| 2017-05-04 |
gmungoc | JAL-2506 allow graduated colour as default in new Sequence...
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2510 ensure modified feature type is displayed
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2504 allow feature type to be specified for Create...
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2246 basic sanity test of fetching example accessions
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2246 test a Uniprot fetch
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2105 Ensembl REST now at 5.0
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2485 JAL-2246 test Uniprot FTS summary
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-1933 Spanish for Occupancy
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-2499 inlined two 1-line methods
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside...
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-05-01 |
gmungoc | JAL-2489 JAL-2371 reinstate calls to
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commit | commitdiff | tree |
| 2017-05-01 |
gmungoc | Merge remote-tracking branch
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commit | commitdiff | tree |
| 2017-04-28 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-24 |
gmungoc | JAL-2487 remove redundant refreshGUI to minimise threading...
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commit | commitdiff | tree |
| 2017-04-24 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-24 |
gmungoc | JAL-2424 final contig now an inclusive range
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2295 Spanish translations for superposition / errors
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2295 Spanish translations added
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2361 Spanish text added
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2423 tweak tree panel title, add Spanish text
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2361 tweak layout of warning message
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-1632 removed check for aligned sequences for Tree...
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-1632 remove unused check for sequences aligned
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2403 ensure array held in Matrix is immutable
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2403 public static methods to convert distance...
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-1632 one PCA/Tree per panel, closed when panel...
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2403 improved ScoreModelI hierarchy as per Kira...
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2428 Javadoc
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2403 unit tests for PCA.computeSimilarity, signature...
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2403 removed remaining jvCalcMode references from PCA
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2416 test updated for reinstatement of '*' row...
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2361 option to save on OK of changed named colour...
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commit | commitdiff | tree |
| 2017-04-09 |
gmungoc | JAL-2393 remove unused commented code
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commit | commitdiff | tree |
| 2017-04-07 |
gmungoc | JAL-2393 code tidying for review comments
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commit | commitdiff | tree |
| 2017-04-07 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-06 |
gmungoc | JAL-2361 make a modified saved scheme the backout checkpoint...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2384 JAL-2371 update ResidueShader on change of...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2361 simplify constructors, select unsaved but...
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commit | commitdiff | tree |
| 2017-04-05 |
gmungoc | JAL-2361 apply any saved changes to current colour...
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | JAL-2314 made non-test method non-public
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | Merge branch 'develop' into bug/JAL-2314
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commit | commitdiff | tree |
| 2017-04-03 |
gmungoc | Merge branch 'develop' into bug/JAL-2461
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2405 additional checks for circular reference in...
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2472 PrivilegedAccessor added
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | Merge branch 'develop' into bug/JAL-2431splitFrameNewView
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commit | commitdiff | tree |
| 2017-03-31 |
gmungoc | JAL-2430 code tidy, unit test for Jmol hidden column...
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-1608 leave Create Group, Remove Group menu items...
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2401 code and help tidy for review comments
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2401 don't apply lower case colour to upper case
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2399textColour
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 JAL-1933 test updated to include Occupancy
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 always run setup!
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | JAL-2346 more test coverage for AnnotationColourGradient
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commit | commitdiff | tree |
| 2017-03-30 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice
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commit | commitdiff | tree |
| 2017-03-29 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups
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commit | commitdiff | tree |
| 2017-03-29 |
gmungoc | JAL-2416 JAL-728 reduced dependency on Blosum62 implementati...
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commit | commitdiff | tree |
| 2017-03-29 |
gmungoc | JAL-2416 revert to '*' not '-' in score matrix, handle...
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commit | commitdiff | tree |
| 2017-03-29 |
gmungoc | JAL-2416 explicit constant for unknown/unknown identity...
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commit | commitdiff | tree |
| 2017-03-28 |
gmungoc | JAL-2416 format matrix more readably
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commit | commitdiff | tree |
| 2017-03-28 |
gmungoc | JAL-2403 JAL-2416 pairwise score unexpected symbols...
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commit | commitdiff | tree |
| 2017-03-28 |
gmungoc | JAL-2416 JAL-2403 remove unused '*' row/column from...
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commit | commitdiff | tree |
| 2017-03-28 |
gmungoc | JAL-2403 further test coverage for ScoreMatrix, min...
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commit | commitdiff | tree |
| 2017-03-28 |
gmungoc | JAL-2416 more test coverage of matrix parser
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 parse score matrices in either NCBI or AAindex...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 amended to AAindex format
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 amended to (as near as possible) strict NCBI...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 class Javadoc updates prior to parsing changes
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2468 change score model in PCAModel when switching
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 tidy up after switch from ' ' to '-' in score...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 score matrix gap symbol (if any) dynamically...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 tooltip with descriptions for score models...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 add score model description field for tooltip...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2403 SWDistanceModel now SmithWatermanModel - a...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2416 use '-' not space for gap in score matrices
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2428 unused method deleted
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2403 PIDDistanceModel deleted as superseded by...
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commit | commitdiff | tree |
| 2017-03-27 |
gmungoc | JAL-2428 pass AlignmentView to TreeModel so Show Input...
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-2428 simplify TreeModel constructors, add getOriginalData
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-2428 use 'correct' name for selected score model
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-1632 TreeChooser renamed CalculationChooser, text...
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-1632 named parameters
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-2398 corrected BLOSUM62 C -> R score in resource...
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-2416 tests added for ScoreMatrix
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-2464 fix cancel tree print behaviour
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commit | commitdiff | tree |
| 2017-03-24 |
gmungoc | JAL-838 move two callers off Comparison.PID and deprecate it
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commit | commitdiff | tree |
| 2017-03-23 |
gmungoc | JAL-2397 scale PCA by PID to alignment width to match...
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commit | commitdiff | tree |
| 2017-03-23 |
gmungoc | JAL-2397 formatting only
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commit | commitdiff | tree |
| 2017-03-23 |
gmungoc | JAL-1632 suppress PID parameter options in Tree/PCA...
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commit | commitdiff | tree |
| 2017-03-23 |
gmungoc | JAL-838 class javadoc added
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commit | commitdiff | tree |
| 2017-03-23 |
gmungoc | JAL-2464 fix cancel tree print behaviour
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commit | commitdiff | tree |
| 2017-03-23 |
gmungoc | JAL-2393 code tidy and comments, PIDDistanceModel deprecated
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commit | commitdiff | tree |
| 2017-03-23 |
gmungoc | JAL-2393 updated test for removal of PIDDistanceModel
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commit | commitdiff | tree |
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