL-3574 Matcher with integer/long value pattern (e.g. VCF POS locus)

4 years agoJAL-3596 change redacted
gmungoc [Sun, 12 Apr 2020 14:43:21 +0000 (15:43 +0100)]
JAL-3596 change redacted

4 years agoJAL-3596 don't draw text over features if Show Text is unselected
gmungoc [Sun, 12 Apr 2020 12:24:24 +0000 (13:24 +0100)]
JAL-3596 don't draw text over features if Show Text is unselected

4 years agoJAL-3588 Remove Examples folder in windows Program Group for all CHANNEL values
Ben Soares [Thu, 9 Apr 2020 13:32:03 +0000 (14:32 +0100)]
JAL-3588 Remove Examples folder in windows Program Group for all CHANNEL values

4 years agoJAL-3577 automatically configure JALVIEW_VERSION for builds using jalview.version... testing/JAL-3577_jalviewversion_autoset_fixed
Jim Procter [Thu, 9 Apr 2020 11:04:07 +0000 (12:04 +0100)]
JAL-3577 automatically configure JALVIEW_VERSION for builds using jalview.version property in RELEASE file

4 years agoJAL-3577 improvement to non-release DMG background and source SVG. Updated docs on... task/JAL-3577_Jalview_Test_installers
Ben Soares [Tue, 7 Apr 2020 13:24:02 +0000 (14:24 +0100)]
JAL-3577 improvement to non-release DMG background and source SVG. Updated docs on image specification/creation.

4 years agoMerge branch 'task/JAL-3577_Jalview_Test_installers' into develop
Ben Soares [Tue, 7 Apr 2020 00:30:12 +0000 (01:30 +0100)]
Merge branch 'task/JAL-3577_Jalview_Test_installers' into develop

4 years agoJAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEASE and NON-RELEASE styling
Ben Soares [Tue, 7 Apr 2020 00:29:33 +0000 (01:29 +0100)]
JAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEASE and NON-RELEASE styling

4 years agoJAL-3577 Fixed Jalview Programme Group in Windows menu. Added examples folder for...
Ben Soares [Mon, 6 Apr 2020 21:34:06 +0000 (22:34 +0100)]
JAL-3577 Fixed Jalview Programme Group in Windows menu. Added examples folder for RELEASE channel only and Examples folder in Jalview Programme Group in Windows.

4 years agoMerge branch 'develop' into releases/Release_2_11_1_Branch
Jim Procter [Mon, 6 Apr 2020 16:48:32 +0000 (17:48 +0100)]
Merge branch 'develop' into releases/Release_2_11_1_Branch

4 years agoJAL-3407 redact java 8 incompatible type inference
Jim Procter [Mon, 6 Apr 2020 16:47:45 +0000 (17:47 +0100)]
JAL-3407 redact java 8 incompatible type inference

4 years agoMerge branch 'develop' into releases/Release_2_11_1_Branch
Jim Procter [Mon, 6 Apr 2020 16:27:29 +0000 (17:27 +0100)]
Merge branch 'develop' into releases/Release_2_11_1_Branch

4 years agoJAL-3407 updated release date to Thursday 9th April, and release notes for JAL-3577...
Jim Procter [Mon, 6 Apr 2020 16:25:35 +0000 (17:25 +0100)]
JAL-3407 updated release date to Thursday 9th April, and release notes for JAL-3577 JAL-3581 JAL-3571

4 years agoJAL-3581 no hidden sequence marker if hidden markers not shown
gmungoc [Mon, 6 Apr 2020 14:58:33 +0000 (15:58 +0100)]
JAL-3581 no hidden sequence marker if hidden markers not shown

4 years agoJAL-3577 Moved application Categories for freedesktop menus into correct place in...
Ben Soares [Mon, 6 Apr 2020 14:49:30 +0000 (15:49 +0100)]
JAL-3577 Moved application Categories for freedesktop menus into correct place in install4j

4 years agoJAL-3577 removed debugging
Ben Soares [Mon, 6 Apr 2020 12:32:30 +0000 (13:32 +0100)]
JAL-3577 removed debugging

4 years agoMerge branch 'task/JAL-3577_Jalview_Test_installers' into develop
Ben Soares [Mon, 6 Apr 2020 12:29:40 +0000 (13:29 +0100)]
Merge branch 'task/JAL-3577_Jalview_Test_installers' into develop

4 years agoJAL-3577 Added existing and new Application IDs for Windows. Fixed Desktop shortcut...
Ben Soares [Mon, 6 Apr 2020 12:27:56 +0000 (13:27 +0100)]
JAL-3577 Added existing and new Application IDs for Windows. Fixed Desktop shortcut and Menu entry.

