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JAL-2422 ChimeraX paths (versions up to 1.0) added for Windows
[jalview.git] / examples /
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy tree | commitdiff
2020-03-03 Jim ProcterJAL-3547 groovy script to get the conservation sequence... tree | commitdiff
2020-02-17 Jim ProcterJAL-3536 failing test and test data tree | commitdiff
2019-05-27 gmungocJAL-3141 test file in test folder not examples tree | commitdiff
2019-04-26 Jim ProcterJAL-3150 examples/exampleFile.jvp for updated manual... tree | commitdiff
2019-03-25 gmungocJAL-3127 scripts updated for method signature change tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 more complex project test - where sequences... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 failing test for legacy projects and fixing... tree | commitdiff
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-08-31 Jim ProcterMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno... tree | commitdiff
2018-08-28 Jim ProcterJAL-3003 different coloured borders in demo annotation... tree | commitdiff
2018-08-02 Ben SoaresJAL-3053 tree | commitdiff
2018-07-31 bsoaresStockholm file for test tree | commitdiff
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number... tree | commitdiff
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2017-12-08 gmungocJAL-2843 example filters added tree | commitdiff
2017-12-01 Jim ProcterMerge branch 'develop' into bugs/JAL-2780_JAL-2781_pdbn... tree | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest tree | commitdiff
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... tree | commitdiff
2017-10-20 Jim ProcterJAL-547 fix NPE when no selection available tree | commitdiff
2017-10-20 Jim ProcterJAL-547 only generate matrix for current selection... tree | commitdiff
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... tree | commitdiff
2017-10-20 Jim ProcterJAL-547 updated the PID script for 2.10.x series score... tree | commitdiff
2017-10-18 Jim ProcterJAL-2781 example fragment with missing backbone atoms... tree | commitdiff
2017-10-18 Jim ProcterJAL-2781 example fragment with missing backbone atoms... tree | commitdiff
2017-10-18 Jim ProcterJAL-2780 example fragment with negative RESNUM tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-08-09 Jim ProcterJAL-2418 JAL-2398 JAL-2397 simpler documentation for... tree | commitdiff
2017-08-09 Jim ProcterJAL-2397 JAL-2398 documentation for reinstating legacy... tree | commitdiff
2017-08-07 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-04 gmungocJAL-2500 JAL-2365 lightGray changed to lightgray for... tree | commitdiff
2017-08-04 gmungocJAL-2500 JAL-2365 lightGray changed to gray in example... tree | commitdiff
2017-08-03 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-03 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-03 gmungocJAL-2500 JAL-2365 feature colour "gray" _not_ "lightgra... tree | commitdiff
2017-08-03 gmungocJAL-2500 JAL-2365 lightGray changed to lightgray for... tree | commitdiff
2017-08-03 gmungocJAL-2500 JAL-2365 lightGray changed to gray in example... tree | commitdiff
2017-08-02 Jim ProcterMerge branch 'bug/JAL-2321' into bug/JAL-2321_merged tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-28 gmungocJAL-2631 make minimum colour not white tree | commitdiff
2017-07-28 gmungocJAL-2631 add graduated colour kdH features to example tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-05-25 gmungocJAL-2505 removed SequenceFeature constructor JAL-1641... tree | commitdiff
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct... tree | commitdiff
2017-05-16 Jim ProcterJAL-384 - groovy scripts for conserved/unconserved... tree | commitdiff
2017-05-12 Jim ProcterJAL-2228 updated script in help docs, renamed docs... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient... tree | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 applet doc for showOccupancy parameter tree | commitdiff
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated... tree | commitdiff
2017-02-23 kiramtJAL-2388 Unit tests in progress tree | commitdiff
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-02-07 gmungocJAL-2397 flag provided for 2.10.1 PCA gap calculation... tree | commitdiff
2017-02-07 gmungocJAL-2398 include 'compatibility mode' for C->R score... tree | commitdiff
2017-02-07 gmungocJAL-2397 scripts to toggle 2.10.1 / 2.10.2 PCA calculat... tree | commitdiff
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-18 gmungocJAL-2228 removed FeatureCounterI in favour of FeatureSe... tree | commitdiff
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea... tree | commitdiff
2017-01-11 gmungocJAL-2344 groovy script that registers a new file format tree | commitdiff
2017-01-09 gmungocJAL-2371 pull up isNucleotide to SequenceCollectionI tree | commitdiff
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... tree | commitdiff
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-15 kiramtJAL-2316 Changes following review. tree | commitdiff
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop tree | commitdiff
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring... tree | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6... tree | commitdiff
2016-11-12 Jim ProcterJAL-2321 added test data. Now need a test. tree | commitdiff
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... tree | commitdiff
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'patch/JAL-2234_renameFER1_ARATH' into... tree | commitdiff
2016-10-24 Jim ProcterJAL-2234 reordered seqs (after sequence data was reorde... tree | commitdiff
2016-10-24 Jim ProcterJAL-2234 rename seqs for linked jalview examples tree | commitdiff
2016-10-24 Jim ProcterJAL-2197 renamed Jnet to Jared in help, web services... tree | commitdiff
2016-10-24 Jim ProcterJAL-2197 add jpredfile as alternative form of jnetfile... tree | commitdiff
2016-10-19 Jim ProcterJAL-2269 JAL-2195 review and revised test tree | commitdiff
2016-10-13 Jim ProcterJAL-2234 switch FER1_ARATH and FER2_ARATH in ferredoxin... tree | commitdiff
2016-10-12 Jim ProcterJAL-2234 switched FER1_ARATH and FER2_ARATH in example... tree | commitdiff
2016-10-10 tcofoegbuJAL-2262 JAL-2195 unit test for bug bug/JAL-2262_dnd-for-local-structure-files tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 license header tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-04 Jim ProcterJAL-2005 JAL-599 test alignment and features for checki... tree | commitdiff
2016-09-30 gmungocJAL-2234 FER1_ARATH renamed FER2_ARATH and vice versa tree | commitdiff
2016-09-25 Jim ProcterJAL-2228 groovy demo for FeatureSetCounterI tree | commitdiff
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