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2017-11-13 Jim ProcterJAL-2810 simpler tooltip (assume user will work out... commit | commitdiff | tree | snapshot
2017-11-10 Jim ProcterJAL-2828 allow CalcId to match on String equivalence... doc/JAL-2494_JAL-2828_mergefindAnnotation commit | commitdiff | tree | snapshot
2017-11-10 Jim ProcterJAL-2828 refactored duplicate code for searching lists... commit | commitdiff | tree | snapshot
2017-11-10 gmungocJAL-2829 fixes and unit tests bug/JAL-2829deleteCharsWithGaps commit | commitdiff | tree | snapshot
2017-11-10 gmungocJAL-2562 updated findPosition javadoc to match behaviour commit | commitdiff | tree | snapshot
2017-11-10 kjvdheideJAL-2794 reorganized node select code, added subtree... commit | commitdiff | tree | snapshot
2017-11-10 gmungocJAL-2829 unit tests for failing cases commit | commitdiff | tree | snapshot
2017-11-10 kjvdheideJAL-2794 comments comments comments commit | commitdiff | tree | snapshot
2017-11-10 kjvdheideJAL-2794 most method parameters/class variables made... commit | commitdiff | tree | snapshot
2017-11-10 kjvdheideJAL-2794 comments, selected node now doesn't have to... commit | commitdiff | tree | snapshot
2017-11-10 kiramtJAL-2827 related fixes for stem and non-canonical annot... bug/JAL-2827 commit | commitdiff | tree | snapshot
2017-11-09 kiramtJAL-2827 Fix notched repaint of helix annotation when... commit | commitdiff | tree | snapshot
2017-11-09 kjvdheideJAL-2794 PaintRefresher support, Aptx node selection... commit | commitdiff | tree | snapshot
2017-11-09 kjvdheideJAL-2794 interface comment commit | commitdiff | tree | snapshot
2017-11-09 kjvdheideJAL-2794 Made HashMap with Nodes as keys and sequences... commit | commitdiff | tree | snapshot
2017-11-08 kjvdheideJAL-2794 Aptx instances get their parent alignment... commit | commitdiff | tree | snapshot
2017-11-08 kjvdheideJAL-2794 Cleaning up tree conversion, sequences are... commit | commitdiff | tree | snapshot
2017-11-08 kjvdheideJAL-2794 getters and setters for finding nodes in fores... commit | commitdiff | tree | snapshot
2017-11-08 kjvdheideJAL-2795 created static class for forester conversions commit | commitdiff | tree | snapshot
2017-11-08 kjvdheideJAL-2794 Interface name change (oops) commit | commitdiff | tree | snapshot
2017-11-08 kjvdheideJAL-2794 made JalviewTreeViewerBinding an interface commit | commitdiff | tree | snapshot
2017-11-08 kjvdheideJAL-2794 Added getter for AlignmentViewport to TreeBuilder commit | commitdiff | tree | snapshot
2017-11-08 Jim ProcterMerge branch 'bug/JAL-2742' into develop commit | commitdiff | tree | snapshot
2017-11-08 Jim ProcterRevert "JAL-2742 release notes - pending confirmation... commit | commitdiff | tree | snapshot
2017-11-08 Jim ProcterJAL-2225 release note commit | commitdiff | tree | snapshot
2017-11-08 Jim ProcterMerge branch 'bug/JAL-2225mapMultipleChains' into develop commit | commitdiff | tree | snapshot
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains commit | commitdiff | tree | snapshot
2017-11-07 Jim ProcterJAL-2698 14 Nov 2017 release date for 2.10.3 commit | commitdiff | tree | snapshot
2017-11-07 Jim ProcterJAL-2775 release notes commit | commitdiff | tree | snapshot
2017-11-07 Jim ProcterMerge branch 'imp/JAL-2775' into develop commit | commitdiff | tree | snapshot
2017-11-07 Jim ProcterJAL-2810 i18n tab label commit | commitdiff | tree | snapshot
2017-11-07 kiramtJAL-2774 Added javadoc for new event parameters imp/JAL-2774 commit | commitdiff | tree | snapshot
2017-11-07 Jim ProcterJAL-2810 ‘Close’ is now ‘Cancel’ in SequenceFetcher... commit | commitdiff | tree | snapshot
2017-11-07 Jim ProcterJAL-2810 working back button shown for bulk ID retrieva... commit | commitdiff | tree | snapshot
2017-11-07 kiramtJAL-2774 Fix fastpaint of wrapped alignment commit | commitdiff | tree | snapshot
2017-11-07 kiramtJAL-2821 refactored drawPartialGroupOutline bug/JAL-2821 commit | commitdiff | tree | snapshot
2017-11-07 Jim ProcterJAL-2810 bulk fetch for PDB IDs commit | commitdiff | tree | snapshot
2017-11-07 Jim ProcterJAL-2804 clearer tooltip for autosearch checkbox commit | commitdiff | tree | snapshot
2017-11-06 kjvdheideJAL-2794 simplified/clarified associating leaves to... commit | commitdiff | tree | snapshot
2017-11-06 Jim ProcterJAL-2756 release notes commit | commitdiff | tree | snapshot
2017-11-06 Jim ProcterMerge branch 'bug/JAL-2756sequenceidmessage' into develop commit | commitdiff | tree | snapshot
2017-11-03 Jim ProcterMerge branch 'documentation/JAL-2698_release2103' into... commit | commitdiff | tree | snapshot
2017-11-03 Jim ProcterJAL-2818 modified README for launching jalview from... commit | commitdiff | tree | snapshot
2017-11-03 kjvdheideJAL-2794 created tree viewer binding class commit | commitdiff | tree | snapshot
2017-11-03 kjvdheideJAL-2795 bunch of cleanup and comments commit | commitdiff | tree | snapshot
2017-11-02 kjvdheideJAL-2795 added back test loop for Aptx tree naming... commit | commitdiff | tree | snapshot
2017-11-02 kjvdheideJAL-2795 Reverted code changes needed to cluster from... commit | commitdiff | tree | snapshot