4 years agoJAL-3579 no Feature Editor if features not shown
gmungoc [Mon, 6 Apr 2020 09:18:17 +0000 (10:18 +0100)]
JAL-3579 no Feature Editor if features not shown

4 years agoMerge branch 'develop' into releases/Release_2_11_1_Branch
Jim Procter [Mon, 6 Apr 2020 08:20:49 +0000 (09:20 +0100)]
Merge branch 'develop' into releases/Release_2_11_1_Branch

4 years agoJAL-3577 Changed shortName to INTERNAL_ID
Ben Soares [Mon, 6 Apr 2020 08:20:35 +0000 (09:20 +0100)]
JAL-3577 Changed shortName to INTERNAL_ID

4 years agoJAL-3577 Changed Windows internal ID to a new value which is backward compatible...
Ben Soares [Sun, 5 Apr 2020 09:50:46 +0000 (10:50 +0100)]
JAL-3577 Changed Windows internal ID to a new value which is backward compatible with the 2.11.0 installation. i.e. release versions will have internal ID 'Jalview'

4 years agoJAL-3577 Changed Windows internal ID to a new value which is backward compatible...
Ben Soares [Sun, 5 Apr 2020 09:50:12 +0000 (10:50 +0100)]
JAL-3577 Changed Windows internal ID to a new value which is backward compatible with the 2.11.0 installation. i.e. release versions will have internal ID 'Jalview'

4 years agoJAL-3577 Added DS_Store for Test release to look like proper installer
Ben Soares [Sat, 4 Apr 2020 00:01:39 +0000 (01:01 +0100)]
JAL-3577 Added DS_Store for Test release to look like proper installer

4 years agoJAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE and TEST-LOCAL channels so...
Ben Soares [Fri, 3 Apr 2020 16:04:30 +0000 (17:04 +0100)]
JAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE and TEST-LOCAL channels so that a test jvl can be made to ONLY open in the Test installation

4 years agoJAL-3577 cleaned up old DMG files. Added NON-RELEASE DMG files. Changed how Jalview...
Ben Soares [Fri, 3 Apr 2020 15:44:56 +0000 (16:44 +0100)]
JAL-3577 cleaned up old DMG files. Added NON-RELEASE DMG files. Changed how Jalview name propogates through install4j -- now dynamically created depending on the CHANNEL

4 years agoJAL-3577 First attempt at new folder names
Ben Soares [Thu, 2 Apr 2020 23:41:49 +0000 (00:41 +0100)]
JAL-3577 First attempt at new folder names

4 years agoMerge branch 'develop' into releases/Release_2_11_1_Branch
Jim Procter [Thu, 2 Apr 2020 16:11:10 +0000 (17:11 +0100)]
Merge branch 'develop' into releases/Release_2_11_1_Branch

4 years agoJAL-3572 Added getdown Implementation-Version to getdown jars META-INF/MANIFEST.MF
Ben Soares [Thu, 2 Apr 2020 13:55:22 +0000 (14:55 +0100)]
JAL-3572 Added getdown Implementation-Version to getdown jars META-INF/MANIFEST.MF

4 years agoMerge branch 'improvement/JAL-3394_added_categories_to_unix_shell_installer_desktop_f...
Ben Soares [Thu, 2 Apr 2020 11:42:30 +0000 (12:42 +0100)]
Merge branch 'improvement/JAL-3394_added_categories_to_unix_shell_installer_desktop_file' into develop

4 years agoMerge branch 'documentation/Release_2_11_1_Branch' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 31 Mar 2020 22:15:32 +0000 (23:15 +0100)]
Merge branch 'documentation/Release_2_11_1_Branch' into releases/Release_2_11_1_Branch

