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jalview.git
2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement... commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2835 small refactor to only extract transcript... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 update spike to latest commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip... commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present... commit | commitdiff | tree | snapshot
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) commit | commitdiff | tree | snapshot
2017-11-15 gmungocJAL-2835 spike updated with latest commit | commitdiff | tree | snapshot
2017-11-08 gmungocJAL-2069 updated spike to latest commit | commitdiff | tree | snapshot
2017-11-07 gmungocJAL-2069 update spike to latest (no value colour options) commit | commitdiff | tree | snapshot
2017-11-07 gmungocJAL-2069 update spike with latest commit | commitdiff | tree | snapshot
2017-11-07 gmungocJAL-2069 update spike branch with latest commit | commitdiff | tree | snapshot
2017-11-02 gmungocJAL-2808 spike updated with latest commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-2754 rename proguard.jar on spike branch commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-2754 spike branch updated to latest commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-2754 5.3.3 update of proguard.jar commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2738 update spike branch with latest commit | commitdiff | tree | snapshot
2017-10-20 gmungocPush 1793 latest to spike branch commit | commitdiff | tree | snapshot
2017-10-05 gmungocJAL-2738 update spikes/mungo commit | commitdiff | tree | snapshot
2017-10-04 gmungocMerge branch 'features/JAL-1793VCF' into spikes/mungo commit | commitdiff | tree | snapshot
2017-10-04 gmungocJAL-2738 fix bug of premature exit from adding attributes commit | commitdiff | tree | snapshot
2017-10-04 gmungocJAL-2738 match consequence "Allele" to VCF allele;... commit | commitdiff | tree | snapshot
2017-10-04 gmungocJAL-2744 handle null features list commit | commitdiff | tree | snapshot
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff | tree | snapshot
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader commit | commitdiff | tree | snapshot
2017-10-03 gmungocJAL-2738 code formatting commit | commitdiff | tree | snapshot
2017-10-02 gmungocJAL-2738 code tidy up, null checks &c commit | commitdiff | tree | snapshot
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology commit | commitdiff | tree | snapshot
2017-10-02 gmungocJAL-2738 filter VEP consequence data to that for curren... commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client... commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 patch tests for https commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2748 formatting commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org commit | commitdiff | tree | snapshot
2017-09-29 gmungocJAL-2738 one sequence feature per (SNP) VCF allele commit | commitdiff | tree | snapshot
2017-09-29 gmungocJAL-2744 indent CSQ lines to catch the eye commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS feature/JAL-2745ebiHttps commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... commit | commitdiff | tree | snapshot
2017-09-28 gmungocJAL-2745 update www.ebi.ac.uk to https commit | commitdiff | tree | snapshot
2017-09-28 gmungocJAL-2738 separate thread to load VCF; update FeatureSet... commit | commitdiff | tree | snapshot
2017-09-28 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-09-28 gmungocJAL-2036 set menus after fully loading AlignFrame commit | commitdiff | tree | snapshot
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry commit | commitdiff | tree | snapshot
2017-09-28 gmungocJAL-2744 simple Feature Details report from Popup menu commit | commitdiff | tree | snapshot
2017-09-28 gmungocJAL-2744 refactor PopupMenu constructor to enable addin... commit | commitdiff | tree | snapshot
2017-09-26 gmungocJAL-2738 transfer VCF variant features to CDS sequences commit | commitdiff | tree | snapshot
2017-09-26 gmungocJAL-2738 JAL-2154 add DBRef from transcript to synthesi... commit | commitdiff | tree | snapshot
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene commit | commitdiff | tree | snapshot
2017-09-26 gmungocJAL-2738 promote setGeneLoci to SequenceI! commit | commitdiff | tree | snapshot
