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JAL-2909 Bam file parsing with insertions, first pass
2018-02-26 kiramtJAL-2909 Bam file parsing with insertions, first pass
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2018-02-26 kiramtJAL-2909 Changes to htsjdk import control
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2018-02-26 kiramtJAL-2909 Cigar parsing tests
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2018-02-21 kiramtJAL-2909 Partial insertions
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2018-02-20 kiramtJAL-2909 Modified classpath
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2018-02-20 kiramtJAL-2909 Insertions almost
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2018-02-19 kiramtJAL-2909 Read in a bam file - but strand/location unaware
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2018-02-19 kiramtJAL-2909 Removed buggy CIGAR parsing code which was...
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2018-01-12 kiramtJAL-2886 trivial unit test fix
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2018-01-11 kiramtMerge remote-tracking branch 'origin/task/JAL-2662...
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2018-01-11 kiramtJAL-2662 Updated README
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2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851
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2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling
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2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837
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2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837
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2017-11-16 kiramtJAL-2831 Removed unwanted hidden sequences checks
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2017-11-16 kiramtJAL-2842 remove infinite loop in cursor move
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2017-11-15 kiramtJAL-2831 Don't show cursor if position in hidden region
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2017-11-15 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831
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2017-11-15 kiramtJAL-2811 Updated following review
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2017-11-15 kiramtJAL-2840 fix wrapped scrolling when using cursor at...
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2017-11-15 kiramtJAL-2834 JAL-2836 temporarily disabled wrapped mode...
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2017-11-15 kiramtJAL-2831 ported to applet
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2017-11-14 kiramtJAL-2831 tidies and tests
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2017-11-14 kiramtJAL-2831 tidy
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2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831
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2017-11-14 kiramtJAL-2811 Changed to overlay on via graphics context...
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2017-11-14 kiramtJAL-2811 Missed commit
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2017-11-14 kiramtJAL-2811 Made it work for hidden columns/seqs too
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2017-11-14 kiramtJAL-2831 Attempt at cursor fix for wrapped mode
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2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831
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2017-11-14 kiramtJAL-2831 deal with hidden cols and seqs in new cursor...
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2017-11-14 kiramtJAL-2831 Added move viewport event and set up cursor...
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2017-11-14 kiramtMerge branch 'imp/JAL-2774' into bug/JAL-2831
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2017-11-13 kiramtJAL-2811 Tidy
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2017-11-13 kiramtJAl-2811 Working for wrapped panels too
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2017-11-13 kiramtJAL-2811 Add layer for cursor in SeqCanvas
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2017-11-13 kiramtJAL-2784 new checks for gg==null
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2017-11-10 kiramtJAL-2827 related fixes for stem and non-canonical annotation
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2017-11-09 kiramtJAL-2827 Fix notched repaint of helix annotation when...
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2017-11-07 kiramtJAL-2774 Added javadoc for new event parameters
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2017-11-07 kiramtJAL-2774 Fix fastpaint of wrapped alignment
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2017-11-07 kiramtJAL-2821 refactored drawPartialGroupOutline
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2017-11-01 kiramtMerge branch 'develop' into imp/JAL-2775
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2017-10-31 kiramtJAL-2774 Fix repaint artefacts
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2017-10-31 kiramtJAL-2774 Fixed merge issues
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2017-10-31 kiramtMerge remote-tracking branch 'origin/develop' into...
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2017-10-31 kiramtJAL-2756 update for new EBI https link
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2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge
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2017-10-16 kiramtJAL-2775 added repaint clipping
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2017-10-13 kiramtJAL-2774 Created single event for update to both start...
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2017-10-11 kiramtJAL-2742 test updates following review
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2017-10-11 kiramtJAL-2742 minor test updates following review
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2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars
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2017-10-11 kiramtJAL-2609attemptedmerge tidy
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2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609fastPa...
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2017-10-10 kiramtJAL-2690attemptedmerge seems to work
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2017-10-10 kiramtJAL-2690attemptedmerge partial merge
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2017-09-26 kiramtJAL-2742 uncomment test
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2017-09-26 kiramtJAL-2742 fixed
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2017-09-26 kiramtJAL-2742 CigarArray constructor unit test
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2017-09-26 kiramtJAL-2740 additional unit testing
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2017-09-26 kiramtJAL-2740 removed unwanted code, added unit test
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2017-09-22 kiramtJAL-2739 Fix ported to 2.10.3
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2017-09-20 kiramtJAL-2662 Adjustments to hidden columns benchmark
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2017-09-19 kiramtJAL-2662 Updated README
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2017-09-19 kiramtJAL-2737 Checkstyle error fixes
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2017-09-19 kiramtJAL-2622 Tidied up gitignore, added to README
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2017-09-19 kiramtMerge branch 'develop' of https://source.jalview.org...
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2017-09-19 kiramtMerge remote-tracking branch 'origin/task/JAL-2662...
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2017-09-06 kiramtJAL-2587 Removed dissolve
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2017-09-05 kiramtJAL-2722 unit test
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2017-09-05 kiramtJAL-2722 Reinstate allGroups value setting in getResidueColour
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2017-09-04 kiramtJAL-2673 turn off update to running flag from scrollUp...
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2017-09-04 kiramtJAL-2673 Attempt to stop infinite scrolling etc
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2017-09-04 kiramtJAL-2611 reinstated missed commit
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2017-09-01 kiramtJAL-2527 Additional test
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2017-09-01 kiramtJAL-2527 Unit test for group colouring
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2017-08-31 kiramtJAL-2527 Unit test
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2017-08-31 kiramtJAL-2527 Fix typo
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2017-08-31 kiramtJAL-2527 Updated Spanish, adjusted UI so Spanish fits
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2017-08-31 kiramtJAL-2527 Updates following code review
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2017-08-30 kiramtJAL-2527 Code comments, tidy
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2017-08-30 kiramtJAL-2527 Added default setting/resetting and first...
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2017-08-30 kiramtJAL-2527 Wired up cached values to overview
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2017-08-30 kiramtMerge remote-tracking branch 'origin/feature/2588'...
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2017-08-30 kiramtMerge branch 'feature/JAL-2664' into feature/JAL-2527
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2017-08-30 kiramtJAL-2587 Removed dissolve
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2017-08-29 kiramtJAL-2664 Updates following review
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2017-08-29 kiramtJAL-2527 Added overview prefs - don't get picked up...
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2017-08-29 kiramtJAL-2665 OOM checks just in case
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2017-08-29 kiramtJAL-2665 OOM checks just in case
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2017-08-29 kiramtJAL-2665 OOM check
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2017-08-29 kiramtJAL-2665 ported fix to 2.10.3. Doesn't work.
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2017-08-29 kiramtJAL-2665 Corrected to draw selections for wrapped printing
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2017-08-28 kiramtJAL-2527 Started adding overview preferences
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2017-08-28 kiramtMerge remote-tracking branch 'origin/develop' into...
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2017-08-28 kiramtMerge remote-tracking branch 'origin/releases/Release_2_10_2...
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2017-08-28 kiramtJAL-2665 Changes for review comments; printing with...
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2017-08-25 kiramtJAL-2587 Removed duplicate events fired to progress bar
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