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JAL-1264 fix broken applet build dependencies
2015-03-30 gmungocJAL-1264 fix broken applet build dependencies
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2015-03-25 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-03-25 gmungocJAL-1264 adding show/hide annotation options to applet
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2015-03-23 gmungocJAL-1681 (import reorder only)
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2015-03-23 gmungocJAL-845 restore SplitFrame size from project; enable...
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2015-03-23 gmungocStringBuffer --> StringBuilder
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2015-03-23 gmungocMerge branch 'features/sequenceFeatureRefactor' into...
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2015-03-19 gmungocJAL-845 fix bug in 3-to-1 scaling of protein from cDNA
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2015-03-18 gmungocJAL-1680 small tidy
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2015-03-18 gmungocJAL-845 adjust both sides of split frame when changing...
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2015-03-18 gmungocJAL-1675 Chimera highlight side-chain; timeout added...
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2015-03-18 gmungocMerge hack/JAL-1617 fake DBRef to develop
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2015-03-18 gmungocJAL-845 map 'STOP' codons correctly
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2015-03-17 gmungocJAL-1687 ignore case when determining if sequence matches...
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2015-03-17 gmungocJAL-845 ensure cDNA consensus scales with font size
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2015-03-17 gmungocJAL-845 provide a moveable divider for SplitFrame ...
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2015-03-16 gmungocJAL-845 tweaks and bug fixes for split frame view
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2015-03-13 gmungocJAL-845 refinements + tests for making mappings between...
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2015-03-13 gmungocJAL-1686 @Override and/or TODO added to equals(Object...
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2015-03-13 gmungocJAL-1684 allow X in protein to map to untranslatable...
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2015-03-13 gmungocJAL-1685 fixed
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2015-03-12 gmungocJAL-1544 sequece now sequence
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2015-03-11 gmungocJAL-1684 better window size parameters; match up sequence...
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2015-03-11 gmungocJAL-1684 fix bug in AlignmentView constructor
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2015-03-11 gmungocJAL-1684 include JMOL jar for applet
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2015-03-11 gmungocJAL-1684 fix jars list, parameters for new example
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2015-03-11 gmungocJAL-845 start cDNA consensus on 'add alignment' (as...
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2015-03-11 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-03-11 gmungocJAL-1685 further tests
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2015-03-11 gmungocJAL-845 smarter test for 'mappability' when adding...
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2015-03-11 gmungocJAL-1421 changed Vector to List<String> for protein...
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2015-03-11 gmungocJAL-1685 tests added for ambiguity codes (including...
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2015-03-11 gmungocJAL-845 cDNA mapping: select on sequence translation...
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2015-03-11 gmungocJAL-845 handle no profile without NPE!
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2015-03-11 gmungocJAL-1684 applet example for SplitFrame view of cDNA...
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2015-03-10 gmungocJAL-1680 group consensus speeded up with a different...
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2015-03-10 gmungocJAL-1681 show cDNA consensus on protein alignment ...
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2015-03-05 gmungocMerge branch 'develop' into features/JAL-845splitPaneMergeDe...
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2015-03-05 gmungocJAL-845 minor tidy / tests / javadoc tweaks
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2015-03-05 gmungocJAL-1270 tests added
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2015-03-04 gmungocJAL-845 bug fixes correcting linked editing
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2015-03-03 gmungocJAL-845 refactor / typo fix
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2015-03-03 gmungocJAL-845 implement alignment of protein to match cDNA...
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2015-03-03 gmungocJAL-1452 nucleotide/protein default colour; JAL-845...
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2015-02-27 gmungocJAL-1452 distinct colour preferences for nucleotide...
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2015-02-27 gmungocJAL-845 SplitFrame for "show product" and after aligning...
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2015-02-25 gmungocJAL-1677 commenting use of AlignViewport.gatherViewsHere
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2015-02-24 gmungocJAL-1677 Castor source changes
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2015-02-24 gmungocJAL-845 set top and bottom seq id widths the same
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2015-02-24 gmungocJAL-1677 save/restore SplitFrame to Jalview project
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2015-02-23 gmungocJAL-845 repaint of complementary selection (applet)
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2015-02-23 gmungocJAL-1619 split frame now offered in applet 'input from...
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2015-02-20 gmungocJAL-1673 additional test (and trim of PDB resnum value)
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2015-02-20 gmungocJAL-1675 correct highlighting in Chimera for mouseover...
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2015-02-20 gmungocJAL-1665 create dataset sequences in applet
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2015-02-20 gmungocJAL-1674 update both status bars when mousing over...
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2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures
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2015-02-19 gmungocJAL-845 applet colour by tree; translate as cDNA; pull...
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2015-02-13 gmungocJAL-845 first rough applet SplitFrame (add parameter...
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2015-02-12 gmungocJAL-1633 set file format on 'translate cDNA'
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2015-02-12 gmungocMerge remote-tracking branch 'origin/merge/JAL-845_JAL...
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2015-02-11 gmungocJAL-845 handling eXpand/Gather split frame views
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2015-02-11 gmungocJAL-1264 button labels (for panel currently not linked...
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2015-02-10 gmungocJAL-1264 unit tests fixed (have to explicit set annotation...
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2015-02-09 gmungocMerge remote-tracking branch 'origin/develop' into
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2015-02-06 gmungocJAL-845 further code/tests/refactoring
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2015-02-03 gmungoccomment only
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2015-02-03 gmungocJAL-845 column mapping speed-up
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2015-02-03 gmungocJAL-845 SplitFrame key bindings delegation to AlignFrame...
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2015-02-03 gmungocJAL-845 preparation for awareness of AlignFrame in...
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2015-02-03 gmungocJAL-845 redundant 'map to self' removed from buildSearchResults
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2015-02-03 gmungocComments added
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2015-02-03 gmungocJAL-845 code/refactoring/tests related to linking DNA...
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2015-01-30 gmungocJAL-845 linked protein/dna 'slave' further PoC functionality
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2015-01-27 gmungocJAL-1588 new class renamed
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2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
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2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s)
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2015-01-23 gmungocJAL-1588 first working (?) restore of Chimera session...
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2015-01-23 gmungocJAL-1619 javadoc/tidy
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2015-01-23 gmungocJAL-1635 show warning if less than 3 columns selected...
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2015-01-23 gmungocRandom DNA generator tarted up
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2015-01-22 gmungocJAL-1619 refactoring / tests to support 'align linked...
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2015-01-20 gmungocJAL-1619 test that reordering cDNA does not change...
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2015-01-20 gmungocJAL-1619 tweaked for better reusability
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2015-01-19 gmungocJAL-1619 refactored cDNA translation; modified codon...
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2015-01-19 gmungocJAL-1636 typed collections now in ResidueProperties
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2015-01-19 gmungocJAL-1636 fix for mouseover of 'X' in translated protein
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2015-01-18 gmungocJAL-1619 refactoring wip
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2015-01-17 gmungocJAL-1619 further refactoring
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2015-01-16 gmungocJAL-1619 refactoring in progress for Dna translation
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2015-01-14 gmungocJAL-1619 AlignedCodonFrame in new alignment should...
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2015-01-14 gmungocJAL-1619 modified repaint after 'Align As' action
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2015-01-14 gmungocJAL-1619 Javadoc
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2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save...
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2015-01-12 gmungocJAL-1619 load/align cDNA for protein (wip)
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2015-01-09 gmungocJAL-1588 check Chimera session file still exists
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2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
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2015-01-07 gmungocJAL-845 TODO comment added
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2015-01-07 gmungocJAL-1551 formatting applied
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2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
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