git://source.jalview.org / jalview.git / shortlog
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
jalview.git
2015-01-22 Jim ProcterJAL-1372 JAL-1169 documentation for new commands HIDE_I... commit | commitdiff | tree | snapshot
2015-01-22 gmungocJAL-1619 refactoring / tests to support 'align linked... commit | commitdiff | tree | snapshot
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... commit | commitdiff | tree | snapshot
2015-01-21 Jim Proctertidy up class files that shouldn't be in repo commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-20 Charles Ofoegbuclean up commit | commitdiff | tree | snapshot
2015-01-20 Charles Ofoegbuclean up commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuFurther abstractions and clean up commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-20 Charles Ofoegbubasic house keeping commit | commitdiff | tree | snapshot
2015-01-20 Jim ProcterJAL-1304 revamped annotation file documentation structu... commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation... commit | commitdiff | tree | snapshot
2015-01-20 gmungocJAL-1619 test that reordering cDNA does not change... commit | commitdiff | tree | snapshot
2015-01-20 gmungocJAL-1619 tweaked for better reusability commit | commitdiff | tree | snapshot
2015-01-19 gmungocJAL-1619 refactored cDNA translation; modified codon... commit | commitdiff | tree | snapshot
2015-01-19 gmungocJAL-1636 typed collections now in ResidueProperties commit | commitdiff | tree | snapshot
2015-01-19 gmungocJAL-1636 fix for mouseover of 'X' in translated protein commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 formatting commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in... commit | commitdiff | tree | snapshot
2015-01-18 Jim Procteralways use interface rather than field access commit | commitdiff | tree | snapshot
2015-01-18 gmungocJAL-1619 refactoring wip commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence commit | commitdiff | tree | snapshot
2015-01-17 gmungocJAL-1619 further refactoring commit | commitdiff | tree | snapshot
2015-01-16 gmungocJAL-1619 refactoring in progress for Dna translation commit | commitdiff | tree | snapshot
2015-01-14 gmungocJAL-1619 AlignedCodonFrame in new alignment should... commit | commitdiff | tree | snapshot
2015-01-14 gmungocJAL-1619 modified repaint after 'Align As' action commit | commitdiff | tree | snapshot
2015-01-14 gmungocJAL-1619 Javadoc commit | commitdiff | tree | snapshot
2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save... commit | commitdiff | tree | snapshot
2015-01-14 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot... commit | commitdiff | tree | snapshot
2015-01-14 Charles OfoegbuModified AnnotationColumnChooser to maintain state... features/JAL-1553_select-columns-by-annotation commit | commitdiff | tree | snapshot
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot... commit | commitdiff | tree | snapshot
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh... commit | commitdiff | tree | snapshot
2015-01-12 gmungocJAL-1619 load/align cDNA for protein (wip) commit | commitdiff | tree | snapshot
2015-01-10 Charles OfoegbuJAL-1553 merge commit commit | commitdiff | tree | snapshot
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati... commit | commitdiff | tree | snapshot
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29... commit | commitdiff | tree | snapshot
2015-01-09 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into... commit | commitdiff | tree | snapshot
2015-01-09 Jim ProcterMerge branch 'JAL-1483_29dev' into develop commit | commitdiff | tree | snapshot
2015-01-09 Jim ProcterJAL-1483 formatting commit | commitdiff | tree | snapshot
2015-01-09 Jim ProcterJAL-1483 remember to look at base dataset sequence... commit | commitdiff | tree | snapshot
2015-01-09 gmungocJAL-1588 check Chimera session file still exists commit | commitdiff | tree | snapshot
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session commit | commitdiff | tree | snapshot
2015-01-08 Jim ProcterMerge branch 'JAL-1483_29dev' into develop commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 patches to make test case pass: hamming distan... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 basic test of sequence similarity score model... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 source formatting commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfig... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 register feature similarity model commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 null features not displayed commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 check dataset for features if none found on... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 organise imports commit | commitdiff | tree | snapshot
2015-01-07 gmungocJAL-845 TODO comment added commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 making type visible also adds it to registry commit | commitdiff | tree | snapshot
2015-01-07 gmungocJAL-1551 formatting applied commit | commitdiff | tree | snapshot
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related commit | commitdiff | tree | snapshot
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project' commit | commitdiff | tree | snapshot
2015-01-04 gmungocJAL-1619 first draft of 'linked protein and cDNA' commit | commitdiff | tree | snapshot
2014-12-28 gmungocMerge branch 'features/JAL-1596ChimeraREST' into develop commit | commitdiff | tree | snapshot
2014-12-28 gmungocJAL-845 first working linked edit protein -> cDNA commit | commitdiff | tree | snapshot
2014-12-22 Charles OfoegbuPatch to synchronize title svg and allignment svg scrolling commit | commitdiff | tree | snapshot
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-1328 System.exit() removed as it aborts an entire... commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-845 first simple unit tests added commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-845 move main method to 'test' class (needs further... commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-1618 feature parsing bug (and formatting) commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-1619 refactorings: Map, StringBuilder, Override commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-845 formatting only (block parentheses) commit | commitdiff | tree | snapshot
2014-12-16 gmungocJAL-1619 don't copy hidden or RNA SS annotations to... commit | commitdiff | tree | snapshot
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... commit | commitdiff | tree | snapshot
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... features/JAL-1605_html-svg-export commit | commitdiff | tree | snapshot
2014-12-14 Mungo CarstairsJAL-1596 set HTTP 1.1 in HttpClient commit | commitdiff | tree | snapshot
2014-12-12 gmungocJAL-845 don't translate hidden annotation (plus formatting) commit | commitdiff | tree | snapshot
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched commit | commitdiff | tree | snapshot
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-12-08 Charles Ofoegbumerge commit commit | commitdiff | tree | snapshot
2014-12-08 Charles OfoegbuJAL-1613 hotfix for duplicated sequence after pairwise... commit | commitdiff | tree | snapshot
2014-12-08 Charles OfoegbuJAL-1613 hotfix for duplicated sequence after pairwise... commit | commitdiff | tree | snapshot
2014-12-08 Charles OfoegbuAdded annotation export configuration for Html export... commit | commitdiff | tree | snapshot
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into... commit | commitdiff | tree | snapshot
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export... commit | commitdiff | tree | snapshot
2014-12-05 Charles Ofoegbumodified html css commit | commitdiff | tree | snapshot
2014-12-05 Charles OfoegbuJAL-1605 merge commit commit | commitdiff | tree | snapshot
2014-12-05 Charles OfoegbuChange the Html export to utilize svg commit | commitdiff | tree | snapshot
2014-12-05 gmungocJAL-1614 flag 'protein' removed commit | commitdiff | tree | snapshot
2014-12-05 gmungocJAL-1614 flag 'protein' removed commit | commitdiff | tree | snapshot
2014-12-05 gmungocJAL-1609 refactored colour by sequence command, now... commit | commitdiff | tree | snapshot
2014-12-05 gmungocMerge branch 'Release_2_8_2_Branch' of local repository... commit | commitdiff | tree | snapshot
2014-12-03 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-12-03 gmungocJAL-1609 wip on Chimera colour by sequence commit | commitdiff | tree | snapshot
2014-12-03 Jim ProcterMerge branch 'JAL-1517_release282' into Release_2_8_2_B... commit | commitdiff | tree | snapshot
next