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Merge branch 'features/JAL-3375vcfValidation' into
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into
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2019-07-26 gmungocJAL-1793 only decode specific special characters in...
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2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
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2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields
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2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data
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2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-07-16 gmungocJAL-2987 tolerate null double values when formatting...
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2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests
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2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant...
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2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute...
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2019-07-04 gmungocMerge branch 'develop' of https://source.jalview.org...
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2019-07-04 gmungocJAL-3111 help pages minor corrections
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2019-06-18 gmungocJAL-3313 don't double count mapped codons
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2019-06-18 gmungocJAL-3187 javadoc
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2019-06-18 gmungocJAL-3304 option to export linked features also for...
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2019-06-18 gmungocJAL-3304 option to export linked features in Jalview...
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2019-06-18 gmungocJAL-3187 i18n show linked features checkboxes
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2019-06-18 gmungocJAL-3305 mirror popup menu column selections in split...
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2019-06-17 gmungocJAL-2792 JAL-3187 linked features (if shown) in Feature...
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2019-06-17 gmungocJAL-3187 update alignAs code and unit tests for 'shared...
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2019-06-17 gmungocJAL-3187 update unit test - protein variants not now...
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2019-06-17 gmungocJAL-3187 add sequence to feature details table (and...
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2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera
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2019-06-13 gmungocJAL-3303 ignore deletions when computing peptide variants
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2019-06-13 gmungocJAL-3143 recognise lnc_RNA as transcript
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2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present
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2019-06-11 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-11 gmungocJAL-3111 update release date placeholder
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2019-06-11 gmungocJAL-3288 fixes for gain/lose focus
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2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript
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2019-06-07 gmungocJAL-3187 save and restore flags for show complement...
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2019-06-07 gmungocJAL-3187 change fields to local variables
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2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into...
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2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementFeatur...
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2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype...
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2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chromosoma...
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2019-06-06 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into...
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2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from...
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2019-06-06 gmungocMerge branch 'develop' into trialMerge
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2019-06-06 gmungocJAL-3187 commit to enable merge from develop
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2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid...
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2019-06-04 gmungocJAL-2386 avoid duplicate pdbids in free text query
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2019-05-29 gmungocJAL-2738 error logging if no ##reference found
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2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens...
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2019-05-27 gmungocJAL-3141 test file in test folder not examples
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2019-05-24 gmungocJAL-1988 Spanish typo corrección
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2019-05-22 gmungocJAL-3111 help file spelling correction
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2019-05-21 gmungocJAL-3273 small correction to expected result calculation
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2019-05-06 gmungocJAL-3240 known issue for release notes
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2019-05-06 gmungocJAL-3239 release note
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2019-05-06 gmungocJAL-3244 release note
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2019-05-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-3239monospacedE...
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2019-05-06 gmungocJAL-3244 delete obsolete method
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2019-05-02 gmungocJAL-3239 draw EPS or SVG one character at a time (even...
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2019-05-02 gmungocMerge branch 'bug/JAL-3244jmolWindows' into develop
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2019-05-02 gmungocJAL-3244 renamed Platform method for clarity
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2019-05-01 gmungocJAL-3244 ignore file path separator when comparing...
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2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadability...
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2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF...
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2019-04-29 gmungocJAL-3003 help page mention EPS doesn't support transparency
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2019-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
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2019-04-26 gmungocJAL-2743 class Javadoc
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2019-04-26 gmungocJAL-2738 JAL-2743 properties to map VCF header to species...
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2019-04-26 gmungocJAL-3010 borderless 'x' for "delete this filter condition"
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2019-04-26 gmungocJAL-2808 better tooltip 'delete this condition'
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2019-04-20 gmungocJAL-2791 tailored message if find fails on selection...
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2019-04-18 gmungocJAL-1793 basic help text for VCF option
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2019-04-18 gmungocJAL-3111 additional release notes
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2019-04-18 gmungocJAL-3111 small simplification of table tags, valign top
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2019-04-18 gmungocJAL-3111 release notes first pass complete
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2019-04-18 gmungocJAL-2620 updated help page to mention alternative genetic...
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2019-04-18 gmungocJAL-3193 dbSource always "ENSEMBL"
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2019-04-16 gmungocMerge branch 'bug/JAL-3218scalePanelPopups' into develop
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2019-04-15 gmungocJAL-3193 no separatge EnsemblGenomes source in SequenceFetcher
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2019-04-10 gmungocJAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org
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2019-04-10 gmungocJAL-3018 REST version updated to 10.0
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2019-04-03 gmungocJAL-3021 show Sequence Details with cursor at top
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2019-04-02 gmungocJAL-3218 allow both Hide and Reveal in scale panel...
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2019-03-29 gmungocJAL-3140 InstallAnywhere updated to intervalstore-v1...
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2019-03-29 gmungocMerge branch 'develop' of https://source.jalview.org...
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2019-03-29 gmungocJAL-3140 intervalstore now v1.0 (public release)
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2019-03-28 gmungocMerge branch 'develop' of https://source.jalview.org...
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2019-03-28 gmungocMerge branch 'develop' of https://source.jalview.org...
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2019-03-28 gmungocJAL-1889 patch for failing isControDown test on build...
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2019-03-28 gmungocMerge branch 'feature/JAL-3181linkOrdering' into develop
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2019-03-27 gmungocJAL-2620 improved error reporting on failure to load...
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2019-03-25 gmungocJAL-2717 adjusted code so default correctly returned...
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2019-03-25 gmungocJAL-3127 scripts updated for method signature change
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2019-03-23 gmungocJAL-1889 explicit recalc of geometry for scale left...
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2019-03-23 gmungocJAL-1889 remove debug logging, add updateLayout()
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2019-03-22 gmungocJAL-1889 more debug logging
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2019-03-21 gmungocJAL-1889 better debug logging
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2019-03-21 gmungocJAL-1889 temporary debug in findColumn()
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2019-03-21 gmungocJAL-1889 added belt and braces deleteOnExit() to test...
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2019-03-21 gmungocJAL-1889 correct props param, remove dasserver, output...
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2019-03-21 gmungocJAL-1889 more diagnostics for CommandLineOperations
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2019-03-21 gmungocJAL-1889 diagnostics for failing test on server
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