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JAL-2349 TODO for tests
2022-06-24 Jim ProcterJAL-2349 TODO for tests
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2022-06-24 Jim ProcterJAL-2349 JAL-3855 formatting
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2022-06-24 Jim ProcterJAL-4033 TODO re highlighting current column selection
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2022-06-24 Jim ProcterJAL-2349 debugged and simplified (a little) the scaled...
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2022-06-24 Jim ProcterJAL-3855 update EBI Alphafold barcoded URL generation...
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2022-06-24 Jim ProcterJAL-2349 JAL-3855 resolve sequence position for contact...
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2022-06-10 Jim ProcterJAL-2349 JAL-4027 JAL-3855 quick hack to add contact...
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2022-06-10 Jim ProcterJAL-4027 getter for contact matrices on the Alignment.
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2022-06-10 Jim ProcterJAL-1551 formatting
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2022-06-10 Jim ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
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2022-06-09 Jim ProcterJAL-4012 - JAL-4020 release notes and a bit of ‘troubleshoot...
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2022-06-09 Jim ProcterMerge branch 'bug/JAL-4020_add_pymolwin_paths' into...
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2022-06-09 Jim ProcterJAL-4004 add the autogenerated whatsNew.html and releases...
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2022-06-09 Jim ProcterJAL-4014 release notes for JAL-4026 patches
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2022-06-09 Jim ProcterJAL-4026 increase timeouts for command line ops
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2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if...
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2022-06-09 Jim ProcterJAL-4026 always wait 50ms before checking if the calculation...
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2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after...
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2022-06-08 Jim ProcterJAL-4014 release notes for JAL-4023 and JAL-4024
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2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees...
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2022-06-08 Jim ProcterMerge branch 'patch/JAL-4024_jumpScrollHang' into develop
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2022-06-08 Jim ProcterJAL-4012 what’s new and release notes (in the new styleee...
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2022-06-08 Jim ProcterJAL-4004 delete temporary file mistakenly checked in
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2022-06-08 Jim ProcterMerge branch 'issues/JAL-3553+JAL-3978+JAL-3989+JAL...
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2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps...
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2022-06-06 Jim ProcterJAL-4023 use %g for distances (scientific notation...
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2022-06-06 Jim ProcterJAL-4023 store distances as doubles
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2022-05-11 Jim ProcterMerge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into...
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2022-05-11 Jim ProcterJAL-4012 JAL-4008 release notes for Jalview 2.11.2.3
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2022-05-10 Jim ProcterJAL-4008 update jabaws client to 2.2.1 - definitely...
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2022-04-19 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-04-19 Jim ProcterJAL-3992 bump version and report updates in 2.11.2...
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2022-04-19 Jim ProcterMerge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into...
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2022-04-19 Jim ProcterMerge branch 'bug/JAL-3365_extendedDSSP_via_stockholm...
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2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking...
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2022-04-18 Jim ProcterMerge branch 'task/JAL-3992_update_docs' into bug/JAL...
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2022-04-18 Jim ProcterJAL-3992 fix path
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2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structure...
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2022-04-13 Jim ProcterJAL-3992 shift+arrow to jump to next gap/residue in...
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2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-04-05 Jim ProcterJAL-3990 release notes and what’s new
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2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-04-05 Jim ProcterJAL-3981 patch tests and remove errant imports
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2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply
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2022-04-05 Jim ProcterJAL-3990 release notes for 2.11.2.1 patch release
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2022-04-05 Jim ProcterMerge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_detail...
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2022-03-31 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-03-31 Jim ProcterJAL-3983 release note for JAL-3985
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2022-03-31 Jim ProcterMerge branch 'bug/JAL-3085_avoid_414_error_for_PDBFTS...
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2022-03-31 Jim ProcterJAL-3085 update tests and mock responses, new P0dtd1...
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2022-03-31 Jim ProcterJAL-3985 formatting
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2022-03-31 Jim ProcterJAL-3985 split PDB id queries into multiple queries...
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2022-03-30 Jim ProcterMerge branch 'patch/JAL-3976_3dbeaconsnull' into develop
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2022-03-30 Jim ProcterJAL-3976 fix mock PDBFTS query & responses
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2022-03-30 Jim ProcterJAL-3983 known issue note for JAL-3984
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2022-03-30 Jim ProcterJAL-3983 release notes for JAL-3975 and known issue...
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2022-03-30 Jim ProcterMerge branch 'bug/JAL-360+JAL-3975_keyboard_input_lost_after...
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2022-03-30 Jim ProcterJAL-360 JAL-3975 update parent for text colour dialog...
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2022-03-30 Jim ProcterJAL-3983 update release notes for JAL-3973
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2022-03-30 Jim ProcterJAL-3973 exclude the original RELEASE file so gradle...
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2022-03-30 Jim ProcterMerge branch 'bug/JAL-3973_source_tarball_not_building...
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2022-03-30 Jim ProcterJAL-3983 release 2.11.2.1 date and release notes
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2022-03-25 Jim ProcterJAL-3980 JAL-3979 TODOs
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2022-03-25 Jim ProcterJAL-3980 defensive copy - inefficient but fixes bug
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2022-03-25 Jim ProcterJAL-3981 Additional line breaks - sort of helps
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2022-03-24 Jim ProcterJAL-3981 strategic newlines to help speed up Java's...
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2022-03-23 Jim ProcterJAL-3976 skip entries with null values when analyzing
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2022-03-23 Jim ProcterJAL-3976 update tests
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2022-03-09 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-03-09 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-03-09 Jim ProcterJAL-3746 JAL-3841 fix README typo
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2022-03-09 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-03-09 Jim ProcterJAL-3746 more docs tweaking and release notes
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2022-03-09 Jim ProcterMerge branch 'spike/try_spotless_JAL-3438' into develop
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2022-03-08 Jim ProcterJAL-3746 apply copyright to tests
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2022-03-08 Jim ProcterJAL-3746 apply copyright to source
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2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
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2022-03-08 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-03-08 Jim ProcterJAL-3746 JAL-3841 new README and finalising 2.11.2...
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2022-03-08 Jim ProcterJAL-3108 updated Ensembl client and model species names
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2022-03-08 Jim ProcterJAL-3746 new release date for 2.11.2
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2022-03-08 Jim ProcterJAL-3746 JAL-3103 java.awt.Desktop.showURL method mechanism...
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2022-03-08 Jim ProcterMerge branch 'bug/JAL-3103_browser_launcher_problems_macos_a...
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2022-03-07 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-03-07 Jim ProcterJAL-3647 release notes for JAL-1842 JAL-3509 JAL-3881...
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2022-03-07 Jim ProcterJAL-3685 - two single quotes when replacements are...
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2022-03-04 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-03-04 Jim ProcterJAL-3647 release notes for hdpi/laf scaling JAL-3608...
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2022-03-04 Jim ProcterJAL-3746 structure mapping preference docs for JAL...
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2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
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2022-03-04 Jim ProcterJAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and...
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2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disables...
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2022-03-04 Jim ProcterJAL-3746 JAL-3814 don’t automatically launch the news...
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2022-03-04 Jim ProcterJAL-3746 JAL-3814 NONEWS property
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2022-03-04 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-03-04 Jim ProcterJAL-3608 JAL-3830 tweaked the what’s new text and updated...
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2022-03-04 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2022-03-04 Jim ProcterJAL-3608 JAL-3830 simplified command line docs a bit
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2022-03-04 Jim ProcterMerge branch 'doc/JAL-3608+JAL-3830_added_to_help_docs...
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