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JAL-2909 Tidy up bam file cigar code
[jalview.git] / src / jalview / appletgui / AlignmentPanel.java
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop blob | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview blob | commitdiff | diff to current
2017-09-01 gmungocJAL-2488 remove finalize methods blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-07-31 kiramtJAL-2634 Make overview box full height when alignment... bug/JAL-2634 blob | commitdiff | diff to current
2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView blob | commitdiff | diff to current
2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll positi... blob | commitdiff | diff to current
2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scrol... blob | commitdiff | diff to current
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview... blob | commitdiff | diff to current
2017-05-26 kiramtJAL-2491 Missed port to applet from JAL-1691 bug/JAL-2491 blob | commitdiff | diff to current
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... blob | commitdiff | diff to current
2017-05-15 kiramtJAL-2491 Tidies blob | commitdiff | diff to current
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of... blob | commitdiff | diff to current
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... blob | commitdiff | diff to current
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency... blob | commitdiff | diff to current
2017-05-12 kiramtJAL-2491 Added adjustment methods to be called directly blob | commitdiff | diff to current
2017-05-12 kiramtJAL-2491 Tweaks for applet blob | commitdiff | diff to current
2017-05-11 kiramtJAL-2491 First port to applet blob | commitdiff | diff to current
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... blob | commitdiff | diff to current
2017-04-03 gmungocJAL-2435 further adjustments to behaviour in split... blob | commitdiff | diff to current
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code blob | commitdiff | diff to current
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... blob | commitdiff | diff to current
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui... blob | commitdiff | diff to current
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... blob | commitdiff | diff to current
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers... blob | commitdiff | diff to current
2016-11-02 Jim ProcterJAL-966 JAL-345 JAL-1738 quick rewrite of scrollToPosit... blob | commitdiff | diff to current
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults... blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-09-22 gmungocJAL-2216 finalize call super.finalize() blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates... blob | commitdiff | diff to current
2015-07-08 gmungocJAL-1759 merge from develop blob | commitdiff | diff to current
2015-07-06 gmungocJAL-1799 tweaked calculation for applet, now showing... blob | commitdiff | diff to current
2015-07-06 gmungocJAL-1799 equivalent logic in applet blob | commitdiff | diff to current
2015-05-01 gmungocJAL-1690 refining 'copy format from' as applied to... blob | commitdiff | diff to current
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5... blob | commitdiff | diff to current
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... blob | commitdiff | diff to current
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-11-27 Jim Procterorganise imports blob | commitdiff | diff to current
2014-11-27 Jim ProcterJAL-966 promote getName to an api method blob | commitdiff | diff to current
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc blob | commitdiff | diff to current
2014-07-02 Jim Procterrevalidate appears to have gone away ?? (java 1.7 upgra... blob | commitdiff | diff to current
2014-06-13 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-1483_featu... blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-05-27 Jim ProcterJAL-1402 conditional logic to ensure annotation & label... blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-04-21 Jim ProcterJAL-967 JAL-1482 new feature renderer api - needs more... blob | commitdiff | diff to current
2014-04-04 Jim ProcterJAL-1211 - set annotation panel height according to... blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2012-11-08 jproctertidy imports blob | commitdiff | diff to current
2012-10-22 jprocterJalview 2.8 Source Header blob | commitdiff | diff to current
2012-10-03 jprocterformatting blob | commitdiff | diff to current
2012-09-24 jprocterJAL-958 JAL-966 refactor group/alignment associated... blob | commitdiff | diff to current
2012-08-29 jprocterJAL-1155 fix panel length calculation for grouped graph... blob | commitdiff | diff to current
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... blob | commitdiff | diff to current
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to... blob | commitdiff | diff to current
2011-10-21 jprocterextend alignPanel api with OOMHandler call to raise... blob | commitdiff | diff to current
2011-10-10 jprocterupdate author list in license for (JAL-826) blob | commitdiff | diff to current
2011-09-27 jprocterapply version 2.7 copyright blob | commitdiff | diff to current
2011-07-22 jprocterensure propagation of colour change on annotation updat... blob | commitdiff | diff to current
2011-07-18 jprocterfixed mouseover problem - still need to deal with flick... blob | commitdiff | diff to current
2011-06-30 jprocterset initial annotation panel height appropriately ... blob | commitdiff | diff to current
2011-06-29 jprocterensure annotation height adjuster doesn't disappear... blob | commitdiff | diff to current
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager... blob | commitdiff | diff to current
2011-04-21 jproctermoved to same place as in jalview.gui blob | commitdiff | diff to current
2011-02-18 jprocterfix scrolltoposition behaviour and new alignmentPanel api blob | commitdiff | diff to current
2011-02-14 jprocterJAL-621 (mouseover debugging) and JAL-564 (annotation... blob | commitdiff | diff to current
2011-02-04 jprocter1.2ish awt methods blob | commitdiff | diff to current
2011-02-04 jprocter1.2ish awt methods and excluding unused code blob | commitdiff | diff to current
2011-02-04 jprocteradjustable annotation panel height and vertical scrollb... blob | commitdiff | diff to current
2011-01-21 jproctersearch result highlighting and scrolling and some patch... blob | commitdiff | diff to current
2011-01-18 jprocterpatch for JAL-695 - need to test if this is observed... blob | commitdiff | diff to current
2010-09-23 jprocterapply jalview code style blob | commitdiff | diff to current
2010-09-23 jprocterJalview 2.6 source licence blob | commitdiff | diff to current
2010-04-30 jprocterjalview 2.5 release banner blob | commitdiff | diff to current
2009-06-08 jprocterapply gpl development license blob | commitdiff | diff to current
2008-11-12 jprocterautomatic scrolling option added to view blob | commitdiff | diff to current
2008-09-04 jproctermerge from 2_4_Release branch blob | commitdiff | diff to current
2008-07-18 jprocterSequence label colour stored for each sequence group blob | commitdiff | diff to current
2007-02-27 amwaterhouseUse paintAlignment blob | commitdiff | diff to current
2007-02-07 amwaterhouseFormatting blob | commitdiff | diff to current
2006-12-05 amwaterhouseSet startRes 0 for switch to wrap view blob | commitdiff | diff to current
2006-11-21 amwaterhouseSet start seq and end seq correctly blob | commitdiff | diff to current
2006-11-14 amwaterhouseCommands, history, consensus, refresh updated blob | commitdiff | diff to current
2006-10-03 amwaterhouseCheck on vscrollMax values blob | commitdiff | diff to current
2006-09-01 amwaterhouseMAC moved to viewport blob | commitdiff | diff to current
2006-08-21 amwaterhouseheader updated blob | commitdiff | diff to current
2006-08-09 amwaterhouseSet the start res and start seq blob | commitdiff | diff to current
2006-08-08 amwaterhouseApplet has hidden regions blob | commitdiff | diff to current
2006-05-02 amwaterhouseRemove unnecessary panel, also nullFrame created only... blob | commitdiff | diff to current
2006-05-01 amwaterhousejava 1.1 compatibility blob | commitdiff | diff to current
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