source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	James Procter <j.procter@dundee.ac.uk>
	Fri, 19 May 2023 16:11:26 +0000 (17:11 +0100)
committer	James Procter <j.procter@dundee.ac.uk>
	Fri, 19 May 2023 16:11:26 +0000 (17:11 +0100)
commit	80b889f0cca49103e1b20ed806755a0719789906
tree	36f4d99caeaaa27d8bc610c70e43e7926a12e81c	tree \| snapshot
parent	8288438dd58cfc2d1fe18a060afda0d647b85c32	commit \| diff

JAL-1551 spotlessApply

139 files changed:

src/jalview/analysis/AlignmentSorter.java		diff \| blob \| history
src/jalview/analysis/AlignmentUtils.java		diff \| blob \| history
src/jalview/analysis/AnnotationSorter.java		diff \| blob \| history
src/jalview/analysis/AverageDistanceEngine.java		diff \| blob \| history
src/jalview/analysis/TreeModel.java		diff \| blob \| history
src/jalview/api/AlignViewportI.java		diff \| blob \| history
src/jalview/appletgui/TreeCanvas.java		diff \| blob \| history
src/jalview/bin/Cache.java		diff \| blob \| history
src/jalview/datamodel/Alignment.java		diff \| blob \| history
src/jalview/datamodel/AlignmentAnnotation.java		diff \| blob \| history
src/jalview/datamodel/BinaryNode.java		diff \| blob \| history
src/jalview/datamodel/ColumnSelection.java		diff \| blob \| history
src/jalview/datamodel/ContactListI.java		diff \| blob \| history
src/jalview/datamodel/ContactListImpl.java		diff \| blob \| history
src/jalview/datamodel/ContactListProviderI.java		diff \| blob \| history
src/jalview/datamodel/ContactMapHolder.java		diff \| blob \| history
src/jalview/datamodel/ContactMatrix.java		diff \| blob \| history
src/jalview/datamodel/ContactMatrixI.java		diff \| blob \| history
src/jalview/datamodel/ContactRange.java		diff \| blob \| history
src/jalview/datamodel/GroupSet.java		diff \| blob \| history
src/jalview/datamodel/SeqDistanceContactMatrix.java		diff \| blob \| history
src/jalview/datamodel/Sequence.java		diff \| blob \| history
src/jalview/datamodel/SequenceNode.java		diff \| blob \| history
src/jalview/datamodel/annotations/AnnotationRowBuilder.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AlignViewport.java		diff \| blob \| history
src/jalview/gui/AlignmentPanel.java		diff \| blob \| history
src/jalview/gui/AnnotationLabels.java		diff \| blob \| history
src/jalview/gui/AnnotationPanel.java		diff \| blob \| history
src/jalview/gui/Desktop.java		diff \| blob \| history
src/jalview/gui/OverviewCanvas.java		diff \| blob \| history
src/jalview/gui/QuitHandler.java		diff \| blob \| history
src/jalview/gui/StructureChooser.java		diff \| blob \| history
src/jalview/gui/TreeCanvas.java		diff \| blob \| history
src/jalview/gui/TreePanel.java		diff \| blob \| history
src/jalview/gui/WebserviceInfo.java		diff \| blob \| history
src/jalview/io/FileParse.java		diff \| blob \| history
src/jalview/io/NewickFile.java		diff \| blob \| history
src/jalview/io/PContactPredictionFile.java		diff \| blob \| history
src/jalview/io/StockholmFile.java		diff \| blob \| history
src/jalview/io/vamsas/Tree.java		diff \| blob \| history
src/jalview/jbgui/GStructureChooser.java		diff \| blob \| history
src/jalview/project/Jalview2XML.java		diff \| blob \| history
src/jalview/renderer/AnnotationRenderer.java		diff \| blob \| history
src/jalview/renderer/AnnotationRendererFactory.java		diff \| blob \| history
src/jalview/renderer/ContactGeometry.java		diff \| blob \| history
src/jalview/renderer/ContactMapRenderer.java		diff \| blob \| history
src/jalview/renderer/OverviewResColourFinder.java		diff \| blob \| history
src/jalview/renderer/api/AnnotationRowRendererI.java		diff \| blob \| history
src/jalview/renderer/seqfeatures/FeatureRenderer.java		diff \| blob \| history
src/jalview/structures/models/AAStructureBindingModel.java		diff \| blob \| history
src/jalview/viewmodel/AlignmentViewport.java		diff \| blob \| history
src/jalview/ws/datamodel/MappableContactMatrixI.java		diff \| blob \| history
src/jalview/ws/datamodel/alphafold/MappableContactMatrix.java		diff \| blob \| history
src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java		diff \| blob \| history
src/jalview/ws/dbsources/EBIAlfaFold.java		diff \| blob \| history
src/jalview/xml/binding/embl/EntrySetType.java		diff \| blob \| history
src/jalview/xml/binding/embl/EntryType.java		diff \| blob \| history
src/jalview/xml/binding/embl/ObjectFactory.java		diff \| blob \| history
src/jalview/xml/binding/embl/ROOT.java		diff \| blob \| history
src/jalview/xml/binding/embl/XrefType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/AlcodonFrame.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Annotation.java		diff \| blob \| history
src/jalview/xml/binding/jalview/AnnotationColourScheme.java		diff \| blob \| history
src/jalview/xml/binding/jalview/AnnotationElement.java		diff \| blob \| history
src/jalview/xml/binding/jalview/DoubleMatrix.java		diff \| blob \| history
src/jalview/xml/binding/jalview/DoubleVector.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Feature.java		diff \| blob \| history
