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Merge branch 'features/JAL-653_gffalignments' into features/JAL-653_JAL-1766_htslib_r...
[jalview.git]
/
src
/
jalview
/
appletgui
/
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
tree
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commitdiff
2015-06-12
tcofoegbu
JAL-1641 refactor
tree
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commitdiff
2015-06-10
tcofoegbu
JAL-1641 updated applet version
tree
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commitdiff
2015-06-05
tcofoegbu
Merge branch 'bug/JAL-1760_restore-hidden-seqs' into...
tree
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commitdiff
2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1482 JAL-653 refactor feature file import code...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1482 refactor setTableData to more sensible name...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-06-04
gmungoc
JAL-1750 View Mapping scoped to that viewer's mappings...
tree
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commitdiff
2015-06-01
tcofoegbu
JAL-1641 remove all refs/imports from gui package
tree
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commitdiff
2015-05-19
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
tree
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commitdiff
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
tree
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commitdiff
2015-05-18
gmungoc
JAL-1663 detect tab out of RGB value; correct field...
tree
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commitdiff
2015-05-18
gmungoc
JAL-1663 apply new colour correctly; source formatting
tree
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commitdiff
2015-05-01
gmungoc
JAL-1690 refining 'copy format from' as applied to...
tree
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commitdiff
2015-05-01
gmungoc
JAL-1690 unused fields removed
tree
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commitdiff
2015-04-28
gmungoc
JAL-1684 removed reflection from ViewStyle (to Junit...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1690 show 'scale protein' in protein _and_ dna...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1695 parameter controls whether SplitFrame is enabled
tree
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commitdiff
2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
tree
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commitdiff
2015-04-02
gmungoc
JAL-1690 'scale protein as cDNA' options in Preferences...
tree
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commitdiff
2015-04-01
gmungoc
JAL-1264 reinstate Show annotations menu item
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-02-27
Jim Procter
JAL-1678 - patch to make sure we only compare positions...
tree
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commitdiff
2015-02-27
Jim Procter
fix for JAL-1678
tree
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commitdiff
2015-02-02
Charles Ofoegbu
Merge commit
tree
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 revised Finder's implementation to use a flag...
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-23
Charles Ofoegbu
Merge branch 'features/JAL-1553_improvement-select...
tree
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commitdiff
2015-01-23
Charles Ofoegbu
JAL-1553 added help documentation and updated Annotatio...
features/JAL-1553_improvement-select-column-by-annotation-row-query-interface
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 crlf changes
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 hasHiddenRows is now an interface method
tree
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commitdiff
2015-01-23
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 formatting/imports
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 JAL-962 formatting and code change ripples...
tree
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commitdiff
2015-01-23
Charles Ofoegbu
JAL-1553 fixed null pointer exception thrown in SeqCanv...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 source code formatting
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
tree
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commitdiff
2015-01-22
Charles Ofoegbu
JAL-1553 added applet support for the select-column...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 formatting
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 employ new AnnotationFile reader method to...
tree
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commitdiff
2015-01-09
Jim Procter
Merge branch 'JAL-1372_referenceseq' into feature_29...
tree
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commitdiff
2015-01-07
Jim Procter
Merge branch 'develop' into JAL-1483_29dev
tree
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commitdiff
2015-01-07
Jim Procter
JAL-1483 source formatting
tree
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commitdiff
2015-01-07
Jim Procter
JAL-1483 refactor NJTree constructor to allow preconfig...
tree
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commitdiff
2015-01-07
Jim Procter
JAL-1483 organise imports
tree
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commitdiff
2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-12-05
gmungoc
JAL-1609 refactored colour by sequence command, now...
tree
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commitdiff
2014-11-27
Jim Procter
organise imports
tree
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commitdiff
2014-11-27
Jim Procter
JAL-966 promote getName to an api method
tree
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commitdiff
2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-207_pairwise-alignment-context...
tree
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commitdiff
2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-207_pairwise-alignment-context...
tree
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commitdiff
2014-11-26
Charles Ofoegbu
JAL-207 pairwise alignment sequence contexts propergati...
tree
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commitdiff
2014-11-25
gmungoc
JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 interactive editing of secondary structure...
tree
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commitdiff
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
tree
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commitdiff
2014-11-03
Jim Procter
Merge branch 'bug/JAL-1250_redundance-removal' into...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
tree
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commitdiff
2014-10-28
Charles Ofoegbu
JAL-1250 Redundancy removal bug fix for Applet version
tree
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commitdiff
2014-10-10
darolmar
JAL-1355
tree
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commitdiff
2014-10-07
Jim Procter
JAL-1557 partial implementation - need to think about...
tree
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commitdiff
2014-10-07
Jim Procter
patch for JAL-1151 - select whole sequence when double...
tree
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commitdiff
2014-10-07
Jim Procter
JAL-1421 remove Vector and pass a list
tree
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commitdiff
2014-10-07
Jim Procter
JAL-1151 source tidy
tree
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commitdiff
2014-09-26
darolmar
JAL-1355
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-09-19
darolmar
JAL-1355
tree
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1486 JAL-1543 pushed alignment viewport->view-...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1482 feature renderer and manipulation code refacto...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 move show sequence feature and sequence featur...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 model and api for feature display list on...
tree
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commitdiff
2014-07-02
Jim Procter
revalidate appears to have gone away ?? (java 1.7 upgra...
tree
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commitdiff
2014-07-02
Jim Procter
JAL-1333 JAL-1527 refactors to create core structure...
tree
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commitdiff
2014-06-13
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-1483_featu...
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-06-04
Jim Procter
JAL-1355 key typo
tree
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commitdiff
2014-05-27
Jim Procter
JAL-1402 conditional logic to ensure annotation & label...
tree
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commitdiff
2014-05-27
Jim Procter
JAL-1508 make default font size 11pt for embedded menus...
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-05-02
Jim Procter
Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
tree
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commitdiff
2014-05-02
Jim Procter
Merge branch 'JAL-1397' into develop
tree
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commitdiff
2014-05-01
Jim Procter
JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
tree
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commitdiff
2014-05-01
Jim Procter
fix for JAL-1495 - initialise menu entry from current...
tree
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commitdiff
2014-05-01
Jim Procter
fix for JAL-1494 tweaked logic to fix NPEs and modify...
tree
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commitdiff
2014-05-01
Jim Procter
JAL-969 remove unnecessary overrides
tree
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commitdiff
2014-04-29
Jim Procter
Merge branch 'JAL-1340_redundancy' into develop
tree
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commitdiff
2014-04-28
Jim Procter
JAL-1340 mark redundant sequences as soon as redundancy...
tree
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commitdiff
2014-04-28
Jim Procter
JAL-1340 simpler and more efficient interactive highlig...
tree
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commitdiff
2014-04-28
Jim Procter
JAL-1340 ensure slider value wide enough to see three...
tree
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commitdiff
2014-04-25
Jim Procter
Merge branch 'JAL-1177_prop_rnasecstr' into develop
tree
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commitdiff
2014-04-24
Jim Procter
JAL-1232 fix - ensure display all columns flag is set...
tree
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commitdiff
2014-04-21
Jim Procter
Merge branch 'jims_marckhacks' into develop
tree
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commitdiff
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