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JAL-1619 refactoring / tests to support 'align linked dna as protein'
[jalview.git]
/
src
/
jalview
/
analysis
/
AlignSeq.java
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
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2014-11-12
Jim Procter
JAL-674 patch broken getMapping function
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2014-10-30
Jim Procter
JAL-674 return original and replacement sequences and...
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2014-10-21
Jim Procter
JAL-674 JAL-1551 imports dropped during merge
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2014-10-21
Jim Procter
JAL-674 patch for duplicate row bug
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2014-10-21
Jim Procter
JAL-674 patch to ensure existing annotation is properly...
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2014-10-21
Jim Procter
JAL-674 JAL-207 getTers for aligned sequences in datase...
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2014-10-21
Jim Procter
JAL-674 refactor method to match and transfer annotatio...
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2014-09-23
darolmar
JAL-1355
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2014-06-06
Jim Procter
JAL-1517 source formatting
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2013-06-18
Jim Procter
JAL-674 fix the mapping generation algorithm
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2012-11-17
jprocter
method to construct sequence mapping for matching posit...
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2012-11-17
jprocter
convenience method for performing pairwise alignment
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2012-11-17
jprocter
formatting and javadoc
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2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-03
jprocter
formatting
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2012-09-06
jprocter
JAL-1013 - employ index parameter rather than hardcode...
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2012-09-02
jprocter
JAL-1007 refactored code and patched calculation bug
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2011-10-10
jprocter
update author list in license for (JAL-826)
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2011-09-27
jprocter
apply version 2.7 copyright
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2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
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2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
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2010-09-23
jprocter
apply jalview code style
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-05-12
jprocter
fix for JAL-527
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2010-04-30
jprocter
jalview 2.5 release banner
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2009-11-02
jprocter
gracefully cope with non-standard nucleotide or amino...
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2009-06-08
jprocter
apply gpl development license
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2008-09-04
jprocter
merge from 2_4_Release branch
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2007-04-11
jprocter
fixed base lookup bug in dna pairwise alignment and...
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2007-02-07
amwaterhouse
Formatting
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2006-12-06
jprocter
general pairwise substitution score models for pairwise...
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2006-12-05
amwaterhouse
sequence is char []
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2006-10-10
amwaterhouse
aaIndex replaces aaHash
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2006-08-21
amwaterhouse
header updated
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2006-07-19
amwaterhouse
Check for all gapped seqs
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2006-07-18
amwaterhouse
Works on strings, not seqs
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2006-07-07
amwaterhouse
Sequence numbering maintained
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2005-12-15
amwaterhouse
Prevents confusing extra line being output in Java...
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2005-12-06
amwaterhouse
after merge
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2005-06-30
amwaterhouse
Formatting changes
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2005-06-08
amwaterhouse
Formatted source
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2005-06-08
amwaterhouse
GPL license added
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2004-11-18
amwaterhouse
make variable public
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2004-11-02
amwaterhouse
Jalview Imported Sources
start
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