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JAL-4059 Converting Pattern/Matcher methods that are possibly incompatible with JS...
[jalview.git]
/
src
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jalview
/
api
/
2023-09-06
James Procter
JAL-4259 construct a new SequenceRenderer when renderin...
tree
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commitdiff
2023-09-05
James Procter
JAL-629 use JalviewStructureDisplayI in place of Struct...
tree
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commitdiff
2023-07-04
James Procter
JAL-4117 JAL-1551 source licensing
tree
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
tree
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commitdiff
2023-05-12
James Procter
JAL-2349 allow PAE or other contact matrices to hold...
tree
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commitdiff
2023-02-27
James Procter
JAL-4134 allow tree groups to be stored/recovered on...
tree
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commitdiff
2023-02-13
Ben Soares
JAL-4125 Move confirmation of closing external viewer...
tree
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commitdiff
2022-10-29
Jim Procter
Merge branch 'features/JAL-4061_and_JAL-4062_findselect...
tree
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commitdiff
2022-09-15
Jim Procter
JAL-4061 use alignment panel’s feature renderer to...
tree
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commitdiff
2022-09-15
Jim Procter
JAL-4062 avc operation and model method for copying...
tree
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commitdiff
2022-09-14
Jim Procter
JAL-4061 JAL-4062 Find can now search features
tree
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commitdiff
2022-06-10
Jim Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-02-16
Jim Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2021-10-18
Jim Procter
JAL-3904 failing test
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3863 passing test to verify a uniprot accession...
tree
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commitdiff
2021-09-02
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
tree
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commitdiff
2021-08-11
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into feature...
tree
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commitdiff
2020-09-16
Jim Procter
JAL-3748 store an AlignmentView for the complement...
tree
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commitdiff
2020-08-27
Ben Soares
Merge branch 'releases/Release_2_11_1_Branch' into...
merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch
tree
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commitdiff
2020-08-17
Jim Procter
JAL-3490 merged with 2.11.2 develop
tree
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commitdiff
2020-07-31
Ben Soares
Merge branch 'releases/Release_2_11_1_Branch' into...
tree
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commitdiff
2020-06-29
Jim Procter
Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...
tree
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commitdiff
2020-05-19
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
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commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
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commitdiff
2020-04-25
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3407 add GPL license to Jalview source files
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-09
gmungoc
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
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commitdiff
2020-02-20
gmungoc
JAL-2422 pull-up refactoring of structure commands...
tree
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commitdiff
2020-02-18
Jim Procter
JAl-3187 JAL-3535 JAL-3534 update open feature settings...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3187 alternative solution - gather feature settings...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 view controller UI api method to show feature...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 convenience method on SplitContainerI to retri...
tree
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commitdiff
2020-02-06
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
tree
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commitdiff
2020-02-04
gmungoc
JAL-2422 fixed stopProgressBar (broken in pull up refac...
tree
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commitdiff
2020-02-04
gmungoc
JAL-2422 pull up refactoring in preparation for Chimera...
tree
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commitdiff
2019-12-11
gmungoc
JAL-3490 revised layout and search algorithm (more...
tree
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commitdiff
2019-12-09
gmungoc
JAL-3490 pull up getViewAsVisibleContigs to base class...
tree
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-07-10
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3330 javadoc
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 mergeFeatureStyles - needs test coverage
tree
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commitdiff
2019-06-18
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into merge...
tree
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commitdiff
2019-06-14
gmungoc
JAL-3302 transfer visible 'linked' features to Chimera
tree
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commitdiff
2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-04-18
hansonr
explicit Hashtable objects
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-2839findWi...
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3049colour...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-2791exportFilteredFeature' into...
tree
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commitdiff
2019-02-18
gmungoc
JAL-3187 'on top' optional for complementary features
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 findFeaturesAtResidue answer in render order...
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 (hacked up) show complement features on struct...
tree
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commitdiff
2019-01-18
gmungoc
JAL-3187 basic first version for tooltips only (renderi...
tree
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commitdiff
2019-01-17
gmungoc
Merge branch 'develop' into Jalview-BH/JAL-3026-JAL...
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
tree
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
tree
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commitdiff
2018-12-19
gmungoc
JAL-2791 JAL-2808 correct Javadoc for api method
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup() to add group...
tree
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commitdiff
2018-10-16
Jim Procter
viewport flag to indicate when structure view needs...
tree
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commitdiff
2018-09-27
gmungoc
JAL-2791 new method to test if feature fails colour...
tree
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commitdiff
2018-09-27
gmungoc
JAL-2791 method that tests all conditions for feature...
tree
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commitdiff
2018-07-20
gmungoc
JAL-3048 revised AlignExportSettings dialog with respon...
tree
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commitdiff
2018-07-11
Jim Procter
JAL-3048 refactored export settings to bean+dialog...
Jalview-BH/JAL-3048_exportSettingsrefactor
tree
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commitdiff
2018-07-06
gmungoc
Merge branch 'bug/JAL-3049colourCellTooltip' into Jalvi...
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 JAL-2069 colour icon tooltip including by...
tree
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commitdiff
2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
tree
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commitdiff
2018-05-04
gmungoc
JAL-1767 refactorings to enable faithful restore of...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
tree
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commitdiff
2018-04-12
gmungoc
JAL-1847 minor post-review updates
tree
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commitdiff
2018-04-12
gmungoc
JAL-2944 tidies for review comments
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 JAL-2944 make superposition step a configurabl...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 expose UI update methods in api
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 remove modal prompt logic and expose methods...
tree
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commitdiff
2018-03-14
gmungoc
JAL-2933 pass viewport in Finder constructor, find...
bug/JAL-2839findWithHidden
tree
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commitdiff
2018-03-14
gmungoc
JAL-2933 gui and applet Finder hold a FinderI per viewport
tree
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commitdiff
2018-02-20
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2902 - isBusy and hasMapping methods so client...
tree
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
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commitdiff
2017-12-11
gmungoc
JAL-2843 add colour by attribute, and no value colour...
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 FeatureRenderer.getFeatureFilters returns...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range tooltip...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 refactor KeyedMatcher as FeatureMatcher with...
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-16
gmungoc
JAL-2069 removed unused and redundant thresholdIsMinMax
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 spike updated with latest
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 support filter/colour by nested attribute...
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike branch with latest
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 add attributeName and noValueColour to Feature...
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 spike updated with latest
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 feature filters held on FeatureRenderer, getCo...
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 reverted to develop (attribute filters removed)
tree
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commitdiff
2017-10-31
gmungoc
JAL-2808 revised util.matcher package, 2 filter conditi...
tree
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commitdiff
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