2017-11-02 kjvdheideJAL-2795 Forester now NJ-clusters the DistanceMatrix... commit | commitdiff | tree | snapshot
2017-11-02 kjvdheideJAL-2795 moved matrix conversion to the ForesterMatrix... commit | commitdiff | tree | snapshot
2017-11-01 kjvdheideJAL-2795 Sequence[] references now as SequenceI[] ... commit | commitdiff | tree | snapshot
2017-11-01 kjvdheideJAL-2795 removed sequences[] class variable, more comments commit | commitdiff | tree | snapshot
2017-11-01 kiramtMerge branch 'develop' into imp/JAL-2775 imp/JAL-2775 commit | commitdiff | tree | snapshot
2017-10-31 kiramtJAL-2774 Fix repaint artefacts commit | commitdiff | tree | snapshot
2017-10-31 kiramtJAL-2774 Fixed merge issues commit | commitdiff | tree | snapshot
2017-10-31 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-10-31 Jim ProcterJAL-2810 checkbox label for Autosearch commit | commitdiff | tree | snapshot
2017-10-31 Jim ProcterJAL-2810 default border colour commit | commitdiff | tree | snapshot
2017-10-31 kiramtJAL-2756 update for new EBI https link commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 neater error message commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 added error catching for invalid identifier commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 changed getting index of identifier to Stream... commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 rebuilt MatrixConverter to be purely static commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 finalized method arguments; commited forester... commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 removed unneeded for loop (woops) and initiali... commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 implemented getting/setting identifiers commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 added comments links from ForesterMatrix to... commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 removed now unneeded values variable in Forest... commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 add get for all matrix values to MatrixI ... commit | commitdiff | tree | snapshot
2017-10-30 kjvdheideJAL-2795 foresterMatrix now stores distance values... commit | commitdiff | tree | snapshot
2017-10-29 kjvdheideJAL-2795 more matrix implementations commit | commitdiff | tree | snapshot
2017-10-28 kjvdheideJAL-2795 moved ForesterMatrix to ext.forester commit | commitdiff | tree | snapshot
2017-10-28 kjvdheideJAL-2795 Added get and set values to the converted... commit | commitdiff | tree | snapshot
2017-10-27 Jim ProcterJAL-2810 prototype retrieve ID tab for the Uniprot... commit | commitdiff | tree | snapshot
2017-10-27 kjvdheideJAL-2795 start of Jalview's Matrix conversion commit | commitdiff | tree | snapshot
2017-10-27 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-10-27 Jim ProcterJAL-2804 update search results when enter pressed or... commit | commitdiff | tree | snapshot
2017-10-27 Jim ProcterJAL-2804 checkbox to enable/disable auto search (with... commit | commitdiff | tree | snapshot
2017-10-27 Jim ProcterJAL-2804 kludge method to test if last key event handle... commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-2526 updated javadoc commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideStart of matrix converter commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideAdded proper title to aptx trees commit | commitdiff | tree | snapshot
2017-10-26 kjvdheidetest name change commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideMade FreeUpMemoryTest compatible with modified Calculat... commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2698 update version and cut release branch commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2546 release notes commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecover... commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideAdded getters for scoremodel & scoreparams in TreeBuilder commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideTreeBuilder now stores the used ScoreModel and ScoreParams commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2036 2.10.3 release notes commit | commitdiff | tree | snapshot
2017-10-26 kjvdheidesmall name fixes in TreeBuilder commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideAdded TreeBuilder as parameter to the converter constructor commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideName changed of aptx treebuilder to treeconverter commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideadded getSeqData to TreeBuilder commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2793 cancelling font changed dialog didn't call... commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideAdded full names to the tree algorithm enum commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideadded abbreviations commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideadded enum for the different tree algorithms commit | commitdiff | tree | snapshot
2017-10-26 kjvdheideCouple more thread names commit | commitdiff | tree | snapshot
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