src/jalview/xml/binding/jalview/FeatureMatcher.java		diff \| blob \| history
src/jalview/xml/binding/jalview/FeatureMatcherSet.java		diff \| blob \| history
src/jalview/xml/binding/jalview/FilterBy.java		diff \| blob \| history
src/jalview/xml/binding/jalview/JalviewModel.java		diff \| blob \| history
src/jalview/xml/binding/jalview/JalviewUserColours.java		diff \| blob \| history
src/jalview/xml/binding/jalview/MapListType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Mapping.java		diff \| blob \| history
src/jalview/xml/binding/jalview/MatrixType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/NoValueColour.java		diff \| blob \| history
src/jalview/xml/binding/jalview/ObjectFactory.java		diff \| blob \| history
src/jalview/xml/binding/jalview/PcaDataType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Pdbentry.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Property.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Sequence.java		diff \| blob \| history
src/jalview/xml/binding/jalview/SequenceSet.java		diff \| blob \| history
src/jalview/xml/binding/jalview/SequenceType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/ThresholdType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/VAMSAS.java		diff \| blob \| history
src/jalview/xml/binding/jalview/WebServiceParameterSet.java		diff \| blob \| history
src/jalview/xml/binding/jalview/package-info.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/CitationType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/CofactorType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/CommentType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ConsortiumType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/DbReferenceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/Entry.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/EventType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/EvidenceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/EvidencedStringType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/FeatureType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/GeneLocationType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/GeneNameType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/GeneType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ImportedFromType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/InteractantType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/IsoformType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/KeywordType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/LocationType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/MoleculeType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/NameListType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ObjectFactory.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/OrganismNameType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/OrganismType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/PersonType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/PhysiologicalReactionType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/PositionType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/PropertyType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ProteinExistenceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ProteinType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ReactionType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ReferenceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/SequenceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/SourceDataType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/SourceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/StatusType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/SubcellularLocationType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/Uniprot.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/package-info.java		diff \| blob \| history
src/mc_view/PDBChain.java		diff \| blob \| history
test/jalview/analysis/AlignmentUtilsTests.java		diff \| blob \| history
test/jalview/analysis/AverageDistanceEngineTest.java		diff \| blob \| history
test/jalview/datamodel/AlignmentTest.java		diff \| blob \| history
test/jalview/datamodel/ContactRangeTest.java		diff \| blob \| history
test/jalview/datamodel/PAEContactMatrixTest.java		diff \| blob \| history
test/jalview/gui/AlignmentPanelTest.java		diff \| blob \| history
test/jalview/gui/SeqPanelTest.java		diff \| blob \| history
test/jalview/gui/structurechooser/StructureChooserQuerySourceTest.java		diff \| blob \| history
test/jalview/project/Jalview2xmlTests.java		diff \| blob \| history
test/jalview/renderer/OverviewRendererTest.java		diff \| blob \| history
test/jalview/renderer/OverviewResColourFinderTest.java		diff \| blob \| history
test/jalview/renderer/seqfeatures/FeatureColourFinderTest.java		diff \| blob \| history

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