git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
Merge branch 'releases/Release_2_11_1_Branch' of https://source.jalview.org/git/jalvi...
2020-03-05 gmungocMerge branch 'releases/Release_2_11_1_Branch' of https...
commit | commitdiff | tree
2020-03-05 gmungocJAL-3303 suppressed for 2.11.1
 commit | commitdiff | tree
2020-02-20 gmungocJAL-3187 repaint complement after loading on features
 commit | commitdiff | tree
2020-02-18 Mungo CarstairsJAL-3536 JAL-3187 don't create duplicate CDS-to-protein...
commit | commitdiff | tree
2020-01-28 gmungocJAL-3341 debug for failing unit test
 commit | commitdiff | tree
2020-01-28 gmungocMerge branch 'feature/JAL-3121gffAttributeMap' into...
commit | commitdiff | tree
2020-01-28 gmungocJAL-3187 one more obsolete method removed
 commit | commitdiff | tree
2020-01-24 gmungocJAL=3121 more data format validation/tests, help text...
commit | commitdiff | tree
2020-01-23 gmungocJAL-3121 update help page for GFF column 9 nested attributes
 commit | commitdiff | tree
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ...
commit | commitdiff | tree
2019-09-26 gmungocJAL-2481 remove code duplication left by merge
 commit | commitdiff | tree
2019-09-26 gmungocJAL-3441 action double-click in Feature Type column...
commit | commitdiff | tree
2019-08-23 gmungocJAL-3141 correct cast of spinner value
 commit | commitdiff | tree
2019-08-22 gmungocJAL-3121 slightly cleaner parsing of, and unit test...
commit | commitdiff | tree
2019-08-22 gmungocMerge branch 'develop' into feature/JAL-3121gffAttributeMap
 commit | commitdiff | tree
2019-08-22 gmungocJAL-3187 case-insensitive codon variant calculation
 commit | commitdiff | tree
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued...
commit | commitdiff | tree
2019-08-22 gmungocJAL-3187 one more obsolete method removed
 commit | commitdiff | tree
2019-08-21 gmungocJAL-3187 minor code tidying, todo removal
 commit | commitdiff | tree
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) transfer...
commit | commitdiff | tree
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored...
commit | commitdiff | tree
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
 commit | commitdiff | tree
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename...
commit | commitdiff | tree
2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'...
commit | commitdiff | tree
2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId()
 commit | commitdiff | tree
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence
 commit | commitdiff | tree
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless...
commit | commitdiff | tree
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry
 commit | commitdiff | tree
2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to...
commit | commitdiff | tree
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight()
 commit | commitdiff | tree
2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas
 commit | commitdiff | tree
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHeight()
 commit | commitdiff | tree
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into
 commit | commitdiff | tree
2019-07-26 gmungocJAL-1793 only decode specific special characters in...
commit | commitdiff | tree
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
commit | commitdiff | tree
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields
 commit | commitdiff | tree
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data
 commit | commitdiff | tree
2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
 commit | commitdiff | tree
2019-07-16 gmungocJAL-2987 tolerate null double values when formatting...
commit | commitdiff | tree
2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
 commit | commitdiff | tree
2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests
 commit | commitdiff | tree
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant...
commit | commitdiff | tree
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute...
commit | commitdiff | tree
2019-07-04 gmungocMerge branch 'develop' of https://source.jalview.org...
commit | commitdiff | tree
2019-07-04 gmungocJAL-3111 help pages minor corrections
 commit | commitdiff | tree
2019-06-18 gmungocJAL-3313 don't double count mapped codons
 commit | commitdiff | tree
2019-06-18 gmungocJAL-3187 javadoc
 commit | commitdiff | tree
2019-06-18 gmungocJAL-3304 option to export linked features also for...
commit | commitdiff | tree
2019-06-18 gmungocJAL-3304 option to export linked features in Jalview...
commit | commitdiff | tree
2019-06-18 gmungocJAL-3187 i18n show linked features checkboxes
 commit | commitdiff | tree
2019-06-18 gmungocJAL-3305 mirror popup menu column selections in split...
