experiment with reinstating the sandbox permissions
[jalview.git] / src / jalview / appletgui / AlignFrame.java
2012-11-08 jproctertidy imports
2012-11-07 jprocterJAL-957 manual update to applet authorlist - need to...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-25 jprocterJAL-1031 allow empty selections to pass through to...
2012-09-24 jprocterJAL-958 normalise logo menu options in applet
2012-06-13 jprocterjavatidy
2012-06-12 jprocterJAL-1115 refactor reordering code operating directly...
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from...
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2012-05-24 jprocterpatch for occasional NPE when applet is quit
2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotatio...
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview...
2012-05-23 jproctertodo JAL-1104 : functions to refactor
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2011-10-28 jprocter(JAL-885) RNA helix and purine pyrimidine colouring...
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-21 jprocterRefactored alignment viewport to use common base, exten...
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-09-16 jprocterJAL-468 JAL-936 sort alignment by tree and autosort...
2011-08-30 jprocterpatch for JAL-729 - NPE avoided and cut and paste impor...
2011-08-15 jprocterJAL-904 added scrollToRow and scrollToColumn methods...
2011-07-28 jprocteradded 'since 2.x notes to parameters'. User configurabl...
2011-07-05 jprocterRevert "Revert "needed for linkedapplets_ng.html (JAL...
2011-07-05 jprocterRevert "needed for linkedapplets_ng.html (JAL-859,JAL...
2011-07-05 jprocterneeded for linkedapplets_ng.html (JAL-859,JAL-469)
2011-07-05 jprocterwhole frame should be validated.
2011-06-30 jprocterset initial annotation panel height appropriately ...
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-05-05 jprocterjavadoc and informative error message when external...
2011-02-14 jprocterJAL-769
2011-02-14 jprocterJAL-621 and JAL-564
2011-02-04 jproctergroup associated annotation and logos JAL-516 JAL-759
2011-01-21 jprocterrelaxed ID matching parameter JAL-753 and sortBy JAL-754
2011-01-17 jprocterJAL-750 and JAL-451
2011-01-12 jprocterjavascript callback for selection, mousover, and functi...
2010-12-14 jprocterrefactored and patched for JAL-721
2010-09-23 jprocterrevised author list
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-08-31 jprocternotes re JAL-623 and JAL-583, new api methods for addin...
2010-08-25 jprocterexcluded methods related to broken Jmol applet binding...
2010-08-20 jprocterrefactored external structure viewer binding API calls...
2010-07-21 jprocterURLs that begin with javascript: are opened in the...
2010-06-29 jprocternew ajax api methods for linking existing jmol viewers...
2010-06-11 jprocterpatched for JAL-531 - only display full symbol distribu...
2010-06-06 jprocterpatch for JAL-542
2010-04-30 jproctersort by length
2010-04-30 jprocterjalview 2.5 release banner
2010-04-29 jprocterisAligned assertion (bug 0008144)
2010-04-29 jprocterhide/show selected region menu entries and key bindings
2010-04-28 jproctermake groups from selection
2010-04-26 jprocterbuild date output in the About box, and build details...
2010-04-23 jprocterrefresh table method
2010-04-16 jprocterexport graduated feature colors
2009-06-08 jprocterapply gpl development license
2009-03-17 jproctersortbytree parameter added and undo re-instated for...
2009-02-06 jproctershowUnconserved and updated reference
2008-11-12 jprocterautomatic scrolling option added to view
2008-09-04 jproctermerge from 2_4_Release branch
2008-06-26 jprocteradded URLEncoder.encode to properly escape CGI encoded...
2008-04-21 jproctercentrecolumnlabels format menu item and parameter added...
2007-11-16 jproctertodo for sortbyPID operating on current selection rathe...
2007-10-27 jproctermust do any modification to menus before they are embed...
2007-10-27 jprocterrefactored embedded menu machinery
2007-10-26 jprocteradd mac dependent use of embedded menu bar rather than...
2007-10-10 jprocterfeatureGroup show/hide and newView methods for applet...
2007-08-01 jprocteradded tree as an applet to application servlet parameter
2007-05-02 jprocterrefactored do and undo() method to take array of alignm...
2007-04-27 amwaterhouseAlignment properties available
2007-04-26 amwaterhouseAlignment Properties required for annotation file
2007-04-25 amwaterhouseExport annotations with properties
2007-04-12 amwaterhouseNumber pad keys can be used in cursor mode
2007-03-23 amwaterhouseslide is transparent to hidden columns
2007-02-27 amwaterhouseUse paintAlignment
2007-02-07 amwaterhouseFormatting
2007-02-01 amwaterhouseremoved deprecated bits
2007-01-31 amwaterhouseDont export annotations if not visible
2007-01-30 amwaterhouseOutput groups in annotation file
2007-01-29 amwaterhouseNew view copies annotations across
2007-01-25 amwaterhouseAnnotations move when full alignment edited
2007-01-25 amwaterhouseOutput annotations
2007-01-24 amwaterhouseoutput now takes alignment, not just sequences
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2007-01-19 amwaterhouseexport features/annotations not for import
2007-01-19 amwaterhouseApplet can output and load annotations, features
2007-01-17 amwaterhouseDont set the font of alignFrameMenubarcvs update applet...
2007-01-04 amwaterhouseSend new sequences when firing alignment changed
2006-12-21 amwaterhousegetSequenceAsString
2006-12-06 jproctertypo fix.
2006-11-27 amwaterhouseAllow new window from output sequences
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-22 amwaterhouseView name
next