4 years agoMerge branch 'documentation/Release_2_11_1_Branch' into develop
Jim Procter [Tue, 31 Mar 2020 22:10:44 +0000 (23:10 +0100)]
Merge branch 'documentation/Release_2_11_1_Branch' into develop

4 years agoJAL-3407 basic doc for releasing jalview - will be embellished as we go
Jim Procter [Tue, 31 Mar 2020 22:09:42 +0000 (23:09 +0100)]
JAL-3407 basic doc for releasing jalview - will be embellished as we go

4 years agoMerge branch 'documentation/Release_2_11_1_Branch' into releases/Release_2_11_1_Branch
Jim Procter [Tue, 31 Mar 2020 21:54:41 +0000 (22:54 +0100)]
Merge branch 'documentation/Release_2_11_1_Branch' into releases/Release_2_11_1_Branch

4 years agoJAL-3407 updated release date to 2nd April, and first draft of release notes
Jim Procter [Tue, 31 Mar 2020 21:53:24 +0000 (22:53 +0100)]
JAL-3407 updated release date to 2nd April, and first draft of release notes

4 years agoJAL-1889 better (?) wait for Conservation thread
gmungoc [Tue, 31 Mar 2020 13:41:15 +0000 (14:41 +0100)]
JAL-1889 better (?) wait for Conservation thread

4 years agoMerge branch 'documentation/Release_2_11_1_Branch' into develop
Jim Procter [Tue, 31 Mar 2020 09:25:54 +0000 (10:25 +0100)]
Merge branch 'documentation/Release_2_11_1_Branch' into develop

4 years agoJAL-3407 2.11.1.0 release date bump - maybe tomorrow - maybe the next day !
Jim Procter [Mon, 30 Mar 2020 17:03:30 +0000 (18:03 +0100)]
JAL-3407 2.11.1.0 release date bump - maybe tomorrow - maybe the next day !

4 years agoJAL-3407 JAL-3130 back out java 9+ syntax that breaks java 8 builds
Jim Procter [Mon, 30 Mar 2020 17:03:09 +0000 (18:03 +0100)]
JAL-3407 JAL-3130 back out java 9+ syntax that breaks java 8 builds

4 years agoJAL-3225 updated essential files for eclipse project if buildship fails
soares [Fri, 27 Mar 2020 16:08:13 +0000 (16:08 +0000)]
JAL-3225 updated essential files for eclipse project if buildship fails

4 years agoJAL-3225 Also look for local.properties in file named ../${projectDir}_local.properti...
Ben Soares [Thu, 26 Mar 2020 20:22:52 +0000 (20:22 +0000)]
JAL-3225 Also look for local.properties in file named ../${projectDir}_local.properties. This allows multiple instances of the same project in Eclipse by changing the eclipse_project_name propert (and other local properties)

4 years agoJAL-3225 This one file needed for project if git clean -dfx run
soares [Thu, 26 Mar 2020 17:37:44 +0000 (17:37 +0000)]
JAL-3225 This one file needed for project if git clean -dfx run

4 years agoJAL-3225 All of .settings now gitignored. org.eclipse...prefs made by buildship or...
Ben Soares [Thu, 26 Mar 2020 17:13:40 +0000 (17:13 +0000)]
JAL-3225 All of .settings now gitignored. org.eclipse...prefs made by buildship or gradle eclipse. Jalview specific prefs pulled in from utils/eclipse/org.eclipse.jdt.core.jalview.prefs

4 years agoJAL-3248 Added instructions for downloading and configuring as gradle project in...
Ben Soares [Wed, 25 Mar 2020 17:07:36 +0000 (17:07 +0000)]
JAL-3248 Added instructions for downloading and configuring as gradle project in Eclipse only, i.e. no command line tools needed

4 years agoJAL-3562 exclude testNG groups from a build via -PtestngExcludedGroups=Not-bamboo
Jim Procter [Fri, 20 Mar 2020 18:19:52 +0000 (18:19 +0000)]
JAL-3562 exclude testNG groups from a build via -PtestngExcludedGroups=Not-bamboo

4 years agoJAL-3407 JAL-3562 release notes
Jim Procter [Fri, 20 Mar 2020 18:01:57 +0000 (18:01 +0000)]
JAL-3407 JAL-3562 release notes