commit | commitdiff | tree
2019-06-17 gmungocJAL-2792 JAL-3187 linked features (if shown) in Feature...
commit | commitdiff | tree
2019-06-17 gmungocJAL-3187 update alignAs code and unit tests for 'shared...
commit | commitdiff | tree
2019-06-17 gmungocJAL-3187 update unit test - protein variants not now...
commit | commitdiff | tree
2019-06-17 gmungocJAL-3187 add sequence to feature details table (and...
commit | commitdiff | tree
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera
 commit | commitdiff | tree
2019-06-13 gmungocJAL-3303 ignore deletions when computing peptide variants
 commit | commitdiff | tree
2019-06-13 gmungocJAL-3143 recognise lnc_RNA as transcript
 commit | commitdiff | tree
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
 commit | commitdiff | tree
2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present
 commit | commitdiff | tree
2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
 commit | commitdiff | tree
2019-06-11 gmungocJAL-3111 update release date placeholder
 commit | commitdiff | tree
2019-06-11 gmungocJAL-3288 fixes for gain/lose focus
 commit | commitdiff | tree
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript
 commit | commitdiff | tree
2019-06-10 gmungocJAL-3296 ensure sequence cursor reset when sequence...
commit | commitdiff | tree
2019-06-07 gmungocJAL-3187 save and restore flags for show complement...
commit | commitdiff | tree
2019-06-07 gmungocJAL-3187 change fields to local variables
 commit | commitdiff | tree
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
 commit | commitdiff | tree
2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into...
commit | commitdiff | tree
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementFeatur...
commit | commitdiff | tree
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype...
commit | commitdiff | tree
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chromosoma...
commit | commitdiff | tree
2019-06-06 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into...
commit | commitdiff | tree
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from...
commit | commitdiff | tree
2019-06-06 gmungocMerge branch 'develop' into trialMerge
 commit | commitdiff | tree
2019-06-06 gmungocJAL-3187 commit to enable merge from develop
 commit | commitdiff | tree
2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid...
commit | commitdiff | tree
2019-06-04 gmungocJAL-2386 avoid duplicate pdbids in free text query
 commit | commitdiff | tree
2019-05-29 gmungocJAL-2738 error logging if no ##reference found
 commit | commitdiff | tree
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens...
commit | commitdiff | tree
2019-05-27 gmungocJAL-3141 test file in test folder not examples
 commit | commitdiff | tree
2019-05-24 gmungocJAL-1988 Spanish typo corrección
 commit | commitdiff | tree
2019-05-22 gmungocJAL-3111 help file spelling correction
 commit | commitdiff | tree
2019-05-21 gmungocJAL-3273 small correction to expected result calculation
 commit | commitdiff | tree
2019-05-06 gmungocJAL-3240 known issue for release notes
 commit | commitdiff | tree
2019-05-06 gmungocJAL-3239 release note
 commit | commitdiff | tree
2019-05-06 gmungocJAL-3244 release note
 commit | commitdiff | tree
2019-05-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-3239monospacedE...
commit | commitdiff | tree
2019-05-06 gmungocJAL-3244 delete obsolete method
 commit | commitdiff | tree
2019-05-02 gmungocJAL-3239 draw EPS or SVG one character at a time (even...
commit | commitdiff | tree
2019-05-02 gmungocMerge branch 'bug/JAL-3244jmolWindows' into develop
 commit | commitdiff | tree
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity
 commit | commitdiff | tree
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing...
commit | commitdiff | tree
2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadability...
commit | commitdiff | tree
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF...
commit | commitdiff | tree
2019-04-29 gmungocJAL-3003 help page mention EPS doesn't support transparency
 commit | commitdiff | tree
2019-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
commit | commitdiff | tree
2019-04-26 gmungocJAL-2743 class Javadoc
 commit | commitdiff | tree
2019-04-26 gmungocJAL-2738 JAL-2743 properties to map VCF header to species...
commit | commitdiff | tree
2019-04-26 gmungocJAL-3010 borderless 'x' for "delete this filter condition"
 commit | commitdiff | tree
next