JAL-2909 Tidy up bam file cigar code
[jalview.git] / src / jalview / appletgui / AlignmentPanel.java
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
2017-09-01 gmungocJAL-2488 remove finalize methods
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-07-31 kiramtJAL-2634 Make overview box full height when alignment... bug/JAL-2634
2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView
2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll positi...
2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scrol...
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview...
2017-05-26 kiramtJAL-2491 Missed port to applet from JAL-1691 bug/JAL-2491
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-05-15 kiramtJAL-2491 Tidies
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of...
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into...
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency...
2017-05-12 kiramtJAL-2491 Added adjustment methods to be called directly
2017-05-12 kiramtJAL-2491 Tweaks for applet
2017-05-11 kiramtJAL-2491 First port to applet
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-03 gmungocJAL-2435 further adjustments to behaviour in split...
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers...
2016-11-02 Jim ProcterJAL-966 JAL-345 JAL-1738 quick rewrite of scrollToPosit...
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-09-22 gmungocJAL-2216 finalize call super.finalize()
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-06 gmungocJAL-1799 tweaked calculation for applet, now showing...
2015-07-06 gmungocJAL-1799 equivalent logic in applet
2015-05-01 gmungocJAL-1690 refining 'copy format from' as applied to...
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-27 Jim Procterorganise imports
2014-11-27 Jim ProcterJAL-966 promote getName to an api method
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-07-02 Jim Procterrevalidate appears to have gone away ?? (java 1.7 upgra...
2014-06-13 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-1483_featu...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-27 Jim ProcterJAL-1402 conditional logic to ensure annotation & label...
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-21 Jim ProcterJAL-967 JAL-1482 new feature renderer api - needs more...
2014-04-04 Jim ProcterJAL-1211 - set annotation panel height according to...
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-11-08 jproctertidy imports
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-24 jprocterJAL-958 JAL-966 refactor group/alignment associated...
2012-08-29 jprocterJAL-1155 fix panel length calculation for grouped graph...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-21 jprocterextend alignPanel api with OOMHandler call to raise...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-07-22 jprocterensure propagation of colour change on annotation updat...
2011-07-18 jprocterfixed mouseover problem - still need to deal with flick...
2011-06-30 jprocterset initial annotation panel height appropriately ...
2011-06-29 jprocterensure annotation height adjuster doesn't disappear...
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-04-21 jproctermoved to same place as in jalview.gui
2011-02-18 jprocterfix scrolltoposition behaviour and new alignmentPanel api
2011-02-14 jprocterJAL-621 (mouseover debugging) and JAL-564 (annotation...
2011-02-04 jprocter1.2ish awt methods
2011-02-04 jprocter1.2ish awt methods and excluding unused code
2011-02-04 jprocteradjustable annotation panel height and vertical scrollb...
2011-01-21 jproctersearch result highlighting and scrolling and some patch...
2011-01-18 jprocterpatch for JAL-695 - need to test if this is observed...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-11-12 jprocterautomatic scrolling option added to view
2008-09-04 jproctermerge from 2_4_Release branch
2008-07-18 jprocterSequence label colour stored for each sequence group
2007-02-27 amwaterhouseUse paintAlignment
2007-02-07 amwaterhouseFormatting
2006-12-05 amwaterhouseSet startRes 0 for switch to wrap view
2006-11-21 amwaterhouseSet start seq and end seq correctly
2006-11-14 amwaterhouseCommands, history, consensus, refresh updated
2006-10-03 amwaterhouseCheck on vscrollMax values
2006-09-01 amwaterhouseMAC moved to viewport
2006-08-21 amwaterhouseheader updated
2006-08-09 amwaterhouseSet the start res and start seq
2006-08-08 amwaterhouseApplet has hidden regions
2006-05-02 amwaterhouseRemove unnecessary panel, also nullFrame created only...
2006-05-01 amwaterhousejava 1.1 compatibility
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