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JAL-2897 generate peptide variants for synonymous codon variants
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon...
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2018-01-30 gmungocJAL-2897 formatting change only prior to functional...
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2018-01-29 gmungocJAL-2743 recoded EnsemblLookup without lambda expressions...
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2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2018-01-18 gmungocJAL-2810 JAL-2886 i18n
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2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved...
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2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retrieved...
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2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Parent...
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2018-01-10 gmungocJAL-2791 ignore feature type visibility in getColor()
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2018-01-09 gmungocJAL-2843 test roundtrip of feature colours and filters...
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2018-01-09 gmungocJAL-2843 unit tests for writing filters to Jalview...
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2018-01-09 gmungocJAL-2843 unit tests for Save/Load colours and filters...
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2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc
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2018-01-08 gmungocJAL-2069 fix setting initial value of slider from threshold
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2017-12-14 gmungocJAL-2843 missed Castor class
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2017-12-14 gmungocJAL-2843 save/restore colour feature by attribute,...
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2017-12-14 gmungocJAL-2879 save/restore feature sub-attributes in Jalview...
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2017-12-14 gmungocJAL-2843 missed Castor class
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2017-12-14 gmungocJAL-2843 and Castor metadata file for latest changes
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2017-12-14 gmungocJAL-2843 schema and code changes to save colour by...
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2017-12-13 gmungocJAL-2843 add isByAttribute to interface for convenience
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2017-12-11 gmungocJAL-2843 add colour by attribute, and no value colour...
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2017-12-08 gmungocJAL-2843 example filters added
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2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview...
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2017-12-08 gmungocJAL-2843 refactor / tidy for feature filter input/output
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2017-12-08 gmungocJAL-2843 methods relocated
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2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview features...
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2017-12-08 gmungocJAL-2843 FeatureRenderer.getFeatureFilters returns...
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2017-12-05 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF
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2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence referenced...
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2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement...
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2017-12-04 gmungocJAL-2835 small refactor to only extract transcript...
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2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term...
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2017-12-01 gmungocJAL-2835 refactored to extract specific consequence...
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2017-12-01 gmungocJAL-2792 sort feature attributes for output, not for...
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2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added
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2017-11-30 gmungocJAL-2850 improved use of htsjdk api to read contig...
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2017-11-30 gmungocJAL-1766 additional tests for stub htsjdk wrapper
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2017-11-28 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-28 gmungocJAL-2850 MapList.isToForwardStrand added
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2017-11-27 gmungocJAL-2850 VCFLoader refactored to load VCF to contig...
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2017-11-24 gmungocJAL-2808 update spike to latest
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2017-11-24 gmungocJAL-2808 refactoring to better handler filter by Score...
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2017-11-24 gmungocJAL-2808 relocate constants for compiler, add COLUMN_COUNT...
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2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher...
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2017-11-24 gmungocJAL-2808 don't cache i18n - MessageManager already...
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2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip...
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2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with...
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2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present...
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2017-11-23 gmungocJAL-2808 removed field filters; sort CSQ data by key
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2017-11-23 gmungocJAL-2808 added conditions Present, NotPresent as options
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2017-11-23 gmungocJAL-2808 refactor conversion of table data to beans...
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2017-11-23 gmungocJAL-2808 pass FeatureSettings to controller as array...
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2017-11-22 gmungocJAL-2808 update conditions list on change of attribute...
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2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings)
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2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-22 gmungocJAL-2808 JAL-2069 FeatureTypeSettings (with new Filters...
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2017-11-22 gmungocJAL-2069 renamed helper method better
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2017-11-22 gmungocJAL-2808 defer dispose to allow screen location to...
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2017-11-22 gmungocJAL-2069 Javadoc added only
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2017-11-22 gmungocJAL-1424 enhanced to report dynamic keys separately
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2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character...
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2017-11-17 gmungocJAL-2808 set (read-only) condition text field as disabled
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2017-11-16 gmungocJAL-2069 fix minor bugs in variable setting
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2017-11-16 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-16 gmungocJAL-2069 removed unused and redundant thresholdIsMinMax
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2017-11-16 gmungocJAL-2816 JAL-2835 additional tests to include colour...
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2017-11-16 gmungocJAL-2835 update test for array-valued attribute name
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2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map
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2017-11-16 gmungocJAL-2835 test updated for colour by 'nested attribute'
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2017-11-16 gmungocJAL-2816 tests for findFeaturesAtColumn
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2017-11-15 gmungocJAL-2816 exclude filtered / thresholded out features...
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2017-11-15 gmungocJAL-2835 spike updated with latest
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2017-11-15 gmungocJAL-2835 take all CSQ fields; catch invalid field match...
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2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute...
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2017-11-15 gmungocJAL-2835 code tidy (generic type constructors)
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2017-11-15 gmungocJAL-2069 dialog title now 'Variable colour'
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2017-11-15 gmungocJAL- 2835 support filter on nested attribute keys
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2017-11-15 gmungocJAL-2835 add filters for VCF/VEP 'fields of interest'
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2017-11-15 gmungocJAL-1270 add missing "Functional" to tests
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2017-11-14 gmungocJAL-2754 corrected merge conflict
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2017-11-13 gmungocJAL-2738 stubs for filtering VEP and VCF fields of...
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2017-11-13 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-13 gmungocJAL-2662 tweak README, format code
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2017-11-13 gmungocJAL-2176 removed unused Sequence.index
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2017-11-13 gmungocJAL-2679 example accession changed to CAD01290
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2017-11-10 gmungocJAL-2829 fixes and unit tests
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2017-11-10 gmungocJAL-2562 updated findPosition javadoc to match behaviour
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2017-11-10 gmungocJAL-2829 unit tests for failing cases
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2017-11-10 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-08 gmungocJAL-2808 i18n, widget state settings
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2017-11-08 gmungocJAL-2069 updated spike to latest
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2017-11-08 gmungocJAL-2069 ensure threshline instantiated to avoid NPE
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2017-11-08 gmungocJAL-2069 (helper method for) italic titled borders
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2017-11-07 gmungocJAL-2069 update spike to latest (no value colour options)
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2017-11-07 gmungocJAL-2069 choice of no / min / max colour if 'no attribute...
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2017-11-07 gmungocJAL-2069 update spike with latest
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2017-11-07 gmungocJAL-2069 corrected overloaded constructor behaviour
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2017-11-07 gmungocJAL-2069 update spike branch with latest
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