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JAL-2233 reverted changes to Jmol logging levels
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels
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2016-10-05 gmungocJAL-1191 revert to using SequenceOntologyLite due to...
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2016-10-05 gmungocJAL-1191 configure full SO for desktop, SOLite for...
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2016-10-05 gmungocJAL-2245 defence against NullPointer if no EMBL data...
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2016-10-05 gmungocJAL-1191 use full SO in desktop application
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2016-10-05 gmungocJAL-2105 update Ensembl REST version to 4.7
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2016-10-05 gmungocJAL-1191 refined warning message
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2016-10-05 gmungocJAL-1191 added mRNA isA transcript to SequenceOntologyLite...
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2016-10-04 gmungocMerge branch 'bug/JAL-2245enaXmlChange' into develop
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2016-10-04 gmungocMerge branch 'bug/JAL-2210_hack_for_Release_2_10' into...
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2016-10-04 gmungocJAL-2245 Castor mapping and code changes for change...
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2016-10-04 gmungocJAL-2232 some fix / partial fix of failing tests
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2016-10-04 gmungocJAL-2232 added test that failed before last fix, passes...
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2016-10-04 gmungocJAL-2232 JAL-2154 update dbrefs to newly created dataset...
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2016-10-03 gmungocJAL-2110 javadoc formatting only
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2016-10-03 gmungocJAL-2110 JAL-1705 handle not found (400) better
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2016-10-03 gmungocJAL-2110 additional tests for setDatasetSequence, javadoc...
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2016-09-30 gmungocJAL-2236 code restored (and some compiler warnings...
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2016-09-30 gmungocMerge branch 'develop' into features/JAL-1856dbRefFetcherMes...
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2016-09-30 gmungocJAL-2234 FER1_ARATH renamed FER2_ARATH and vice versa
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2016-09-30 gmungocJAL-2236 fixes for desktop and applet implementation...
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2016-09-29 gmungocJAL-1856 better warning messages for sequence matching...
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2016-09-29 gmungocJAL-2213 code warnings addressed (typed collections...
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2016-09-29 gmungocJAL-2213 removed PDB from db sources list; also code...
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2016-09-29 gmungocJAL-2213 made RESNUM constant private (not used elsewhere...
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2016-09-29 gmungocJAL-2213 corrected wait for files to load in Jmol;...
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2016-09-29 gmungocJAL-2237 apply default filter as sort in initial search
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2016-09-29 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-09-29 gmungocJAL-2047 allow title to be shrunk; spelling fix
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2016-09-29 gmungocJAL-1544 typo
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2016-09-29 gmungocJAL-1903 increase REST reply timeout from 5 to 15 seconds
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2016-09-27 gmungocJAL-2233 less verbose logging for Jmol
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2016-09-27 gmungocJAL-2231 save preferred scroll height _without_ progress...
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2016-09-27 gmungocJAL-2230 JAL-2049 added sequence feature transfer to
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2016-09-27 gmungocJAL-2230 use correct mapping to transfer features to...
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2016-09-23 gmungocJAL-2214 Javadoc
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2016-09-22 gmungocJAL-1421 use declared type of ResidueProperties.propHash
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2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176...
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2016-09-22 gmungocJAL-2216 null currentAlignFrame on close all windows...
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2016-09-22 gmungocJAL-2216 finalize call super.finalize()
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2016-09-22 gmungocJAL-2216 finalise corrected to finalize
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2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and AnnotationRende...
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2016-09-22 gmungocJAL-2216 finalize() refactored so not called programmatically
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2016-09-22 gmungocJAL-2216 new dispose() method to null references
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2016-09-22 gmungocJAL-2216 finalize call super.finalize()
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2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not...
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2016-09-19 gmungocJAL-2118 reorder annotations after add/delete/hide...
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2016-09-19 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
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2016-09-19 gmungocJAL-1353 small tidy of test
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2016-09-19 gmungocJAL-1270 use test properties file
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2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
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2016-09-16 gmungocJAL-2183 don't open two free text panels; give input...
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2016-09-16 gmungocJAL-2183 avoid duplicate closeDialog()
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2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser...
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2016-09-16 gmungocJAL-1270 JAL-1919 ensure Temp Factor is OFF for test...
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2016-09-13 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-09-13 gmungocJAL-1803 tests added for PDBEntry.Type
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2016-09-13 gmungocJAL-1803 extracted class ChainId to jalview.util.CaseInsensi...
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2016-09-13 gmungocJAL-2119 use File.separator not "/"
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2016-09-12 gmungocJAL-2119 case-sensitive href filename checking
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2016-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-09-07 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-09-07 gmungocJAL-2164 fix failing test
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2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandidate()
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2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSequenc...
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2016-09-05 gmungocJAL-2154 made Java 7 compatible
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2016-09-05 gmungocJAL-2106 increased coverage for testGetPrimaryDbRefs
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2016-09-05 gmungocJAL-2106 corrections to DBRefEntry.isPrimary code and...
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2016-09-02 gmungocJAL-1854 distinct messages for TODO/FIXME and DOCUMENT ME
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2016-09-01 gmungocJAL-2077 don't mess with the look and feel
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2016-09-01 gmungocJAL-2077 less drastic exit on close
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2016-09-01 gmungocJAL-2077 test harness for inspecting mouse events
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2016-09-01 gmungocJAL-2077 check isPopupTrigger in mouseReleased not...
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2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive...
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2016-09-01 gmungocJAL-1854 rule to disallow import of swing in appletgui
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2016-09-01 gmungocJAL-2077 do nothing in mousePressed if right button...
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2016-09-01 gmungocJAL-2077 force defer right-click handling to mouseReleased...
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2016-08-31 gmungocJAL-2077 test isPopupTrigger in mouseReleased or mouseClicke...
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2016-08-31 gmungocJAL-2077 more javadoc
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2016-08-31 gmungocMerge branch 'develop' of https://source.jalview.org...
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2016-08-31 gmungocJAL-2077 check for isPopupTrigger() in mousePressed...
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2016-08-31 gmungocJAL-1670 repositioned feature for backwards compatibility...
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2016-08-30 gmungocJAL-2183 defensive check for openFrameCount < 0 (shouldn...
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2016-08-30 gmungocJAL-2183 simplified database tree actionPerformed,...
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2016-08-30 gmungocJAL-2183 revised change (= no change)
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2016-08-30 gmungocJAL-2183 formatter added @Override (only)
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2016-08-30 gmungocJAL-2183 removed redundant (overriden) add panel to...
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2016-08-29 gmungocJAL-1854 tweaks to rules and README
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2016-08-29 gmungocJAL-1854 checkstyle relocated to /utils, newlines to...
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2016-08-29 gmungocMerge branch 'bug/JAL-1841rnaSecStr' into develop
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2016-08-29 gmungocJAL-1448 updated unit test for last change
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2016-08-29 gmungocJAL-1841 robustness fix
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2016-08-29 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-26 gmungocJAL-1854 two more rules, readme notes
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2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-26 gmungocJAL-1854 commented FallThrough rule
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2016-08-26 gmungocJAL-1854 corrected nested package rule
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2016-08-26 gmungocJAL-2049 set Ensembl variant source to ENSEMBL if ...
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2016-08-26 gmungocJAL-1854 comment switch case fallthrough
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