4 years agoJAL-3407 rejigging new features - simplify release note line for virtual features
Jim Procter [Fri, 20 Mar 2020 17:50:47 +0000 (17:50 +0000)]
JAL-3407 rejigging new features - simplify release note line for virtual features

4 years agoJAL-3407 reformat releases.html
Jim Procter [Fri, 20 Mar 2020 17:45:08 +0000 (17:45 +0000)]
JAL-3407 reformat releases.html

4 years agoJAL-3407 JAL-3549 javadoc
Jim Procter [Fri, 20 Mar 2020 17:27:01 +0000 (17:27 +0000)]
JAL-3407 JAL-3549 javadoc

4 years agoJAL-3407 - release notes for JAL-3547
Jim Procter [Fri, 20 Mar 2020 17:02:49 +0000 (17:02 +0000)]
JAL-3407 - release notes for JAL-3547

4 years agoJAL-3549 javadoc
Jim Procter [Fri, 20 Mar 2020 17:01:53 +0000 (17:01 +0000)]
JAL-3549 javadoc

4 years agoMerge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
gmungoc [Thu, 19 Mar 2020 16:05:57 +0000 (16:05 +0000)]
Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

4 years agoJAL-3541 increase maxheapsize for test worker process
Ben Soares [Thu, 19 Mar 2020 12:54:02 +0000 (12:54 +0000)]
JAL-3541 increase maxheapsize for test worker process

4 years agoJAL-3541 tidying build.gradle, delete cloverInstrDir re-added
Ben Soares [Thu, 19 Mar 2020 12:35:45 +0000 (12:35 +0000)]
JAL-3541 tidying build.gradle, delete cloverInstrDir re-added

4 years agoJAL-3305 don't propagate an empty SelectionGroup to complement view
gmungoc [Thu, 19 Mar 2020 12:29:46 +0000 (12:29 +0000)]
JAL-3305 don't propagate an empty SelectionGroup to complement view

4 years agoJAL-3541 put org.gradle.jvmargs explicitly into gradle.properties
Ben Soares [Thu, 19 Mar 2020 12:26:41 +0000 (12:26 +0000)]
JAL-3541 put org.gradle.jvmargs explicitly into gradle.properties

4 years agoJAL-3541 merged cleanClover with develop
Ben Soares [Wed, 18 Mar 2020 15:23:55 +0000 (15:23 +0000)]
JAL-3541 merged cleanClover with develop

4 years agoJAL-3541 perhaps a better clean for clover. fixed
Ben Soares [Wed, 18 Mar 2020 11:33:26 +0000 (11:33 +0000)]
JAL-3541 perhaps a better clean for clover. fixed

4 years agoJAL-3541 perhaps a better clean for clover
Ben Soares [Wed, 18 Mar 2020 11:21:37 +0000 (11:21 +0000)]
JAL-3541 perhaps a better clean for clover

4 years agoJAL-3541 rejigged clover tasks very mildly
Ben Soares [Tue, 17 Mar 2020 19:19:59 +0000 (19:19 +0000)]
JAL-3541 rejigged clover tasks very mildly

4 years agoRevert "JAL-3541 trying out previous cloverReport task"
Ben Soares [Tue, 17 Mar 2020 12:42:25 +0000 (12:42 +0000)]
Revert "JAL-3541 trying out previous cloverReport task"

This reverts commit dc70a1f7934471a4084c3f10e7bd630d72aa3bf3.

4 years agoJAL-3541 trying out previous cloverReport task
Ben Soares [Tue, 17 Mar 2020 11:28:17 +0000 (11:28 +0000)]
JAL-3541 trying out previous cloverReport task

4 years agoJAL-3407 JAL-3187 help documentation for virtual features and tabbed feature settings...
Jim Procter [Mon, 16 Mar 2020 17:51:38 +0000 (17:51 +0000)]
JAL-3407 JAL-3187 help documentation for virtual features and tabbed feature settings for linked cds/protein views

4 years agoJAL-3407 JAL-3549 explicitly mention the ‘no features’ dialog, and how an existing...
Jim Procter [Mon, 16 Mar 2020 17:42:45 +0000 (17:42 +0000)]
JAL-3407 JAL-3549 explicitly mention the ‘no features’ dialog, and how an existing selection affects the sort alignment by feature score/density