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2017-08-30	gmungoc	JAL-2685 tweaks to output spacing, updated TestAlignSeq...	commit \| commitdiff \| tree
2017-08-30	gmungoc	JAL-2685 use actual selection for report of pairwise...	commit \| commitdiff \| tree
2017-08-23	gmungoc	JAL-2435 last lost commit e926a5d redone	commit \| commitdiff \| tree
2017-08-10	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-08-10	gmungoc	JAL-2660 used saved value of ignoreGapsInConsensus...	commit \| commitdiff \| tree
2017-08-08	gmungoc	JAL-2560 alternative fix (reinstate lost line of code)	commit \| commitdiff \| tree
2017-08-08	gmungoc	JAL-2649 JAL-2650 wait for Conservation calc to complete...	commit \| commitdiff \| tree
2017-08-08	gmungoc	JAL-2650 configure new viewport settings before selecting...	commit \| commitdiff \| tree
2017-08-04	gmungoc	JAL-2500 JAL-2365 lightGray changed to lightgray for...	commit \| commitdiff \| tree
2017-08-04	gmungoc	JAL-2500 JAL-2365 lightGray changed to gray in example...	commit \| commitdiff \| tree
2017-08-03	gmungoc	JAL-2500 JAL-2365 feature colour "gray" _not_ "lightgray...	commit \| commitdiff \| tree
2017-08-03	gmungoc	JAL-2500 JAL-2365 lightGray changed to lightgray for...	commit \| commitdiff \| tree
2017-08-03	gmungoc	JAL-2500 JAL-2365 lightGray changed to gray in example...	commit \| commitdiff \| tree
2017-08-03	gmungoc	JAL-2435 test for 'mirror font' option visible (not...	commit \| commitdiff \| tree
2017-08-02	gmungoc	JAL-2418 corrected link url for "overview" target	commit \| commitdiff \| tree
2017-08-01	gmungoc	JAL-2611 reinstate missed merge - again!	commit \| commitdiff \| tree
2017-08-01	gmungoc	Merge branch 'feature/JAL-2611' into develop	commit \| commitdiff \| tree
2017-08-01	gmungoc	Merge branch 'bug/JAL-2630gradColourUpdateOverview...	commit \| commitdiff \| tree
2017-07-31	gmungoc	JAL-2623 updated Overview/structure on input of threshold...	commit \| commitdiff \| tree
2017-07-31	gmungoc	JAL-2622 don't vertical scroll wrapped alignment id...	commit \| commitdiff \| tree
2017-07-31	gmungoc	JAL-2631 test updated for added kd graduated feature...	commit \| commitdiff \| tree
2017-07-31	gmungoc	JAL-2623 JAL-2015 set Below Threshold on FeatureColour...	commit \| commitdiff \| tree
2017-07-31	gmungoc	JAL-2630 applet update overview on release of threshold...	commit \| commitdiff \| tree
2017-07-28	gmungoc	JAL-147 corrected status bar message for wrapped scrolled...	commit \| commitdiff \| tree
2017-07-28	gmungoc	JAL-2622 no vertical scroll of wrapped alignment from...	commit \| commitdiff \| tree
2017-07-28	gmungoc	JAL-147 unit test for no vertical move of Overview...	commit \| commitdiff \| tree
2017-07-28	gmungoc	JAL-2006 squash rounding errors at min/max threshold...	commit \| commitdiff \| tree
2017-07-28	gmungoc	JAL-2631 make minimum colour not white	commit \| commitdiff \| tree
2017-07-28	gmungoc	JAL-2630 update Overview/structure from graduated colour...	commit \| commitdiff \| tree
2017-07-28	gmungoc	JAL-2631 add graduated colour kdH features to example	commit \| commitdiff \| tree
2017-07-22	gmungoc	JAL-2624 check feature colour threshold when colouring...	commit \| commitdiff \| tree
2017-07-22	gmungoc	JAL-2623 initialise colour threshold slider correctly	commit \| commitdiff \| tree
2017-07-18	gmungoc	JAL-147 don't scroll up beyond startRes = 0	commit \| commitdiff \| tree
2017-07-18	gmungoc	JAL-147 corrected calculation of vertical scroll position...	commit \| commitdiff \| tree
2017-07-18	gmungoc	JAL-147 draw up to last position of wrapped alignment!	commit \| commitdiff \| tree
2017-07-17	gmungoc	Merge branch 'develop' into bug/JAL-147scrollWrappedView	commit \| commitdiff \| tree
2017-07-17	gmungoc	JAL-1648 JAL-2447 Spanish translations	commit \| commitdiff \| tree
2017-07-06	gmungoc	JAL-147 prevent vertical Overview box movement in wrapped...	commit \| commitdiff \| tree
2017-07-06	gmungoc	JAL-147 unit test for hide/show sequences update ViewportRanges	commit \| commitdiff \| tree
2017-07-06	gmungoc	JAL-2605 ensure correct scale width calculation	commit \| commitdiff \| tree
2017-07-05	gmungoc	JAL-147 don't update overview for column selection...	commit \| commitdiff \| tree
2017-07-05	gmungoc	JAL-147 additions to unit test, check for negative...	commit \| commitdiff \| tree
2017-07-05	gmungoc	JAL-147 prevent overview box move up over hidden first...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 revised update of startSeq, endSeq on unhide...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 unit tests added, unused setEndRes removed	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 corrected update of ViewportRanges for show...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 update ViewportRanges height after show/hide...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 remove redundant calls to update overview panel	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-2608 tidy up OverviewPanel when closed	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 call method that sets visible width when drawing...	commit \| commitdiff \| tree
