merge
[jalview.git] / src / jalview / appletgui /
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev
2015-01-07 Jim ProcterJAL-1483 source formatting
2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfig...
2015-01-07 Jim ProcterJAL-1483 organise imports
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project'
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-05 gmungocJAL-1609 refactored colour by sequence command, now...
2014-11-27 Jim Procterorganise imports
2014-11-27 Jim ProcterJAL-966 promote getName to an api method
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-207_pairwise-alignment-context...
2014-11-26 Charles OfoegbuMerge branch 'bug/JAL-207_pairwise-alignment-context...
2014-11-26 Charles OfoegbuJAL-207 pairwise alignment sequence contexts propergati...
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
2014-11-23 Jim ProcterJAL-1569 interactive editing of secondary structure...
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-11-03 Jim ProcterMerge branch 'bug/JAL-1250_redundance-removal' into...
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-10-28 Charles OfoegbuJAL-1250 Redundancy removal bug fix for Applet version
2014-10-10 darolmarJAL-1355
2014-10-07 Jim ProcterJAL-1557 partial implementation - need to think about...
2014-10-07 Jim Procterpatch for JAL-1151 - select whole sequence when double...
2014-10-07 Jim ProcterJAL-1421 remove Vector and pass a list
2014-10-07 Jim ProcterJAL-1151 source tidy
2014-09-26 darolmarJAL-1355
2014-09-23 darolmarJAL-1355
2014-09-19 darolmarJAL-1355
2014-09-12 j.procter@dundee... JAL-1486 JAL-1543 pushed alignment viewport->view-...
2014-08-08 j.procter@dundee... JAL-1482 feature renderer and manipulation code refacto...
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-08-08 j.procter@dundee... JAL-1483 model and api for feature display list on...
2014-07-02 Jim Procterrevalidate appears to have gone away ?? (java 1.7 upgra...
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure...
2014-06-13 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-1483_featu...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-06-04 Jim ProcterJAL-1355 key typo
2014-05-27 Jim ProcterJAL-1402 conditional logic to ensure annotation & label...
2014-05-27 Jim ProcterJAL-1508 make default font size 11pt for embedded menus...
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-02 Jim ProcterMerge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
2014-05-02 Jim ProcterMerge branch 'JAL-1397' into develop
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
2014-05-01 Jim Procterfix for JAL-1495 - initialise menu entry from current...
2014-05-01 Jim Procterfix for JAL-1494 tweaked logic to fix NPEs and modify...
2014-05-01 Jim ProcterJAL-969 remove unnecessary overrides
2014-04-29 Jim ProcterMerge branch 'JAL-1340_redundancy' into develop
2014-04-28 Jim ProcterJAL-1340 mark redundant sequences as soon as redundancy...
2014-04-28 Jim ProcterJAL-1340 simpler and more efficient interactive highlig...
2014-04-28 Jim ProcterJAL-1340 ensure slider value wide enough to see three...
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into develop
2014-04-24 Jim ProcterJAL-1232 fix - ensure display all columns flag is set...
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop
2014-04-21 Jim ProcterJAL-967 JAL-1482 new feature renderer api - needs more...
2014-04-05 Jim ProcterMerge branch 'r281_JAL-1211' into develop
2014-04-05 Jim ProcterMerge branch 'r281_JAL-1211' into Release_2_8_1_Branch
2014-04-04 Jim ProcterJAL-1211 - set annotation panel height according to...
2014-04-04 Jim ProcterJAL-1211 - pick up site-defined defined window geometry...
2014-04-04 Jim ProcterJAL-1335 typo and 'edit' action
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-02-17 Jim ProcterJAL-535 interface for GUI state update methods that...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 natasha's name on applet author list
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs_r281' into develop
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into JAL-1422_srs_r281
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into Release_2_8_Branch
2014-01-13 Jim ProcterJAL-1422 update any existing configuration to replace...
2014-01-13 Jim ProcterJAL-1422 change default link to EMBL-EBI Search
2013-12-25 darolmarJAL-1355 (basic i18n support)
2013-10-17 Jim ProcterMerge branch 'JAL-1397' into develop
2013-10-17 Jim Procterfix for JAL-1398 - original colourscheme is enabled...
2013-10-17 Jim ProcterJAL-1233 TODO concerning the way we propagate annotatio...
2013-10-17 Jim ProcterJAL-1397 getters for originalColours flag
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work...
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1
2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
2013-10-08 Jim ProcterJAL-1384 Create Group in selection popup menu
2013-10-08 Jim Procterfix for JAL-1387
2013-10-08 Jim ProcterJAL-1384 documentation and consistent ordering for...
2013-10-08 Jim ProcterJAL-1384 group/ungroup sequences with command/ctrl...
2013-10-07 Jim ProcterJAL-1385 refactor logic to AlignmentViewController
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
2013-08-30 Jim ProcterJAL-1367 entry in sequence ID popup menu to set/unset...
2013-08-30 Jim ProcterJAL-1370 allow show unconserved to reflect differences...
2013-08-30 Jim ProcterJAL-1370 allow show unconserved to reflect differences...
2013-08-30 Jim ProcterJAL-1367 allow reference sequence to be shown in bold...
2013-08-29 darolmari18n
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs...
2013-07-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-23 Jim ProcterMerge branch 'bug/JAL-1230' into develop
2013-06-23 Jim ProcterJAL-1230 update alignment state for annotation edits...
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-07 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop
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