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever... commit | commitdiff | tree | snapshot
2017-09-25 gmungocJAL-2738 getGeneLoci promoted to SequenceI commit | commitdiff | tree | snapshot
2017-09-25 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-09-25 gmungocJAL-2525 return no features if none matches ontology... commit | commitdiff | tree | snapshot
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader commit | commitdiff | tree | snapshot
2017-09-25 gmungocJAL-2738 one constant in codebase for "alleles" attribu... commit | commitdiff | tree | snapshot
2017-09-25 gmungocJAL-2738 extract SNP variants from SNP or MIXED variant... commit | commitdiff | tree | snapshot
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils commit | commitdiff | tree | snapshot
2017-09-22 gmungocJAL-2738 correct handling of reverse strand genes commit | commitdiff | tree | snapshot
2017-09-22 gmungocJAL-2738 lookup GRCh38/37 gene mapping commit | commitdiff | tree | snapshot
2017-09-21 gmungocJAL-2738 compute VCF on peptide, extract AF (allele... commit | commitdiff | tree | snapshot
2017-09-21 gmungocJAL-2738 add chromosome coordinate mappings to transcripts commit | commitdiff | tree | snapshot
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence commit | commitdiff | tree | snapshot
2017-09-21 gmungocJAL-2738 GeneLoci holds mapping of sequence to chromosome commit | commitdiff | tree | snapshot
2017-09-20 kiramtJAL-2662 Adjustments to hidden columns benchmark commit | commitdiff | tree | snapshot
2017-09-19 gmungocJAL-1793 wrapper for plain or indexed VCF + simple... commit | commitdiff | tree | snapshot
2017-09-19 kiramtJAL-2662 Updated README commit | commitdiff | tree | snapshot
2017-09-19 kiramtJAL-2737 Checkstyle error fixes commit | commitdiff | tree | snapshot
2017-09-19 kiramtJAL-2622 Tidied up gitignore, added to README commit | commitdiff | tree | snapshot
2017-09-19 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-09-19 kiramtMerge remote-tracking branch 'origin/task/JAL-2662... commit | commitdiff | tree | snapshot
2017-09-19 gmungocJAL-1793 simple tests of reading raw and indexed VCF... commit | commitdiff | tree | snapshot
2017-09-18 gmungocMerge remote-tracking branch 'origin/patch/JAL-2732... commit | commitdiff | tree | snapshot
2017-09-18 gmungocJAL-2728 fine tuned initial split of split frame view commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterMerge branch 'documentation/JAL-2698_release2103' into... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-2698 new releases.html entry, whatsNew.html and... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterMerge branch 'bug/JAL-2728splitFrameDivision' into... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-1625 ensure we don’t regress on JAL-20 - we always... patch/JAL-2732 commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-1625 javadoc commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-2733 redraw after changing the memory status displa... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-1625 JAL-1900 preserve the original DesktopManager... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-1900 JAL-1625 back out OSX specific double buffer... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-1551 standard code formatting commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-2732 force a redraw after resize/drag to clear... commit | commitdiff | tree | snapshot
2017-09-15 gmungocJAL-2728 use right denominator for min/max ratio calcul... bug/JAL-2728splitFrameDivision commit | commitdiff | tree | snapshot
2017-09-15 gmungocJAL-2728 limit divider to ensure seqs visible (wip!) commit | commitdiff | tree | snapshot
2017-09-15 gmungocJAL-741 add tooltip to feature group checkbox commit | commitdiff | tree | snapshot
2017-09-12 gmungocMerge branch 'bug/JAL-2721fastPaintNPE' into develop commit | commitdiff | tree | snapshot
2017-09-07 Jim ProcterMerge branch 'bug/JAL-2511idAlignment' into develop commit | commitdiff | tree | snapshot
2017-09-07 Jim ProcterJAL-2511 release notes for 2.10.2b1 commit | commitdiff | tree | snapshot
2017-09-07 gmungocJAL-2511 invalidate scale panel holder on font change... bug/JAL-2511idAlignment commit | commitdiff | tree | snapshot
2017-09-07 Jim ProcterJAL-2675 update release date to 7th Sept commit | commitdiff | tree | snapshot
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