2017-07-04	gmungoc	JAL-147 extract local variable for ease of debugging	commit \| commitdiff \| tree
2017-07-03	gmungoc	Merge branch 'develop' into bug/JAL-147scrollWrappedView	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 correct width out-by-one drawing ids	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 don't scroll Overview box outside panel dimensions	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 ViewportRanges calculate wrapped vertical scroll...	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-147 don't draw ScalePanel when in wrapped mode	commit \| commitdiff \| tree
2017-07-03	gmungoc	JAL-2034 don't refresh Overview for selection in id...	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2602 unit test added	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-147 don't page up above origin, repaint ids for...	commit \| commitdiff \| tree
2017-06-30	gmungoc	Merge branch 'bug/JAL-2597' into develop	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2602 pulled up identical methods to base class	commit \| commitdiff \| tree
2017-06-30	gmungoc	JAL-2602 same fix for applet	commit \| commitdiff \| tree
2017-06-29	gmungoc	JAL-147 improved wrapped scrolling (including Overview...	commit \| commitdiff \| tree
2017-06-29	gmungoc	JAL-2605 exclude left/right scale in sequence column...	commit \| commitdiff \| tree
2017-06-28	gmungoc	Merge branch 'bug/JAL-2600resizeflicker' into develop	commit \| commitdiff \| tree
2017-06-27	gmungoc	JAL-2602 check for null or empty description when copying...	commit \| commitdiff \| tree
2017-06-15	gmungoc	JAL-2563 test updated for fix	commit \| commitdiff \| tree
2017-06-15	gmungoc	Merge branch 'bug/JAL-2386groupConservationColouring...	commit \| commitdiff \| tree
2017-06-15	gmungoc	JAL-2418 typos	commit \| commitdiff \| tree
2017-06-15	gmungoc	Merge branch 'bug/JAL-2589gapColour' into develop	commit \| commitdiff \| tree
2017-06-12	gmungoc	JAL-2577 mirror select/hide by annotation in split...	commit \| commitdiff \| tree
2017-06-12	gmungoc	JAL-2577 mirror hide/select columns by annotation across...	commit \| commitdiff \| tree
2017-06-09	gmungoc	JAL-2589 render colour scheme gap colour in overview	commit \| commitdiff \| tree
2017-06-09	gmungoc	JAL-2592 distinguish "User Defined" (scheme name) from...	commit \| commitdiff \| tree
2017-06-09	gmungoc	JAL-2594 avoid stack trace creating feature on gapped...	commit \| commitdiff \| tree
2017-06-08	gmungoc	JAL-2386 JAL-2570 use ResidueShader copy constructor...	commit \| commitdiff \| tree
2017-06-07	gmungoc	JAL-2386 ensure group conservation shading is applied...	commit \| commitdiff \| tree
2017-06-06	gmungoc	JAL-2589 correct colour for Gap in Score and User Defined...	commit \| commitdiff \| tree
2017-05-31	gmungoc	JAL-2547 handle contact features 'around' a gap correctly	commit \| commitdiff \| tree
2017-05-30	gmungoc	JAL-2547 tooltip/AmendFeatures on gap straddled by...	commit \| commitdiff \| tree
2017-05-30	gmungoc	JAL-2570 don't zap group colour scheme when mapping...	commit \| commitdiff \| tree
2017-05-23	gmungoc	JAL-2547 don't show features in tooltip over a gap	commit \| commitdiff \| tree
2017-05-22	gmungoc	JAL-2504 update the right feature colour when creating...	commit \| commitdiff \| tree
2017-05-22	gmungoc	JAL-2544 unit tests for sort by feature score	commit \| commitdiff \| tree
2017-05-22	gmungoc	JAL-2544 check feature overlaps selection region	commit \| commitdiff \| tree
2017-05-19	gmungoc	JAL-2526 removed redundant call to Sequence.findPosition()	commit \| commitdiff \| tree
2017-05-17	gmungoc	JAL-2504 use (and update) defaults for new feature...	commit \| commitdiff \| tree
2017-05-17	gmungoc	Merge branch 'develop' into bug/JAL-2510amendFeatures	commit \| commitdiff \| tree
2017-05-16	gmungoc	JAL-2517 restore complex colour scheme on Cancel in...	commit \| commitdiff \| tree
2017-05-16	gmungoc	JAL-2403 simplify instantiation / configuration of...	commit \| commitdiff \| tree
2017-05-15	gmungoc	JAL-2532 new feature types and colour changes from...	commit \| commitdiff \| tree
2017-05-09	gmungoc	JAL-1632 correct i18n and NPE	commit \| commitdiff \| tree
2017-05-08	gmungoc	JAL-1933 Spanish tooltips for annotation	commit \| commitdiff \| tree
2017-05-08	gmungoc	JAL-1632 i18n for warning messages	commit \| commitdiff \| tree
2017-05-08	gmungoc	Merge remote-tracking branch 'origin/bug/JAL-2515'...	commit \| commitdiff \| tree
2017-05-05	gmungoc	Merge branch 'develop' into features/JAL-2435splitScreenFont	commit \| commitdiff \| tree
2017-05-05	gmungoc	JAL-964 JAL-2510 update Feature Settings from Amend...	commit \| commitdiff \| tree
2017-05-04	gmungoc	JAL-2506 allow graduated colour as default in new Sequence...	commit \| commitdiff \| tree
2017-05-04	gmungoc	JAL-2510 ensure modified feature type is displayed	commit \| commitdiff \| tree
2017-05-04	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
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