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JAL-3794 X and N are counted as DNA characters, but we also check how many Ns - if...
2020-10-29 Ben SoaresJAL-3248 Fixed path typos in building.md/html and corrected...
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2020-10-28 Ben SoaresJAL-3248 Added step to create the eclipse files before...
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2020-10-15 Ben SoaresJAL-3611 added quotation marks for appdir argument...
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2020-09-25 Ben SoaresJAL-3577 Removed default JALVIEW_VERSION from gradle...
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2020-09-24 Ben SoaresJAL-3577 Quick fix adding quotation marks for findProperty...
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2020-09-23 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding checks...
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2020-09-23 Ben SoaresJAL-3633 ensure check both http:// or https:// for...
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2020-09-15 Ben SoaresJAL-3718 Fixed getdown auto-update. This commit Getdown...
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2020-09-15 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when...
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2020-09-02 Ben SoaresJAL-3280 Test for remote release build_properties file...
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2020-09-01 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking...
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2020-08-31 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew...
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2020-08-28 Ben SoaresJAL-3676 adding Axis and Castor loggging properties...
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2020-08-27 Ben SoaresJAL-3676 Documentation in Help for Java Console, Logging...
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2020-08-27 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into...
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2020-08-18 Ben SoaresJAL-3718 Added digestonly key to getdown.txt to copy...
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2020-08-18 Ben SoaresJAL-3676 Start of documentation in help pages logging...
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2020-08-14 Ben SoaresJAL-3676 More explicit tooltip about resetting log...
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2020-08-13 Ben SoaresJAL-3597 Increased heap passmark to <= 45MB and report...
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2020-08-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for...
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2020-08-12 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
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2020-08-05 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to...
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2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description...
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2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
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2020-08-04 Ben SoaresJAL-3477 added help documentation for executable jar...
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2020-07-31 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into...
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2020-07-08 Ben SoaresMerge branch 'bug/JAL-3541_cherry_pick_to_releases_Release_2...
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2020-07-08 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into...
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2020-07-08 Ben SoaresMerge branch 'task/JAL-3609_HiDPI_support_in_java'...
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2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
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2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug
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2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error
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2020-07-07 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...
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2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error
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2020-07-07 Ben SoaresJAL-3541 ensure deletion of cloverReportDir
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2020-07-07 Ben SoaresJAL-3541 small fix for clover.xml location expected...
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2020-07-07 Ben SoaresJAL-3541 Fixed report path for build artifacts
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2020-07-07 Ben SoaresJAL-3541 Added mem setting and jvmArgs for cloverReporting
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2020-07-07 Ben SoaresJAL-3541 Individual tests now instrumented and reported...
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2020-07-07 Ben SoaresJAL-3541 Helpers for running tests, and other commands...
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2020-07-07 Ben SoaresJAL-3541 JavaExec tasks for cloverInstr and cloverReport...
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2020-07-07 Ben SoaresJAL-3541 increase maxheapsize for test worker process
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2020-07-07 Ben SoaresJAL-3541 tidying build.gradle, delete cloverInstrDir...
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2020-07-07 Ben SoaresJAL-3541 perhaps a better clean for clover. fixed
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2020-07-07 Ben SoaresJAL-3541 perhaps a better clean for clover
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2020-07-07 Ben SoaresJAL-3541 rejigged clover tasks very mildly
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2020-07-07 Ben SoaresJAL-3685 Fixed single quotes in formatMessage messages
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2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error...
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2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...
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2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...
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2020-07-06 Ben SoaresJAL-3676 improvement for visual selection of console...
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2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...
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2020-07-06 Ben SoaresJAL-3628 improvement for visual selection of console...
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2020-07-06 Ben SoaresJAL-3628 Fix for slightly incorrect boolean usage to...
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2020-07-06 Ben SoaresJAL-3628 Even more Cache.log.debug statements
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2020-07-04 Ben SoaresJAL-3628 More Cache.log.debug statements
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2020-07-02 Ben SoaresJAL-3676 code review -- added non-listed Level into...
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2020-07-01 Ben SoaresJAL-3609 Allow pass-through of setHiDPIScale property...
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2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_from_...
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2020-06-30 Ben SoaresJAL-3676 Added Log Level ComboBox and Copy to Clipboard...
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2020-06-24 Ben SoaresJAL-3667 Fixed single backupfile error deleting the...
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2020-06-21 Ben SoaresJAL-3609 Report when scale setting used.
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2020-06-21 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI....
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2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick
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2020-06-16 Ben SoaresJAL-3608 formatting save only
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2020-06-16 Ben SoaresJAL-3608 formatting save only
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2020-06-15 Ben SoaresJAL-3628 Changed other calls to renameTo to use BackupFiles...
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2020-06-08 Ben SoaresJAL-3628 Changed all file1.renameTo(file2) calls to...
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2020-05-20 Ben SoaresJAL-3609 removed debugging prints
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2020-05-19 Ben SoaresJAL-3609 changed property names to something more palatable...
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2020-05-19 Ben SoaresJAL-3609 system properties to force a scale, or automaticall...
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2020-05-19 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly...
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2020-05-15 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in...
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2020-04-21 Ben SoaresJAL-3577 changed default RELEASE dir in build.gradle...
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2020-04-21 Ben SoaresJAL-3577 Added newer install dirs to the deletion list...
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2020-04-09 Ben SoaresJAL-3588 Remove Examples folder in windows Program...
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2020-04-07 Ben SoaresJAL-3577 improvement to non-release DMG background...
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2020-04-07 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers...
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2020-04-07 Ben SoaresJAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEASE...
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2020-04-06 Ben SoaresJAL-3577 Fixed Jalview Programme Group in Windows menu...
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2020-04-06 Ben SoaresJAL-3577 Moved application Categories for freedesktop...
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2020-04-06 Ben SoaresJAL-3577 removed debugging
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2020-04-06 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers...
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2020-04-06 Ben SoaresJAL-3577 Added existing and new Application IDs for...
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2020-04-06 Ben SoaresJAL-3577 Changed shortName to INTERNAL_ID
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2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value...
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2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value...
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2020-04-04 Ben SoaresJAL-3577 Added DS_Store for Test release to look like...
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2020-04-03 Ben SoaresJAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE...
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2020-04-03 Ben SoaresJAL-3577 cleaned up old DMG files. Added NON-RELEASE...
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2020-04-02 Ben SoaresJAL-3577 First attempt at new folder names
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2020-04-02 Ben SoaresJAL-3572 Added getdown Implementation-Version to getdown...
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2020-04-02 Ben SoaresMerge branch 'improvement/JAL-3394_added_categories_to_unix_...
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2020-03-26 Ben SoaresJAL-3225 Also look for local.properties in file named...
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2020-03-26 Ben SoaresJAL-3225 All of .settings now gitignored. org.eclipse...
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2020-03-25 Ben SoaresJAL-3248 Added instructions for downloading and configuring...
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2020-03-19 Ben SoaresJAL-3541 increase maxheapsize for test worker process
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2020-03-19 Ben SoaresJAL-3541 tidying build.gradle, delete cloverInstrDir...
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2020-03-19 Ben SoaresJAL-3541 put org.gradle.jvmargs explicitly into gradle...
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2020-03-18 Ben SoaresJAL-3541 merged cleanClover with develop
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